Experiment set7IT044 for Pseudomonas syringae pv. syringae B728a ΔmexB

Compare to:

KB with Helenine 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_2980 -4.0 -4.7 UDP-glucose pyrophosphorylase compare
Psyr_1614 -3.6 -4.9 lipid A biosynthesis acyltransferase compare
Psyr_0034 -2.9 -7.2 tryptophan synthase, beta chain compare
Psyr_0575 -2.9 -5.9 protease FtsH subunit HflC compare
Psyr_1409 -2.5 -4.2 Holliday junction DNA helicase subunit RuvA compare
Psyr_0033 -2.4 -6.3 tryptophan synthase, alpha chain compare
Psyr_2590 -2.4 -4.2 Periplasmic binding protein compare
Psyr_4687 -2.4 -11.5 biotin synthase compare
Psyr_2592 -2.3 -4.0 transport system permease protein compare
Psyr_2594 -2.2 -3.6 unknown conserved protein in bacilli compare
Psyr_5135 -2.1 -1.8 Protein of unknown function DUF37 compare
Psyr_4519 -2.0 -6.2 General substrate transporter:Major facilitator superfamily compare
Psyr_5132 -2.0 -2.0 Glucose-inhibited division protein A subfamily compare
Psyr_4203 -2.0 -4.0 SsrA-binding protein compare
Psyr_4684 -1.9 -5.5 biotin synthesis protein BioC compare
Psyr_1544 -1.9 -2.4 SirA-like protein compare
Psyr_3179 -1.9 -3.8 DNA translocase FtsK compare
Psyr_1613 -1.9 -3.0 septum site-determining protein MinC compare
Psyr_4091 -1.8 -4.8 8-oxo-dGTPase compare
Psyr_1612 -1.7 -2.5 septum site-determining protein MinD compare
Psyr_5133 -1.7 -5.3 tRNA modification GTPase trmE compare
Psyr_1410 -1.7 -3.1 Holliday junction DNA helicase RuvB compare
Psyr_3883 -1.7 -2.7 dCTP deaminase compare
Psyr_4991 -1.6 -2.5 hypothetical protein compare
Psyr_3698 -1.6 -3.1 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_2591 -1.6 -6.1 transport system permease protein compare
Psyr_0187 -1.6 -3.6 conserved hypothetical protein compare
Psyr_1741 -1.6 -1.4 conserved hypothetical protein compare
Psyr_0849 -1.5 -6.9 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_0488 -1.5 -2.4 Response regulator receiver compare
Psyr_4089 -1.5 -3.0 PAS compare
Psyr_0529 -1.5 -4.4 Glycosyl transferase, group 1 compare
Psyr_0835 -1.5 -5.2 transcriptional regulator, TraR/DksA family compare
Psyr_1227 -1.5 -4.0 Queuosine biosynthesis protein compare
Psyr_1650 -1.5 -3.9 aminodeoxychorismate lyase apoprotein compare
Psyr_4830 -1.5 -1.6 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0475 -1.5 -3.3 Protein of unknown function YGGT compare
Psyr_4140 -1.5 -4.8 Protein of unknown function DUF140 compare
Psyr_4686 -1.4 -5.9 8-amino-7-oxononanoate synthase compare
Psyr_2285 -1.4 -1.3 Twin-arginine translocation pathway signal compare
Psyr_0454 -1.4 -5.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_RNA63 -1.4 -1.4 tRNA-Met compare
Psyr_4740 -1.4 -5.7 thiazole-phosphate synthase compare
Psyr_0214 -1.3 -2.8 conserved hypothetical protein compare
Psyr_3904 -1.3 -6.2 Major intrinsic protein compare
Psyr_0263 -1.3 -5.2 Two-component response regulator AlgB compare
Psyr_0574 -1.3 -4.2 protease FtsH subunit HflK compare
Psyr_0014 -1.3 -1.2 lipid A biosynthesis acyltransferase compare
Psyr_0917 -1.3 -7.7 ABC-2 compare
Psyr_4745 -1.3 -1.3 hypothetical protein compare
Psyr_1963 -1.3 -4.0 Cyclic peptide transporter compare
Psyr_2897 -1.3 -4.1 regulatory protein, LuxR:Response regulator receiver compare
Psyr_2593 -1.3 -3.5 ABC transporter compare
Psyr_5131 -1.2 -3.4 16S rRNA m(7)G-527 methyltransferase compare
Psyr_4158 -1.2 -6.6 conserved hypothetical protein compare
Psyr_3600 -1.2 -2.1 transcriptional regulator, LysR family compare
Psyr_3233 -1.2 -3.3 FMN reductase compare
Psyr_2719 -1.2 -2.2 transcriptional regulator, TetR family compare
Psyr_1786 -1.2 -2.1 membrane protein, putative compare
Psyr_4512 -1.2 -4.2 putative phage-related protein compare
Psyr_0918 -1.2 -7.4 ABC transporter compare
Psyr_3193 -1.2 -3.7 Transcription factor jumonji, jmjC compare
Psyr_4143 -1.2 -1.3 HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI compare
Psyr_2444 -1.2 -1.9 Response regulator receiver compare
Psyr_2045 -1.2 -2.1 transcriptional regulator, LuxR family compare
Psyr_3020 -1.1 -1.8 precorrin-4 C11-methyltransferase compare
Psyr_3282 -1.1 -4.1 transcriptional regulator, TetR family compare
Psyr_3644 -1.1 -2.6 prephenate dehydrogenase compare
Psyr_4754 -1.1 -2.2 16S rRNA m(2)G-966 methyltransferase compare
Psyr_4341 -1.1 -4.3 thiamine-phosphate diphosphorylase compare
Psyr_0487 -1.1 -1.2 glutathione synthase compare
Psyr_3701 -1.1 -3.2 thioredoxin, putative compare
Psyr_3419 -1.1 -3.0 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_4340 -1.1 -5.7 phosphomethylpyrimidine kinase, putative compare
Psyr_1372 -1.1 -2.1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_4141 -1.1 -4.4 ABC transporter compare
Psyr_3014 -1.1 -2.1 protoporphyrin IX magnesium-chelatase compare
Psyr_0184 -1.1 -2.1 Protein of unknown function DUF484 compare
Psyr_0826 -1.1 -6.2 glucose-6-phosphate isomerase compare
Psyr_4490 -1.1 -3.5 transcriptional regulator, DeoR family compare
Psyr_2582 -1.1 -5.9 TonB-dependent siderophore receptor compare
Psyr_1966 -1.1 -1.8 Peptidase M19, renal dipeptidase compare
Psyr_2069 -1.1 -2.5 conserved hypothetical protein compare
Psyr_1371 -1.0 -4.7 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_5067 -1.0 -3.2 conserved hypothetical protein compare
Psyr_3954 -1.0 -3.5 GTP-binding protein LepA compare
Psyr_0281 -1.0 -2.4 ABC transporter compare
Psyr_2580 -1.0 -1.9 Sigma-70 region 2 compare
Psyr_1489 -1.0 -1.9 hypothetical protein compare
Psyr_2854 -1.0 -5.0 conserved hypothetical protein compare
Psyr_1556 -1.0 -1.9 hypothetical protein compare
Psyr_4093 -1.0 -4.0 glutamate N-acetyltransferase compare
Psyr_3579 -1.0 -1.1 Class I peptide chain release factor compare
Psyr_2781 -1.0 -1.6 hypothetical protein compare
Psyr_1594 -1.0 -3.1 FKBP-type peptidyl-prolyl isomerase, N-terminal:Peptidylprolyl isomerase, FKBP-type compare
Psyr_0951 -1.0 -1.0 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_3651 -1.0 -1.1 2-phosphoglycolate phosphatase, prokaryotic:HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1 compare
Psyr_1816 -0.9 -3.5 transcriptional regulator, GntR family compare
Psyr_0653 -0.9 -1.4 transcriptional regulator, MerR family compare
Psyr_3374 -0.9 -1.7 Heavy metal response regulator compare
Psyr_3679 -0.9 -2.1 cob(II)yrinic acid a,c-diamide reductase compare
Psyr_3678 -0.9 -3.5 adenosylcobinamide-phosphate synthase compare
Psyr_3015 -0.9 -4.0 cobaltochelatase CobN subunit compare
Psyr_2811 -0.9 -1.7 hypothetical protein compare
Psyr_4842 -0.9 -5.5 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_2769 -0.9 -2.9 conserved hypothetical protein compare
Psyr_1419 -0.9 -1.3 preQ(0) biosynthesis protein QueC compare
Psyr_1910 -0.9 -3.6 VacJ-like lipoprotein compare
Psyr_0571 -0.9 -3.2 tRNA isopentenyltransferase compare
Psyr_1408 -0.9 -2.1 Holliday junction endonuclease RuvC compare
Psyr_3555 -0.9 -2.2 aspartate kinase compare
Psyr_4622 -0.9 -2.6 Nucleotidyl transferase compare
Psyr_0827 -0.9 -2.8 pantothenate synthetase compare
Psyr_0464 -0.9 -3.3 hypothetical protein compare
Psyr_3209 -0.9 -1.7 NADH dehydrogenase subunit N compare
Psyr_2984 -0.9 -2.3 conserved hypothetical protein compare
Psyr_2855 -0.9 -3.8 methionine synthase (B12-independent) compare
Psyr_2346 -0.9 -3.8 conserved hypothetical protein compare
Psyr_1954 -0.9 -1.9 conserved hypothetical protein compare
Psyr_1747 -0.9 -2.4 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_1447 -0.9 -1.7 conserved hypothetical protein compare
Psyr_4682 -0.9 -1.1 conserved hypothetical protein compare
Psyr_3598 -0.9 -2.8 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4057 -0.9 -2.4 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_2228 -0.8 -2.6 conserved hypothetical protein compare
Psyr_2403 -0.8 -2.5 Protein of unknown function DUF1330 compare
Psyr_3807 -0.8 -4.2 hypothetical protein compare
Psyr_4894 -0.8 -2.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_1755 -0.8 -3.8 ABC transporter compare
Psyr_1249 -0.8 -1.9 histidyl-tRNA synthetase compare
Psyr_4658 -0.8 -1.2 CDS compare
Psyr_4416 -0.8 -1.5 precorrin-8X methylmutase compare
Psyr_1350 -0.8 -3.2 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_0517 -0.8 -0.9 Dihydrolipoamide acetyltransferase compare
Psyr_0076 -0.8 -2.6 Xanthine phosphoribosyltransferase compare
Psyr_2833 -0.8 -1.1 CDS compare
Psyr_4305 -0.8 -1.3 conserved hypothetical protein compare
Psyr_3672 -0.8 -1.7 cobalamin-5'-phosphate synthase compare
Psyr_1270 -0.8 -0.8 conserved hypothetical protein compare
Psyr_2484 -0.8 -2.4 Acriflavin resistance protein compare
Psyr_2075 -0.8 -2.2 5-nucleotidase compare
Psyr_4797 -0.8 -1.2 Protein of unknown function DUF1090 compare
Psyr_1630 -0.8 -1.5 ABC transporter compare
Psyr_1668 -0.8 -1.7 amidophosphoribosyltransferase compare
Psyr_3369 -0.8 -2.0 Twin-arginine translocation pathway signal:Tat-translocated enzyme:Dyp-type peroxidase compare
Psyr_RNA11 -0.8 -0.8 tRNA-Lys compare
Psyr_5065 -0.8 -4.2 ATP-dependent DNA helicase UvrD compare
Psyr_1021 -0.8 -2.7 Short-chain dehydrogenase/reductase SDR compare
Psyr_3623 -0.8 -1.0 Protein of unknown function DUF1127 compare
Psyr_4408 -0.8 -3.9 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_0565 -0.8 -2.9 Protein of unknown function UPF0126 compare
Psyr_0909 -0.7 -1.9 transcriptional regulator, LysR family compare
Psyr_1378 -0.7 -1.7 RecA protein compare
Psyr_2791 -0.7 -3.3 hypothetical protein compare
Psyr_4683 -0.7 -2.6 dethiobiotin synthase compare
Psyr_0897 -0.7 -3.5 Protein of unknown function DUF6 compare
Psyr_0847 -0.7 -3.6 acetolactate synthase, small subunit compare
Psyr_4115 -0.7 -1.2 phosphoheptose isomerase compare
Psyr_4161 -0.7 -1.7 Rod shape-determining protein MreD compare
Psyr_0215 -0.7 -4.0 Exodeoxyribonuclease III xth compare
Psyr_0385 -0.7 -1.1 phosphoribosyl-ATP pyrophosphatase compare
Psyr_1864 -0.7 -2.6 spermidine synthase compare
Psyr_2779 -0.7 -2.0 Phage minor tail compare
Psyr_1268 -0.7 -2.2 extracellular solute-binding protein, family 3:SLT compare
Psyr_3177 -0.7 -3.1 Recombination protein MgsA compare
Psyr_1588 -0.7 -2.2 Putative exonuclease, RdgC compare
Psyr_0202 -0.7 -3.3 transcriptional regulator, LysR family compare
Psyr_1192 -0.7 -0.7 type III helper protein HrpA2 compare
Psyr_3596 -0.7 -1.5 Selenoprotein W-related protein compare
Psyr_3008 -0.7 -2.3 Undecaprenyl-diphosphatase compare
Psyr_1286 -0.7 -3.0 tyrosine recombinase XerD subunit compare
Psyr_3357 -0.7 -2.1 transcriptional regulator, LysR family compare
Psyr_2420 -0.7 -1.6 conserved hypothetical protein compare
Psyr_0916 -0.7 -4.8 GDP-mannose 4,6-dehydratase compare
Psyr_5072 -0.7 -1.3 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_2822 -0.7 -1.1 hypothetical protein compare
Psyr_1843 -0.7 -1.6 Protein of unknown function DUF1311 compare
Psyr_1616 -0.7 -1.1 Rieske [2Fe-2S] region compare
Psyr_3905 -0.7 -3.3 glycerol kinase compare
Psyr_4420 -0.7 -2.5 precorrin-6A reductase compare
Psyr_0532 -0.7 -2.7 conserved hypothetical protein compare
Psyr_4744 -0.7 -0.7 hypothetical protein compare
Psyr_3359 -0.7 -1.1 Phenazine biosynthesis PhzC/PhzF protein compare
Psyr_3013 -0.7 -2.0 magnesium chelatase subunit ChlD compare
Psyr_0920 -0.7 -5.5 Glycosyl transferase, group 1 compare
Psyr_0822 -0.7 -2.8 1-phosphofructokinase compare
Psyr_1022 -0.7 -2.0 conserved hypothetical protein compare
Psyr_4070 -0.7 -2.2 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_2464 -0.7 -3.4 methionine synthase (B12-dependent) compare
Psyr_2497 -0.7 -1.5 lipoprotein, putative compare
Psyr_2347 -0.6 -0.5 hypothetical protein compare
Psyr_0947 -0.6 -3.0 TPR repeat protein:TPR repeat protein compare
Psyr_1163 -0.6 -2.0 Isochorismatase hydrolase compare
Psyr_4637 -0.6 -1.8 acyl-phosphate glycerol-3-phosphate acyltransferase compare
Psyr_2824 -0.6 -2.1 conserved hypothetical protein compare
Psyr_1955 -0.6 -1.0 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_3835 -0.6 -1.5 hypothetical protein compare
Psyr_0919 -0.6 -4.5 Chromosome segregation ATPase-like protein compare
Psyr_0983 -0.6 -2.7 Protein of unknown function DUF159 compare
Psyr_4181 -0.6 -1.3 Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a ΔmexB in stress experiments

For stress Helenine across organisms