Experiment set7IT044 for Pseudomonas putida KT2440

Compare to:

5-Aminovaleric acid 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.5 -3.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1568 -4.8 -1.5 conserved protein of unknown function compare
PP_0082 -4.7 -6.4 tryptophan synthase alpha chain compare
PP_4678 -4.5 -13.7 Ketol-acid reductoisomerase compare
PP_2371 -4.5 -3.1 Sulphite reductase hemoprotein, beta subunit compare
PP_4696 -4.4 -3.1 Nitrogen regulation protein NR(I) compare
PP_4943 -4.4 -3.0 putative Glycosyl transferase compare
PP_4909 -4.3 -9.4 phosphoserine phosphatase compare
PP_1995 -4.3 -9.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5128 -4.3 -8.1 Dihydroxy-acid dehydratase compare
PP_0083 -4.1 -6.9 tryptophan synthase beta chain compare
PP_0289 -4.1 -8.8 Imidazoleglycerol-phosphate dehydratase compare
PP_0417 -4.1 -15.4 Anthranilate synthase component 1 compare
PP_1988 -4.1 -6.4 3-isopropylmalate dehydrogenase compare
PP_1986 -4.0 -4.4 3-isopropylmalate dehydratase small subunit compare
PP_1088 -3.9 -11.3 Argininosuccinate synthase compare
PP_4680 -3.9 -11.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3511 -3.9 -8.0 Branched-chain-amino-acid aminotransferase compare
PP_0965 -3.9 -8.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0422 -3.8 -5.1 Indole-3-glycerol phosphate synthase compare
PP_5289 -3.8 -4.3 Acetylglutamate kinase compare
PP_4874 -3.8 -2.3 50S ribosomal protein L9 compare
PP_2121 -3.7 -3.5 putative Lipoprotein compare
PP_4724 -3.7 -3.6 Carbamoyl-phosphate synthase small chain compare
PP_2001 -3.7 -7.1 O-succinylhomoserine sulfhydrylase compare
PP_5185 -3.7 -7.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0966 -3.6 -8.3 Histidinol dehydrogenase compare
PP_2910 -3.5 -8.8 L-2-hydroxyglutarate oxidase compare
PP_0421 -3.5 -6.6 Anthranilate phosphoribosyltransferase compare
PP_0292 -3.5 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5098 -3.4 -6.2 methionine biosynthesis protein MetW compare
PP_4828 -3.4 -1.5 Precorrin-8X methylmutase compare
PP_0967 -3.4 -6.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4679 -3.4 -5.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0184 -3.3 -6.9 Argininosuccinate lyase compare
PP_0787 -3.3 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0957 -3.3 -2.4 D-arabinose 5-phosphate isomerase compare
PP_1079 -3.3 -6.0 Ornithine carbamoyltransferase compare
PP_1985 -3.2 -4.5 3-isopropylmalate dehydratase large subunit compare
PP_1025 -3.2 -10.3 2-isopropylmalate synthase compare
PP_4890 -3.2 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_5097 -3.1 -10.8 homoserine O-acetyltransferase compare
PP_0290 -3.1 -5.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0213 -3.0 -5.0 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_4364 -3.0 -3.5 putative Anti-sigma F factor antagonist compare
PP_5015 -2.9 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3505 -2.8 -2.0 conserved protein of unknown function compare
PP_5508 -2.8 -1.5 conserved protein of unknown function compare
PP_5350 -2.7 -4.9 Transcriptional regulator, RpiR family compare
PP_0420 -2.7 -7.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5155 -2.7 -4.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0214 -2.6 -5.5 4-aminobutyrate aminotransferase compare
PP_5014 -2.5 -2.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_1231 -2.5 -3.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3999 -2.4 -5.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4723 -2.4 -7.5 Carbamoyl-phosphate synthase large chain compare
PP_4126 -2.4 -1.6 NADH-quinone oxidoreductase subunit I compare
PP_0691 -2.3 -3.4 Glutamate 5-kinase compare
PP_0164 -2.3 -5.7 conserved protein of unknown function compare
PP_4910 -2.2 -1.5 conserved protein of unknown function compare
PP_0345 -2.2 -3.4 putative Heptose kinase WapP compare
PP_2909 -2.2 -5.7 glutarate hydroxylase (from data) compare
PP_4999 -2.2 -1.4 dihydroorotase-like protein compare
PP_3821 -2.1 -6.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2402 -2.1 -2.3 putative Sensor histidine kinase compare
PP_0127 -2.1 -2.7 Thiol:disulfide interchange protein compare
PP_2370 -2.0 -2.7 conserved protein of unknown function compare
PP_3790 -2.0 -5.2 diaminopimelate epimerase compare
PP_3392 -2.0 -2.6 conserved protein of unknown function compare
PP_0291 -2.0 -1.9 conserved protein of unknown function compare
PP_3408 -1.9 -2.7 cobalt transporter subunit A compare
PP_0356 -1.9 -4.6 malate synthase G compare
PP_4561 -1.9 -1.1 stress response protein compare
PP_2302 -1.9 -5.5 DNA-binding, ATP-dependent protease compare
PP_3307 -1.9 -2.7 conserved protein of unknown function compare
PP_3748 -1.8 -4.5 conserved hypothetical protein compare
PP_3409 -1.8 -2.2 putative Cobalamin biosynthesis protein cobE compare
PP_2327 -1.8 -3.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4058 -1.7 -6.7 1,4-alpha-glucan branching enzyme compare
PP_5658 -1.7 -1.5 protein of unknown function compare
PP_0035 -1.6 -2.0 putative bactoprenol-linked glycose transferase compare
PP_3480 -1.6 -2.1 conserved protein of unknown function compare
PP_0150 -1.6 -1.5 conserved exported protein of unknown function compare
PP_1344 -1.6 -1.6 conserved protein of unknown function compare
PP_0001 -1.6 -1.3 probable chromosome-partitioning protein compare
PP_0653 -1.5 -1.4 conserved protein of unknown function compare
PP_3035 -1.5 -2.5 conserved protein of unknown function compare
PP_0158 -1.5 -6.0 glutaryl-CoA dehydrogenase conserved
PP_1664 -1.5 -2.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_0340 -1.5 -7.4 Glutamate-ammonia-ligase adenylyltransferase compare
PP_5094 -1.5 -4.1 putative enzyme with PLP binding domain compare
PP_1679 -1.5 -1.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0040 -1.5 -1.9 hypothetical protein compare
PP_4120 -1.4 -3.6 NADH-quinone oxidoreductase subunit B compare
PP_3378 -1.4 -1.4 putative 2-ketogluconokinase compare
PP_4940 -1.4 -4.3 Putative glycosyltransferase compare
PP_1734 -1.4 -2.7 Probable septum site-determining protein MinC compare
PP_5309 -1.4 -2.1 oxidative and nitrosative stress transcriptional dual regulator compare
PP_1972 -1.4 -4.6 aromatic-amino-acid aminotransferase compare
PP_3532 -1.4 -1.7 Transcriptional regulator, AsnC family compare
PP_1656 -1.4 -6.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_0261 -1.4 -3.3 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0512 -1.4 -1.9 hypothetical protein compare
PP_3829 -1.4 -3.4 Molybdenum transport system permease protein ModB compare
PP_0393 -1.4 -0.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0673 -1.3 -1.0 conserved protein of unknown function compare
PP_5227 -1.3 -4.4 diaminopimelate decarboxylase compare
PP_5639 -1.3 -5.2 conserved exported protein of unknown function compare
PP_4799 -1.3 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4964 -1.3 -2.7 D-erythrose 4-phosphate dehydrogenase compare
PP_2414 -1.3 -1.9 conserved exported protein of unknown function compare
PP_2903 -1.3 -2.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1111 -1.3 -4.3 putative Synthetase compare
PP_4131 -1.3 -4.2 NADH-quinone oxidoreductase subunit N compare
PP_5007 -1.3 -2.0 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5110 -1.3 -1.7 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_1493 -1.3 -2.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2999 -1.3 -1.3 Glyoxalase family protein compare
PP_1426 -1.3 -6.1 L-aspartate oxidase compare
PP_0846 -1.3 -1.3 DnaK-like molecular chaperone specific for IscU compare
PP_0516 -1.3 -2.1 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_5217 -1.3 -8.0 Polyphosphate kinase compare
PP_3808 -1.2 -1.6 Antibiotic synthesis protein MbtH compare
PP_5338 -1.2 -2.0 aspartate ammonia-lyase compare
PP_0809 -1.2 -5.2 disulfide bond formation protein B compare
PP_0855 -1.2 -2.5 conserved protein of unknown function compare
PP_2322 -1.2 -4.5 Major outer membrane lipoprotein compare
PP_3755 -1.2 -2.7 3-hydroxybutyryl-CoA dehydrogenase compare
PP_1410 -1.2 -1.2 conserved protein of unknown function compare
PP_0566 -1.1 -0.9 translation-related factor compare
PP_0157 -1.1 -4.6 transcriptional activator of gcdH, LysR family conserved
PP_0159 -1.1 -6.4 putative CoA-transferase family III conserved
PP_1366 -1.1 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_2793 -1.1 -1.4 Acyl-CoA dehydrogenase family protein compare
PP_3506 -1.1 -1.4 Magnesium chelatase, subunit ChII compare
PP_0666 -1.1 -2.6 conserved protein of unknown function compare
PP_5582 -1.1 -1.3 conserved protein of unknown function compare
PP_2442 -1.1 -1.4 conserved protein of unknown function, DUF480 family compare
PP_5000 -1.1 -1.4 peptidase component of the ATP-dependent HslVU protease compare
PP_1109 -1.1 -6.0 Transcriptional regulator, GntR family compare
PP_0735 -1.1 -1.1 molybdopterin-synthase adenylyltransferase compare
PP_3967 -1.1 -1.9 MutT/nudix family protein compare
PP_4977 -1.1 -4.5 5,10-methylenetetrahydrofolate reductase compare
PP_1912 -1.1 -3.1 Phosphate acyltransferase compare
PP_5621 -1.1 -1.2 protein of unknown function compare
PP_4116 -1.1 -4.5 isocitrate lyase compare
PP_2911 -1.1 -3.9 gamma-aminobutyrate permease compare
PP_4700 -1.1 -1.4 pantothenate synthetase compare
PP_2254 -1.1 -1.9 Transcriptional regulator, GntR family compare
PP_0367 -1.0 -3.0 conserved protein of unknown function compare
PP_4952 -1.0 -1.2 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1628 -1.0 -2.7 NMN amidohydrolase compare
PP_2898 -1.0 -1.8 conserved exported protein of unknown function compare
PP_4121 -1.0 -3.0 NADH-quinone oxidoreductase subunit C/D compare
PP_5218 -1.0 -3.7 DedA family protein compare
PP_4697 -1.0 -1.9 poly(A) polymerase compare
PP_0593 -1.0 -0.9 putative ribosome-binding factor compare
PP_4139 -1.0 -1.7 conserved protein of unknown function compare
PP_3509 -1.0 -2.1 Glyoxalase family protein compare
PP_5303 -1.0 -2.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5456 -1.0 -1.2 conserved protein of unknown function compare
PP_0368 -1.0 -5.2 putative Acyl-CoA dehydrogenase compare
PP_0398 -1.0 -2.6 Thiosulfate sulfurtransferase GlpE compare
PP_5659 -1.0 -1.9 protein of unknown function compare
PP_4406 -1.0 -1.8 conserved protein of unknown function compare
PP_1739 -1.0 -0.9 conserved membrane protein of unknown function compare
PP_4693 -0.9 -2.6 RNA polymerase-binding transcription factor DksA compare
PP_0280 -0.9 -2.9 Amino acid ABC transporter, permease protein compare
PP_0801 -0.9 -1.0 conserved exported protein of unknown function compare
PP_5352 -0.9 -4.6 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_1629 -0.9 -2.6 Protein RecA compare
PP_3730 -0.9 -1.9 Transcriptional regulatory protein AruR compare
PP_2031 -0.9 -0.9 conserved protein of unknown function compare
PP_3484 -0.9 -1.6 Response regulator receiver protein compare
PP_2136 -0.9 -2.1 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5381 -0.9 -1.5 hypothetical protein compare
PP_4356 -0.9 -2.0 Flagellar protein FliO compare
PP_4817 -0.9 -2.0 MaoC domain protein compare
PP_3065 -0.9 -2.8 Pyocin R2_PP, tail formation compare
PP_3519 -0.9 -0.7 putative Lipoprotein compare
PP_5337 -0.9 -2.0 LysR family transcriptional regulator compare
PP_1110 -0.9 -1.6 serine acetyltransferase compare
PP_2526 -0.9 -1.6 conserved membrane protein of unknown function compare
PP_1145 -0.9 -3.6 RNA polymerase-associated protein RapA compare
PP_2337 -0.9 -0.9 aconitate isomerase compare
PP_0094 -0.9 -2.7 5'-nucleotidase compare
PP_0758 -0.9 -1.8 conserved protein of unknown function compare
PP_0663 -0.9 -1.8 Transcriptional regulator, AsnC family compare
PP_2168 -0.8 -3.5 Transaldolase compare
PP_1764 -0.8 -2.9 Phosphoglycolate phosphatase 2 compare
PP_4130 -0.8 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4870 -0.8 -1.5 Azurin compare
PP_3339 -0.8 -2.7 conserved exported protein of unknown function compare
PP_2582 -0.8 -1.2 putative Heme oxygenase compare
PP_0240 -0.8 -1.6 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_5145 -0.8 -6.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2131 -0.8 -1.6 DNA-binding ATPase involved in replication compare
PP_4560 -0.8 -2.6 putative Ribonuclease BN compare
PP_5272 -0.8 -2.1 conserved protein of unknown function compare
PP_1147 -0.8 -1.9 conserved protein of unknown function compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source 5-Aminovaleric acid in Pseudomonas putida KT2440

For carbon source 5-Aminovaleric acid across organisms