Experiment set7IT044 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x

200 most detrimental genes:

  gene name fitness t score description  
PS417_09575 +1.4 4.5 glutathione S-transferase compare
PS417_24370 +1.3 1.5 (2Fe-2S)-binding protein compare
PS417_26120 +1.2 2.1 hypothetical protein compare
PS417_24895 +1.2 1.8 hypothetical protein compare
PS417_19825 +1.1 7.1 ATPase AAA compare
PS417_16815 +1.1 1.7 acyl-CoA dehydrogenase compare
PS417_10910 +1.0 3.3 FAD-dependent oxidoreductase compare
PS417_02160 +1.0 1.4 hypothetical protein compare
PS417_19885 +1.0 3.1 flagellar basal body rod protein FlgG compare
PS417_07455 +1.0 2.4 glutamine amidotransferase compare
PS417_26805 +1.0 1.0 cell division protein FtsE compare
PS417_19730 +1.0 2.6 flagellar biosynthesis protein FliR compare
PS417_17305 +0.9 1.6 hypothetical protein compare
PS417_02370 +0.9 1.7 ADP-ribose pyrophosphatase compare
PS417_01375 +0.9 2.4 hypothetical protein compare
PS417_18160 +0.9 2.8 YeeE/YedE compare
PS417_26850 +0.9 0.9 twin-arginine translocation pathway signal protein compare
PS417_04050 +0.9 1.5 peptide ABC transporter ATP-binding protein compare
PS417_02745 +0.9 1.3 FMN-dependent NADH-azoreductase compare
PS417_07820 +0.9 1.9 transposase compare
PS417_16255 +0.9 1.7 RNA polymerase sigma factor compare
PS417_21655 +0.9 1.1 aspartate kinase compare
PS417_19830 +0.8 3.2 flagellar assembly protein FliT compare
PS417_27815 +0.8 1.2 hypothetical protein compare
PS417_07560 +0.8 1.3 universal stress protein UspA compare
PS417_14325 +0.8 3.6 AraC family transcriptional regulator compare
PS417_11875 +0.8 3.1 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare
PS417_19425 +0.8 1.0 allantoicase compare
PS417_07700 +0.8 2.3 chromosome partitioning protein ParA compare
PS417_27215 +0.8 3.0 hypothetical protein compare
PS417_06025 +0.8 2.7 alpha/beta hydrolase compare
PS417_15935 +0.8 1.6 Rrf2 family transcriptional regulator compare
PS417_21480 +0.8 1.8 23S rRNA pseudouridylate synthase compare
PS417_19090 +0.8 2.9 hypothetical protein compare
PS417_21565 +0.8 2.6 flagellar basal body rod protein FlgC compare
PS417_26220 +0.8 2.8 Rieske (2Fe-2S) protein compare
PS417_18990 +0.8 2.1 membrane protein compare
PS417_22795 +0.8 1.1 exclusion suppressor FxsA compare
PS417_10095 +0.8 1.2 hypothetical protein compare
PS417_19725 +0.8 3.8 flagellar biosynthesis protein FlhB compare
PS417_02770 +0.8 1.9 membrane protein compare
PS417_07840 +0.8 2.3 hypothetical protein compare
PS417_17440 +0.8 1.8 beta-lactamase compare
PS417_16045 +0.8 1.7 acyl-CoA dehydrogenase compare
PS417_18360 +0.8 1.5 hypothetical protein compare
PS417_00995 +0.7 2.0 alpha/beta hydrolase compare
PS417_06945 +0.7 0.7 membrane protein compare
PS417_24030 +0.7 1.7 MFS transporter compare
PS417_16320 +0.7 2.3 protein tyrosine phosphatase compare
PS417_21780 +0.7 2.7 argininosuccinate lyase compare
PS417_13490 +0.7 1.0 hypothetical protein compare
PS417_17340 +0.7 2.1 GNAT family acetyltransferase compare
PS417_04960 +0.7 1.5 hypothetical protein compare
PS417_19880 +0.7 4.1 flagellar basal body L-ring protein compare
PS417_19745 +0.7 4.2 flagellar assembly protein FliO compare
PS417_28450 +0.7 2.6 XRE family transcriptional regulator compare
PS417_24225 +0.7 1.9 hypothetical protein compare
PS417_19735 +0.7 3.5 flagellar biosynthesis protein FliQ compare
PS417_19270 +0.7 1.5 hypothetical protein compare
PS417_13545 +0.7 2.5 arginine aminotransferase compare
PS417_10655 +0.7 2.4 LuxR family transcriptional regulator compare
PS417_23715 +0.7 2.7 cupin compare
PS417_11415 +0.7 1.6 hypothetical protein compare
PS417_01095 +0.7 1.6 amino acid ABC transporter ATP-binding protein compare
PS417_13620 +0.7 1.2 thermostable hemolysin compare
PS417_24840 +0.7 1.1 hypothetical protein compare
PS417_14200 +0.7 1.8 hypothetical protein compare
PS417_08685 +0.7 1.4 flagellar hook-length control protein FliK compare
PS417_09160 +0.7 2.2 GNAT family acetyltransferase compare
PS417_00650 +0.7 0.8 LysR family transcriptional regulator compare
PS417_13075 +0.6 0.9 hypothetical protein compare
PS417_14595 +0.6 1.8 pyrroline-5-carboxylate reductase compare
PS417_03920 +0.6 2.0 dephospho-CoA kinase compare
PS417_26305 +0.6 2.2 AraC family transcriptional regulator compare
PS417_10405 +0.6 0.8 filamentous hemagglutinin compare
PS417_15495 +0.6 2.7 FAD-dependent oxidoreductase compare
PS417_09605 +0.6 1.4 glycosyl transferase compare
PS417_15540 +0.6 0.9 NUDIX hydrolase compare
PS417_19720 +0.6 0.8 DNA-binding protein compare
PS417_02705 +0.6 1.0 urease accessory protein UreF compare
PS417_20845 +0.6 3.7 hypothetical protein compare
PS417_05100 +0.6 1.4 RNA polymerase sigma factor compare
PS417_25905 +0.6 1.8 AsnC family transcriptional regulator compare
PS417_06370 +0.6 1.4 cold-shock protein compare
PS417_16870 +0.6 2.0 short-chain dehydrogenase compare
PS417_18765 +0.6 2.2 hypothetical protein compare
PS417_17320 +0.6 1.8 phenylhydantoinase compare
PS417_21585 +0.6 4.4 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_23035 +0.6 2.1 D-trehalose PTS system, I, HPr, and IIA components (from data) compare
PS417_09880 +0.6 2.3 hypothetical protein compare
PS417_19795 +0.6 2.7 flagellar assembly protein FliH compare
PS417_26270 +0.6 1.5 AraC family transcriptional regulator compare
PS417_07255 +0.6 2.5 Deoxyribonolactonase (from data) compare
PS417_09580 +0.6 2.2 tyrosyl-trna synthetase compare
PS417_05235 +0.6 1.7 peptidase inhibitor I42 compare
PS417_18090 +0.6 2.7 iron ABC transporter compare
PS417_20825 +0.6 1.7 drug:proton antiporter compare
PS417_12755 +0.6 1.0 RND transporter compare
PS417_15030 +0.6 0.9 short-chain dehydrogenase compare
PS417_15035 +0.6 1.0 alkylhydroperoxidase compare
PS417_28070 +0.6 3.2 phosphate ABC transporter ATP-binding protein compare
PS417_19710 +0.6 3.7 flagellar biosynthesis protein FlhA compare
PS417_23855 +0.6 1.3 ABC transporter substrate-binding protein compare
PS417_15390 +0.6 2.0 hypothetical protein compare
PS417_21955 +0.6 2.3 dehydrogenase compare
PS417_24540 +0.6 2.7 endonuclease compare
PS417_12925 +0.6 2.9 serine dehydratase compare
PS417_26240 +0.6 0.9 N-methylproline demethylase compare
PS417_19765 +0.6 3.0 flagellar hook-length control protein compare
PS417_11945 +0.6 1.5 hypothetical protein compare
PS417_24885 +0.5 1.9 transcriptional regulator compare
PS417_13085 +0.5 1.5 FMN-dependent NADH-azoreductase compare
PS417_13445 +0.5 1.0 D-aminopeptidase compare
PS417_06420 +0.5 3.1 ATP-dependent DNA ligase compare
PS417_16885 +0.5 1.5 hypothetical protein compare
PS417_11280 +0.5 2.1 HxcX atypical pseudopilin compare
PS417_25280 +0.5 2.0 methyltransferase compare
PS417_28080 +0.5 4.6 phosphate ABC transporter permease compare
PS417_08940 +0.5 1.5 thioesterase compare
PS417_06575 +0.5 1.5 DoxX compare
PS417_21555 +0.5 2.8 flagellar hook protein FlgE compare
PS417_24615 +0.5 0.7 hypothetical protein compare
PS417_07195 +0.5 2.2 hypothetical protein compare
PS417_02925 +0.5 1.9 membrane protein compare
PS417_11600 +0.5 2.2 urea ABC transporter permease compare
PS417_13575 +0.5 1.2 succinylglutamate desuccinylase compare
PS417_05140 +0.5 1.2 dipicolinate synthase compare
PS417_18850 +0.5 1.2 hypothetical protein compare
PS417_10135 +0.5 1.9 phage tail protein compare
PS417_27910 +0.5 1.9 PppA compare
PS417_13460 +0.5 1.5 peptidase compare
PS417_01210 +0.5 3.3 hypothetical protein compare
PS417_24580 +0.5 2.3 pseudouridine synthase compare
PS417_05440 +0.5 2.5 chemotaxis protein CheY compare
PS417_05560 +0.5 1.4 ABC transporter compare
PS417_21570 +0.5 3.2 flagellar basal body rod protein FlgB compare
PS417_09470 +0.5 0.6 hypothetical protein compare
PS417_02880 +0.5 1.1 copper chaperone compare
PS417_05255 +0.5 1.8 hypothetical protein compare
PS417_09595 +0.5 2.3 membrane protein compare
PS417_04835 +0.5 1.2 hemolysin D compare
PS417_22215 +0.5 1.8 membrane protein compare
PS417_15875 +0.5 1.0 LuxR family transcriptional regulator compare
PS417_11230 +0.5 1.6 hydroxyacid dehydrogenase compare
PS417_23530 +0.5 1.9 1,2-oxophytodienoate reductase compare
PS417_08440 +0.5 2.4 hypothetical protein compare
PS417_06815 +0.5 3.3 beta-lactamase compare
PS417_18980 +0.5 0.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_14420 +0.5 2.1 acyl-CoA dehydrogenase compare
PS417_28270 +0.5 1.2 hypothetical protein compare
PS417_09800 +0.5 1.6 cytosine deaminase compare
PS417_28075 +0.5 2.9 phosphate ABC transporter permease compare
PS417_11935 +0.5 2.2 ABC transporter substrate-binding protein compare
PS417_22765 +0.5 1.9 InaA protein compare
PS417_19695 +0.5 1.9 flagellar biosynthesis sigma factor compare
PS417_02030 +0.5 1.5 3-oxoacyl-ACP synthase compare
PS417_03940 +0.5 1.4 membrane protein compare
PS417_10145 +0.5 1.3 hypothetical protein compare
PS417_19510 +0.5 2.1 N-acetylmuramoyl-L-alanine amidase compare
PS417_11100 +0.5 2.1 MocE compare
PS417_12125 +0.5 1.3 D-glucosaminate dehydratase (EC 4.3.1.9) (from data) compare
PS417_23050 +0.5 1.7 trehalose PTS system, EII-BC components TreB (from data) compare
PS417_06040 +0.5 1.0 hypothetical protein compare
PS417_14675 +0.5 2.0 aldehyde dehydrogenase compare
PS417_05325 +0.5 1.4 fimbrial protein compare
PS417_20040 +0.5 1.5 cobyric acid synthase compare
PS417_00065 +0.5 0.7 3-methyladenine DNA glycosylase compare
PS417_17675 +0.5 0.8 ABC transporter compare
PS417_19785 +0.5 1.9 flagellar biogenesis protein compare
PS417_09500 +0.5 2.0 glucose 1-dehydrogenase compare
PS417_10720 +0.5 1.5 chemotaxis protein CheY compare
PS417_25290 +0.5 1.5 hypothetical protein compare
PS417_14875 +0.5 1.1 polyisoprenoid-binding protein compare
PS417_15510 +0.4 0.5 hypothetical protein compare
PS417_16165 +0.4 2.0 ABC transporter substrate-binding protein compare
PS417_23405 +0.4 1.6 transcriptional regulator compare
PS417_11950 +0.4 0.8 hypothetical protein compare
PS417_21595 +0.4 1.6 flagellar biosynthesis protein FlgN compare
PS417_24455 +0.4 2.0 membrane protein compare
PS417_05065 +0.4 1.1 hypothetical protein compare
PS417_13640 +0.4 0.8 ribose ABC transporter permease compare
PS417_15455 +0.4 1.7 ABC transporter substrate-binding protein compare
PS417_18940 +0.4 1.3 LysR family transcriptional regulator compare
PS417_21430 +0.4 1.4 3-oxoacyl-ACP synthase compare
PS417_28205 +0.4 2.7 transporter compare
PS417_11720 +0.4 1.1 class V aminotransferase compare
PS417_26535 +0.4 2.0 cytochrome B561 compare
PS417_26750 +0.4 2.0 homoserine acetyltransferase compare
PS417_05310 +0.4 2.1 hypothetical protein compare
PS417_13165 +0.4 1.0 peroxidase compare
PS417_04760 +0.4 0.9 hypothetical protein compare
PS417_13465 +0.4 1.8 hemolysin D compare
PS417_26115 +0.4 1.5 glutamine ABC transporter ATP-binding protein compare
PS417_14210 +0.4 1.2 hypothetical protein compare
PS417_13925 +0.4 1.7 hypothetical protein compare
PS417_10105 +0.4 1.9 hypothetical protein compare
PS417_09930 +0.4 0.9 hypothetical protein compare
PS417_05055 +0.4 1.3 hypothetical protein compare
PS417_17185 +0.4 2.1 pyruvate dehydrogenase compare
PS417_01015 +0.4 1.9 polar amino acid ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in exudates experiments

For exudates Brachypodium distachyon 27-day exudates across organisms