Experiment set7IT043 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x

200 most important genes:

  gene name fitness t score description  
PS417_22690 -4.7 -4.0 phosphogluconate dehydratase compare
PS417_12855 -4.4 -7.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27795 -3.9 -1.4 orotate phosphoribosyltransferase compare
PS417_27040 -3.9 -3.1 3-phosphoglycerate dehydrogenase compare
PS417_01605 -3.8 -3.0 phosphoglycerate mutase compare
PS417_27195 -3.7 -1.8 N-acetylglutamate synthase compare
PS417_24745 -3.5 -5.4 gamma-glutamyl phosphate reductase compare
PS417_02005 -3.5 -13.9 glutamate synthase compare
PS417_05595 -3.4 -7.3 ornithine carbamoyltransferase compare
PS417_01575 -3.4 -6.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01850 -3.3 -9.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_20985 -3.3 -5.9 porin compare
PS417_24155 -3.3 -3.2 ATP-binding protein compare
PS417_02415 -3.2 -6.2 phosphoserine phosphatase compare
PS417_25710 -3.1 -1.5 indole-3-glycerol-phosphate synthase compare
PS417_26995 -3.1 -12.3 phosphoserine phosphatase compare
PS417_08125 -3.1 -2.1 prephenate dehydratase compare
PS417_27435 -2.9 -8.7 polyphosphate kinase compare
PS417_02000 -2.9 -14.4 glutamate synthase compare
PS417_01565 -2.9 -9.2 imidazole glycerol phosphate synthase compare
PS417_20160 -2.8 -3.2 cysteine synthase compare
PS417_01855 -2.8 -3.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_04415 -2.7 -8.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23800 -2.7 -12.1 ketol-acid reductoisomerase compare
PS417_20125 -2.6 -6.1 phosphoribosylglycinamide formyltransferase compare
PS417_06375 -2.5 -1.2 deoxycytidine triphosphate deaminase compare
PS417_23810 -2.4 -11.2 acetolactate synthase 3 catalytic subunit compare
PS417_23545 -2.3 -3.8 gamma-glutamyl kinase compare
PS417_28220 -2.3 -1.9 LysR family transcriptional regulator compare
PS417_00185 -2.3 -4.1 tryptophan synthase subunit beta compare
PS417_12290 -2.2 -7.8 sulfite reductase compare
PS417_04420 -2.2 -11.3 histidinol dehydrogenase compare
PS417_16465 -2.1 -10.2 sirohydrochlorin ferrochelatase compare
PS417_01580 -2.1 -1.8 imidazole glycerol phosphate synthase compare
PS417_02510 -2.1 -4.1 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23950 -2.1 -4.1 polynucleotide phosphorylase/polyadenylase compare
PS417_03560 -2.1 -3.0 GTP-binding protein compare
PS417_00180 -2.1 -4.7 tryptophan synthase subunit alpha compare
PS417_18600 -2.0 -3.0 isopropylmalate isomerase compare
PS417_23805 -2.0 -5.7 acetolactate synthase 3 regulatory subunit compare
PS417_26890 -2.0 -5.6 dihydroxy-acid dehydratase compare
PS417_18690 -2.0 -6.1 aromatic amino acid aminotransferase compare
PS417_12555 -1.9 -9.8 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_07170 -1.9 -4.3 hypothetical protein compare
PS417_27835 -1.9 -8.5 endoribonuclease compare
PS417_18560 -1.9 -6.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_01570 -1.8 -2.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_27705 -1.8 -2.2 amino acid dehydrogenase compare
PS417_02555 -1.7 -12.0 exoribonuclease R compare
PS417_18595 -1.6 -4.7 3-isopropylmalate dehydratase compare
PS417_25725 -1.6 -8.4 anthranilate synthase component I compare
PS417_22450 -1.6 -2.5 ATP-dependent DNA helicase RuvA compare
PS417_23995 -1.5 -1.1 preprotein translocase subunit SecG compare
PS417_17610 -1.5 -1.8 AsnC family transcriptional regulator compare
PS417_25715 -1.5 -5.6 anthranilate phosphoribosyltransferase compare
PS417_08620 -1.5 -1.4 hypothetical protein compare
PS417_08220 -1.5 -1.4 epimerase compare
PS417_23770 -1.5 -1.8 exodeoxyribonuclease V subunit alpha compare
PS417_23580 -1.4 -2.0 peptidylprolyl isomerase compare
PS417_01560 -1.4 -1.7 imidazoleglycerol-phosphate dehydratase compare
PS417_06680 -1.4 -7.9 nuclease PIN compare
PS417_23915 -1.4 -4.7 pantoate--beta-alanine ligase compare
PS417_21705 -1.4 -3.7 arginine N-succinyltransferase compare
PS417_26740 -1.4 -5.3 homoserine acetyltransferase compare
PS417_26745 -1.4 -4.7 methionine biosynthesis protein MetW compare
PS417_25720 -1.4 -4.5 anthranilate synthase component II compare
PS417_06645 -1.3 -7.1 RNA polymerase-associated protein RapA compare
PS417_13855 -1.3 -1.7 acetyl-CoA acetyltransferase compare
PS417_22620 -1.3 -4.6 pyruvate kinase compare
PS417_08580 -1.3 -7.2 histidine kinase compare
PS417_08135 -1.3 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_03310 -1.3 -4.8 carbonate dehydratase compare
PS417_07165 -1.3 -2.9 dihydrodipicolinate synthase compare
PS417_18585 -1.3 -3.8 3-isopropylmalate dehydrogenase compare
PS417_21125 -1.2 -5.2 phosphoadenosine phosphosulfate reductase compare
PS417_18530 -1.2 -5.0 O-succinylhomoserine sulfhydrylase compare
PS417_23370 -1.2 -4.4 protoheme IX farnesyltransferase compare
PS417_14065 -1.2 -5.6 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_22175 -1.2 -1.9 amino acid transporter LysE compare
PS417_26695 -1.2 -1.2 uracil phosphoribosyltransferase compare
PS417_23110 -1.2 -5.9 2-isopropylmalate synthase compare
PS417_05815 -1.1 -3.8 recombinase RecA compare
PS417_08590 -1.1 -1.7 hypothetical protein compare
PS417_20775 -1.1 -4.6 coproporphyrinogen III oxidase compare
PS417_17240 -1.1 -3.2 trigger factor compare
PS417_14515 -1.1 -1.8 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_23385 -1.1 -4.5 cytochrome o ubiquinol oxidase subunit I compare
PS417_22520 -1.1 -2.4 histidine kinase compare
PS417_23375 -1.1 -1.6 cytochrome C oxidase compare
PS417_16715 -1.1 -2.1 DoxX family protein compare
PS417_27870 -1.1 -2.6 ATP-dependent DNA helicase RecG compare
PS417_13870 -1.1 -3.3 hypothetical protein compare
PS417_08155 -1.1 -1.7 integration host factor subunit beta compare
PS417_13510 -1.1 -1.4 polyketide cyclase compare
PS417_26990 -1.0 -1.0 RNA pyrophosphohydrolase compare
PS417_10425 -1.0 -1.4 hypothetical protein compare
PS417_26815 -1.0 -2.4 peptidase M16 compare
PS417_18425 -1.0 -2.0 sporulation protein compare
PS417_19600 -1.0 -1.2 exonuclease compare
PS417_09210 -1.0 -1.1 TetR family transcriptional regulator compare
PS417_00385 -1.0 -1.1 Fur family transcriptional regulator compare
PS417_05695 -1.0 -4.7 transcriptional regulator compare
PS417_11615 -1.0 -1.6 urea ABC transporter ATP-binding protein compare
PS417_01965 -1.0 -1.9 fimbriae biosynthesis protein compare
PS417_26155 -1.0 -2.2 hypothetical protein compare
PS417_12560 -1.0 -5.1 MFS transporter compare
PS417_23105 -1.0 -1.1 hypothetical protein compare
PS417_12540 -1.0 -2.3 hypothetical protein compare
PS417_19755 -0.9 -1.5 flagellar motor switch protein FliM compare
PS417_09915 -0.9 -1.2 hypothetical protein compare
PS417_27445 -0.9 -6.2 membrane protein compare
PS417_18590 -0.9 -3.2 SAM-dependent methyltransferase compare
PS417_12390 -0.9 -2.3 hypothetical protein compare
PS417_02210 -0.9 -4.0 diguanylate cyclase compare
PS417_04270 -0.9 -4.9 ribonuclease G compare
PS417_00535 -0.9 -3.0 Holliday junction resolvase compare
PS417_19605 -0.9 -1.3 hypothetical protein compare
PS417_22990 -0.9 -1.5 iron dicitrate transport regulator FecR compare
PS417_27585 -0.9 -2.7 diaminopimelate epimerase compare
PS417_24465 -0.9 -4.2 metallopeptidase compare
PS417_23380 -0.9 -1.7 cytochrome o ubiquinol oxidase subunit III compare
PS417_28070 -0.9 -3.5 phosphate ABC transporter ATP-binding protein compare
PS417_21630 -0.9 -1.9 magnesium transporter compare
PS417_27865 -0.9 -2.0 LysR family transcriptional regulator compare
PS417_02270 -0.9 -2.5 carbamoyltransferase compare
PS417_19800 -0.9 -1.8 flagellar motor switch protein FliG compare
PS417_00085 -0.9 -2.4 16S rRNA methyltransferase compare
PS417_19425 -0.9 -0.8 allantoicase compare
PS417_17945 -0.9 -0.9 hypothetical protein compare
PS417_28230 -0.9 -1.4 transcriptional regulator compare
PS417_04390 -0.9 -4.4 toluene tolerance protein compare
PS417_04180 -0.9 -3.8 GntR family transcriptional regulator compare
PS417_11400 -0.9 -1.7 phosphoglycerate mutase compare
PS417_14710 -0.9 -1.4 isochorismatase compare
PS417_10985 -0.9 -0.9 NADH:flavin oxidoreductase compare
PS417_06540 -0.9 -1.3 membrane protein compare
PS417_19955 -0.9 -2.0 hypothetical protein compare
PS417_18720 -0.8 -3.5 endonuclease compare
PS417_07710 -0.8 -5.1 membrane protein compare
PS417_21430 -0.8 -1.6 3-oxoacyl-ACP synthase compare
PS417_25815 -0.8 -3.1 magnesium transporter ApaG compare
PS417_16555 -0.8 -1.7 cupin compare
PS417_08185 -0.8 -3.0 glycosyl transferase compare
PS417_04385 -0.8 -2.8 organic solvent ABC transporter substrate-binding protein compare
PS417_13735 -0.8 -1.3 hypothetical protein compare
PS417_17215 -0.8 -3.3 peptidylprolyl isomerase compare
PS417_04275 -0.8 -6.3 hypothetical protein compare
PS417_19500 -0.8 -2.8 antibiotic synthesis protein MbtH compare
PS417_19645 -0.8 -1.9 chemotaxis protein compare
PS417_23410 -0.8 -2.7 membrane protein compare
PS417_05475 -0.8 -2.1 arginase compare
PS417_22850 -0.8 -4.0 virulence factor family protein compare
PS417_07400 -0.8 -1.7 hypothetical protein compare
PS417_06845 -0.8 -1.4 lipoprotein compare
PS417_23170 -0.8 -1.3 FeS assembly protein IscX compare
PS417_22695 -0.8 -4.2 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_03260 -0.8 -1.6 5S ribosomal RNA compare
PS417_23390 -0.8 -3.5 ubiquinol oxidase subunit II compare
PS417_06145 -0.8 -1.0 hypothetical protein compare
PS417_12565 -0.8 -1.2 2-dehydro-3-deoxygluconokinase compare
PS417_00195 -0.8 -1.1 hypothetical protein compare
PS417_22580 -0.8 -2.2 membrane protein compare
PS417_10840 -0.8 -1.7 amidase compare
PS417_03815 -0.8 -2.7 DNA transporter compare
PS417_09235 -0.8 -1.0 molecular chaperone compare
PS417_06745 -0.8 -1.0 polysaccharide deacetylase compare
PS417_03100 -0.8 -1.1 pilus assembly protein compare
PS417_02950 -0.7 -1.0 tRNA-dihydrouridine synthase B compare
PS417_16100 -0.7 -2.9 antibiotic biosynthesis monooxygenase compare
PS417_11175 -0.7 -1.9 AraC family transcriptional regulator compare
PS417_23900 -0.7 -3.7 poly(A) polymerase compare
PS417_25650 -0.7 -2.8 anhydro-N-acetylmuramic acid kinase compare
PS417_10015 -0.7 -1.0 hypothetical protein compare
PS417_19415 -0.7 -2.3 allantoinase compare
PS417_06530 -0.7 -1.4 membrane protein compare
PS417_22700 -0.7 -2.4 RNA polymerase subunit sigma-24 compare
PS417_05830 -0.7 -2.6 hypothetical protein compare
PS417_23775 -0.7 -1.1 exodeoxyribonuclease V subunit beta compare
PS417_04410 -0.7 -1.0 hypothetical protein compare
PS417_07985 -0.7 -1.1 AbrB family transcriptional regulator compare
PS417_23205 -0.7 -3.1 transcriptional regulator compare
PS417_22840 -0.7 -1.0 tRNA-Met compare
PS417_15465 -0.7 -1.7 carboxynorspermidine decarboxylase compare
PS417_09730 -0.7 -1.9 adenylylsulfate kinase compare
PS417_08540 -0.7 -2.0 RNA helicase compare
PS417_07015 -0.7 -2.3 helicase compare
PS417_13145 -0.7 -0.7 50S ribosomal protein L21 compare
PS417_26730 -0.7 -0.4 pyrroline-5-carboxylate reductase compare
PS417_27940 -0.7 -0.9 type VI secretion protein compare
PS417_17445 -0.7 -2.0 sulfur oxidation protein SoxZ compare
PS417_21000 -0.6 -1.6 CrfX protein compare
PS417_12310 -0.6 -3.1 methionine synthase compare
PS417_11360 -0.6 -2.4 energy transducer TonB compare
PS417_10245 -0.6 -0.8 hypothetical protein compare
PS417_17580 -0.6 -2.0 citrulline utilization hydrolase (from data) compare
PS417_28515 -0.6 -2.1 16S rRNA methyltransferase compare
PS417_26190 -0.6 -3.3 sarcosine oxidase subunit beta compare
PS417_22005 -0.6 -1.7 epimerase compare
PS417_01285 -0.6 -1.4 haloacid dehalogenase compare
PS417_27800 -0.6 -2.8 exodeoxyribonuclease III compare


Specific Phenotypes

For 1 genes in this experiment

For exudates Brachypodium distachyon 13-day exudates in Pseudomonas simiae WCS417

For exudates Brachypodium distachyon 13-day exudates across organisms