Experiment set7IT044 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x

200 most important genes:

  gene name fitness t score description  
PS417_24745 -4.6 -7.3 gamma-glutamyl phosphate reductase compare
PS417_24155 -4.1 -4.4 ATP-binding protein compare
PS417_27435 -4.1 -10.4 polyphosphate kinase compare
PS417_01605 -4.1 -3.3 phosphoglycerate mutase compare
PS417_20160 -4.1 -5.5 cysteine synthase compare
PS417_20985 -3.9 -4.9 porin compare
PS417_02510 -3.4 -6.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_27040 -3.4 -4.7 3-phosphoglycerate dehydrogenase compare
PS417_04415 -3.3 -9.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_05595 -3.2 -9.4 ornithine carbamoyltransferase compare
PS417_08125 -3.1 -2.2 prephenate dehydratase compare
PS417_01565 -3.1 -7.2 imidazole glycerol phosphate synthase compare
PS417_28220 -3.1 -3.6 LysR family transcriptional regulator compare
PS417_02415 -2.9 -5.7 phosphoserine phosphatase compare
PS417_23545 -2.9 -3.3 gamma-glutamyl kinase compare
PS417_01855 -2.8 -3.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_01850 -2.8 -8.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_00180 -2.8 -4.6 tryptophan synthase subunit alpha compare
PS417_01580 -2.7 -2.0 imidazole glycerol phosphate synthase compare
PS417_06375 -2.6 -1.3 deoxycytidine triphosphate deaminase compare
PS417_20125 -2.6 -5.8 phosphoribosylglycinamide formyltransferase compare
PS417_22690 -2.6 -6.4 phosphogluconate dehydratase compare
PS417_23995 -2.6 -1.6 preprotein translocase subunit SecG compare
PS417_27195 -2.5 -2.3 N-acetylglutamate synthase compare
PS417_00185 -2.5 -4.9 tryptophan synthase subunit beta compare
PS417_04420 -2.4 -10.8 histidinol dehydrogenase compare
PS417_23770 -2.4 -3.0 exodeoxyribonuclease V subunit alpha compare
PS417_23950 -2.4 -2.8 polynucleotide phosphorylase/polyadenylase compare
PS417_08245 -2.3 -2.3 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_18560 -2.3 -8.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_27795 -2.3 -1.4 orotate phosphoribosyltransferase compare
PS417_01575 -2.2 -7.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01560 -2.1 -3.6 imidazoleglycerol-phosphate dehydratase compare
PS417_07170 -2.1 -4.0 hypothetical protein compare
PS417_23800 -2.1 -10.1 ketol-acid reductoisomerase compare
PS417_07165 -2.0 -5.6 dihydrodipicolinate synthase compare
PS417_25715 -1.9 -5.5 anthranilate phosphoribosyltransferase compare
PS417_12855 -1.9 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18600 -1.9 -4.5 isopropylmalate isomerase compare
PS417_02005 -1.8 -11.7 glutamate synthase compare
PS417_04380 -1.7 -2.9 ABC transporter permease compare
PS417_26695 -1.7 -1.6 uracil phosphoribosyltransferase compare
PS417_23810 -1.7 -11.1 acetolactate synthase 3 catalytic subunit compare
PS417_25710 -1.7 -1.7 indole-3-glycerol-phosphate synthase compare
PS417_27835 -1.7 -6.6 endoribonuclease compare
PS417_26995 -1.6 -7.0 phosphoserine phosphatase compare
PS417_26890 -1.6 -5.9 dihydroxy-acid dehydratase compare
PS417_02000 -1.6 -10.7 glutamate synthase compare
PS417_26730 -1.6 -1.3 pyrroline-5-carboxylate reductase compare
PS417_01570 -1.6 -1.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_23805 -1.5 -5.6 acetolactate synthase 3 regulatory subunit compare
PS417_18585 -1.5 -6.1 3-isopropylmalate dehydrogenase compare
PS417_22450 -1.5 -2.0 ATP-dependent DNA helicase RuvA compare
PS417_02555 -1.5 -10.7 exoribonuclease R compare
PS417_06680 -1.4 -8.1 nuclease PIN compare
PS417_08130 -1.4 -1.8 aspartate aminotransferase compare
PS417_27870 -1.4 -3.4 ATP-dependent DNA helicase RecG compare
PS417_08185 -1.4 -4.6 glycosyl transferase compare
PS417_22620 -1.3 -4.5 pyruvate kinase compare
PS417_04585 -1.3 -2.1 hypothetical protein compare
PS417_08220 -1.3 -1.4 epimerase compare
PS417_10245 -1.3 -2.3 hypothetical protein compare
PS417_22520 -1.3 -2.9 histidine kinase compare
PS417_18690 -1.3 -3.8 aromatic amino acid aminotransferase compare
PS417_11175 -1.3 -2.0 AraC family transcriptional regulator compare
PS417_08155 -1.3 -2.6 integration host factor subunit beta compare
PS417_10015 -1.2 -1.5 hypothetical protein compare
PS417_12290 -1.2 -6.5 sulfite reductase compare
PS417_14980 -1.2 -1.2 universal stress protein UspA compare
PS417_26745 -1.2 -4.3 methionine biosynthesis protein MetW compare
PS417_22990 -1.2 -1.3 iron dicitrate transport regulator FecR compare
PS417_04385 -1.2 -5.2 organic solvent ABC transporter substrate-binding protein compare
PS417_08190 -1.2 -8.8 membrane protein compare
PS417_13305 -1.2 -1.1 hypothetical protein compare
PS417_23110 -1.2 -5.4 2-isopropylmalate synthase compare
PS417_06645 -1.2 -5.8 RNA polymerase-associated protein RapA compare
PS417_08135 -1.2 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08205 -1.2 -3.4 acetyltransferase compare
PS417_21125 -1.2 -5.2 phosphoadenosine phosphosulfate reductase compare
PS417_09300 -1.1 -2.7 peptidylprolyl isomerase compare
PS417_18530 -1.1 -4.4 O-succinylhomoserine sulfhydrylase compare
PS417_03560 -1.1 -2.1 GTP-binding protein compare
PS417_08200 -1.1 -3.8 hypothetical protein compare
PS417_02950 -1.1 -2.1 tRNA-dihydrouridine synthase B compare
PS417_16490 -1.1 -1.5 cell division protein FtsK compare
PS417_20880 -1.1 -2.2 GntR family transcriptional regulator compare
PS417_27585 -1.1 -1.9 diaminopimelate epimerase compare
PS417_18595 -1.1 -2.8 3-isopropylmalate dehydratase compare
PS417_16715 -1.1 -1.2 DoxX family protein compare
PS417_20705 -1.0 -3.3 cbb3-type cytochrome c oxidase subunit II compare
PS417_05790 -1.0 -4.8 hypothetical protein compare
PS417_03815 -1.0 -3.6 DNA transporter compare
PS417_21000 -1.0 -2.5 CrfX protein compare
PS417_26740 -1.0 -5.1 homoserine acetyltransferase compare
PS417_03145 -1.0 -2.9 acetyl-CoA acetyltransferase compare
PS417_16465 -1.0 -5.4 sirohydrochlorin ferrochelatase compare
PS417_09010 -1.0 -1.6 phosphohistidine phosphatase compare
PS417_07615 -1.0 -3.8 TetR family transcriptional regulator compare
PS417_01620 -1.0 -3.0 preprotein translocase subunit SecB compare
PS417_08195 -1.0 -5.3 hypothetical protein compare
PS417_04390 -0.9 -4.2 toluene tolerance protein compare
PS417_05695 -0.9 -3.7 transcriptional regulator compare
PS417_22840 -0.9 -1.8 tRNA-Met compare
PS417_19605 -0.9 -1.6 hypothetical protein compare
PS417_21285 -0.9 -4.0 hypothetical protein compare
PS417_17240 -0.9 -3.6 trigger factor compare
PS417_18540 -0.9 -2.3 colicin V production CvpA compare
PS417_11585 -0.9 -1.9 LuxR family transcriptional regulator compare
PS417_07710 -0.9 -4.6 membrane protein compare
PS417_22175 -0.9 -1.8 amino acid transporter LysE compare
PS417_26390 -0.9 -1.7 acyltransferase compare
PS417_00195 -0.9 -1.5 hypothetical protein compare
PS417_08250 -0.9 -1.8 competence protein ComEA compare
PS417_27865 -0.9 -2.4 LysR family transcriptional regulator compare
PS417_04410 -0.8 -1.3 hypothetical protein compare
PS417_05815 -0.8 -3.2 recombinase RecA compare
PS417_20310 -0.8 -2.3 hypothetical protein compare
PS417_01435 -0.8 -1.2 hypothetical protein compare
PS417_11480 -0.8 -1.8 hypothetical protein compare
PS417_08540 -0.8 -2.4 RNA helicase compare
PS417_18590 -0.8 -3.2 SAM-dependent methyltransferase compare
PS417_04270 -0.8 -4.9 ribonuclease G compare
PS417_23775 -0.8 -1.2 exodeoxyribonuclease V subunit beta compare
PS417_03515 -0.8 -1.6 type III secretion protein compare
PS417_25725 -0.8 -4.1 anthranilate synthase component I compare
PS417_10040 -0.8 -0.8 MFS transporter compare
PS417_13855 -0.8 -1.1 acetyl-CoA acetyltransferase compare
PS417_23380 -0.8 -1.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_21140 -0.8 -2.9 LysR family transcriptional regulator compare
PS417_23360 -0.8 -0.9 hypothetical protein compare
PS417_06540 -0.8 -1.4 membrane protein compare
PS417_23900 -0.8 -4.3 poly(A) polymerase compare
PS417_17350 -0.8 -2.0 copper resistance protein CopD compare
PS417_19190 -0.8 -2.0 BolA family transcriptional regulator compare
PS417_16560 -0.7 -1.5 GNAT family acetyltransferase compare
PS417_19805 -0.7 -1.4 flagellar M-ring protein FliF compare
PS417_22700 -0.7 -1.8 RNA polymerase subunit sigma-24 compare
PS417_10220 -0.7 -2.6 hypothetical protein compare
PS417_22935 -0.7 -2.2 hypothetical protein compare
PS417_09695 -0.7 -1.2 hydrolase compare
PS417_22695 -0.7 -4.6 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_19645 -0.7 -2.2 chemotaxis protein compare
PS417_05785 -0.7 -2.7 tail protein compare
PS417_28325 -0.7 -1.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_01285 -0.7 -1.7 haloacid dehalogenase compare
PS417_19675 -0.7 -2.7 chemotaxis protein CheY compare
PS417_15425 -0.7 -2.4 acetyltransferase compare
PS417_23205 -0.7 -2.4 transcriptional regulator compare
PS417_09625 -0.7 -1.1 sugar ABC transporter substrate-binding protein compare
PS417_23910 -0.7 -3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_16400 -0.7 -1.3 NAD(P)H-quinone oxidoreductase compare
PS417_11810 -0.7 -1.4 oxidoreductase compare
PS417_26990 -0.7 -0.9 RNA pyrophosphohydrolase compare
PS417_12015 -0.7 -2.3 phosphoglycerate mutase compare
PS417_12840 -0.7 -1.9 TetR family transcriptional regulator compare
PS417_02270 -0.7 -2.8 carbamoyltransferase compare
PS417_12535 -0.7 -1.3 nitrilase compare
PS417_17215 -0.7 -2.3 peptidylprolyl isomerase compare
PS417_15790 -0.7 -2.3 hypothetical protein compare
PS417_19500 -0.7 -2.7 antibiotic synthesis protein MbtH compare
PS417_20875 -0.7 -2.8 chromosome segregation protein SMC compare
PS417_28050 -0.7 -2.1 hypothetical protein compare
PS417_05830 -0.7 -2.9 hypothetical protein compare
PS417_26335 -0.7 -1.6 BetI family transcriptional regulator compare
PS417_08230 -0.7 -1.7 lipopolysaccharide biosynthesis protein RfbH compare
PS417_08410 -0.7 -1.1 hypothetical protein compare
PS417_00385 -0.7 -0.9 Fur family transcriptional regulator compare
PS417_07620 -0.7 -1.4 beta-hexosaminidase compare
PS417_20235 -0.7 -2.7 hypothetical protein compare
PS417_03310 -0.7 -2.6 carbonate dehydratase compare
PS417_18860 -0.7 -2.3 transcriptional regulator compare
PS417_21625 -0.7 -0.9 DNA-binding protein compare
PS417_22575 -0.7 -3.4 exonuclease I compare
PS417_25720 -0.7 -1.5 anthranilate synthase component II compare
PS417_00925 -0.7 -1.5 hypothetical protein compare
PS417_08225 -0.7 -1.7 acetolactate synthase compare
PS417_00085 -0.6 -1.9 16S rRNA methyltransferase compare
PS417_02210 -0.6 -2.4 diguanylate cyclase compare
PS417_14605 -0.6 -2.1 adenylate kinase compare
PS417_02365 -0.6 -1.5 hypothetical protein compare
PS417_06345 -0.6 -2.0 pseudouridine synthase compare
PS417_02280 -0.6 -1.2 GlcNAc-PI de-N-acetylase compare
PS417_25765 -0.6 -1.4 transcriptional regulator compare
PS417_03935 -0.6 -2.2 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_25390 -0.6 -2.3 MFS transporter compare
PS417_18395 -0.6 -1.2 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_13850 -0.6 -1.5 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
PS417_22050 -0.6 -2.9 ribonuclease BN compare
PS417_20650 -0.6 -4.2 hypothetical protein compare
PS417_22260 -0.6 -1.7 segregation and condensation protein B compare
PS417_19505 -0.6 -1.2 2,4-diaminobutyrate 4-aminotransferase compare
PS417_11400 -0.6 -1.3 phosphoglycerate mutase compare
PS417_25825 -0.6 -1.9 sulfurtransferase compare
PS417_05160 -0.6 -0.8 DNA polymerase III subunit chi compare
PS417_28515 -0.6 -2.4 16S rRNA methyltransferase compare
PS417_15100 -0.6 -1.9 BatB protein compare
PS417_14235 -0.6 -2.0 hypothetical protein compare
PS417_10665 -0.6 -1.0 hypothetical protein compare
PS417_06530 -0.6 -1.8 membrane protein compare
PS417_10005 -0.6 -2.1 Pyocin large subunit-like protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in exudates experiments

For exudates Brachypodium distachyon 27-day exudates across organisms