Experiment set7IT042 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

200 most important genes:

  gene name fitness t score description  
PS417_24155 -5.4 -6.5 ATP-binding protein compare
PS417_27795 -4.1 -1.5 orotate phosphoribosyltransferase compare
PS417_24745 -3.8 -7.2 gamma-glutamyl phosphate reductase compare
PS417_23545 -3.8 -3.9 gamma-glutamyl kinase compare
PS417_27040 -3.7 -3.9 3-phosphoglycerate dehydrogenase compare
PS417_00180 -3.7 -4.3 tryptophan synthase subunit alpha compare
PS417_02415 -3.3 -7.9 phosphoserine phosphatase compare
PS417_27195 -3.3 -2.4 N-acetylglutamate synthase compare
PS417_02510 -3.2 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_20160 -3.2 -4.8 cysteine synthase compare
PS417_05595 -3.2 -9.6 ornithine carbamoyltransferase compare
PS417_01560 -3.1 -5.0 imidazoleglycerol-phosphate dehydratase compare
PS417_23995 -3.0 -1.5 preprotein translocase subunit SecG compare
PS417_27435 -3.0 -9.0 polyphosphate kinase compare
PS417_01605 -3.0 -2.6 phosphoglycerate mutase compare
PS417_04415 -3.0 -7.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_20985 -2.9 -4.7 porin compare
PS417_23770 -2.9 -3.3 exodeoxyribonuclease V subunit alpha compare
PS417_20125 -2.7 -5.3 phosphoribosylglycinamide formyltransferase compare
PS417_01575 -2.7 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01565 -2.7 -6.1 imidazole glycerol phosphate synthase compare
PS417_25710 -2.6 -1.9 indole-3-glycerol-phosphate synthase compare
PS417_07170 -2.6 -4.8 hypothetical protein compare
PS417_08125 -2.5 -2.0 prephenate dehydratase compare
PS417_01850 -2.5 -6.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_22450 -2.4 -2.6 ATP-dependent DNA helicase RuvA compare
PS417_06375 -2.4 -1.2 deoxycytidine triphosphate deaminase compare
PS417_00185 -2.4 -6.0 tryptophan synthase subunit beta compare
PS417_22690 -2.4 -3.8 phosphogluconate dehydratase compare
PS417_04420 -2.4 -10.6 histidinol dehydrogenase compare
PS417_01855 -2.3 -2.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_01580 -2.3 -2.1 imidazole glycerol phosphate synthase compare
PS417_01570 -2.3 -3.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_23950 -2.2 -3.1 polynucleotide phosphorylase/polyadenylase compare
PS417_18600 -2.1 -4.4 isopropylmalate isomerase compare
PS417_26990 -2.1 -1.8 RNA pyrophosphohydrolase compare
PS417_26890 -1.9 -6.9 dihydroxy-acid dehydratase compare
PS417_23810 -1.9 -11.1 acetolactate synthase 3 catalytic subunit compare
PS417_12855 -1.9 -5.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23800 -1.9 -11.3 ketol-acid reductoisomerase compare
PS417_01915 -1.9 -1.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_28220 -1.8 -2.9 LysR family transcriptional regulator compare
PS417_18560 -1.8 -6.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_02005 -1.8 -10.6 glutamate synthase compare
PS417_26995 -1.7 -7.7 phosphoserine phosphatase compare
PS417_07165 -1.7 -4.0 dihydrodipicolinate synthase compare
PS417_27870 -1.7 -4.1 ATP-dependent DNA helicase RecG compare
PS417_08185 -1.7 -5.6 glycosyl transferase compare
PS417_23805 -1.6 -5.3 acetolactate synthase 3 regulatory subunit compare
PS417_22520 -1.6 -3.8 histidine kinase compare
PS417_23775 -1.6 -1.7 exodeoxyribonuclease V subunit beta compare
PS417_02000 -1.6 -9.5 glutamate synthase compare
PS417_27835 -1.5 -6.9 endoribonuclease compare
PS417_18530 -1.5 -4.6 O-succinylhomoserine sulfhydrylase compare
PS417_06530 -1.5 -3.0 membrane protein compare
PS417_22300 -1.5 -1.9 LTXXQ domain protein compare
PS417_16465 -1.5 -6.3 sirohydrochlorin ferrochelatase compare
PS417_18595 -1.5 -3.4 3-isopropylmalate dehydratase compare
PS417_12290 -1.5 -5.5 sulfite reductase compare
PS417_18585 -1.4 -5.3 3-isopropylmalate dehydrogenase compare
PS417_25715 -1.4 -5.1 anthranilate phosphoribosyltransferase compare
PS417_14140 -1.4 -3.0 membrane protein compare
PS417_08245 -1.4 -1.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_19645 -1.4 -2.8 chemotaxis protein compare
PS417_03560 -1.4 -2.3 GTP-binding protein compare
PS417_26745 -1.4 -4.8 methionine biosynthesis protein MetW compare
PS417_21625 -1.3 -1.5 DNA-binding protein compare
PS417_02555 -1.3 -9.7 exoribonuclease R compare
PS417_23110 -1.3 -7.4 2-isopropylmalate synthase compare
PS417_10015 -1.3 -1.5 hypothetical protein compare
PS417_19600 -1.3 -1.3 exonuclease compare
PS417_18690 -1.2 -2.8 aromatic amino acid aminotransferase compare
PS417_21125 -1.2 -5.5 phosphoadenosine phosphosulfate reductase compare
PS417_26740 -1.2 -5.6 homoserine acetyltransferase compare
PS417_06680 -1.2 -6.2 nuclease PIN compare
PS417_13010 -1.2 -1.9 alpha/beta hydrolase compare
PS417_05010 -1.2 -2.1 IclR family transcriptional regulator compare
PS417_16560 -1.1 -1.9 GNAT family acetyltransferase compare
PS417_17565 -1.1 -2.1 branched-chain amino acid aminotransferase compare
PS417_08225 -1.1 -4.6 acetolactate synthase compare
PS417_15710 -1.1 -2.5 nitrate reductase compare
PS417_15705 -1.1 -2.0 nitrate reductase compare
PS417_05695 -1.1 -4.2 transcriptional regulator compare
PS417_22445 -1.1 -3.0 ATP-dependent DNA helicase RuvB compare
PS417_08230 -1.1 -2.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_11830 -1.1 -2.5 membrane protein compare
PS417_22620 -1.1 -4.5 pyruvate kinase compare
PS417_06645 -1.1 -6.3 RNA polymerase-associated protein RapA compare
PS417_08515 -1.0 -1.9 hypothetical protein compare
PS417_11175 -1.0 -2.9 AraC family transcriptional regulator compare
PS417_20170 -1.0 -2.6 hypothetical protein compare
PS417_22840 -1.0 -1.9 tRNA-Met compare
PS417_08135 -1.0 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_25725 -1.0 -5.0 anthranilate synthase component I compare
PS417_08200 -1.0 -3.3 hypothetical protein compare
PS417_05790 -1.0 -3.1 hypothetical protein compare
PS417_08195 -1.0 -6.8 hypothetical protein compare
PS417_13725 -1.0 -3.0 membrane protein compare
PS417_08540 -1.0 -2.7 RNA helicase compare
PS417_27585 -1.0 -1.8 diaminopimelate epimerase compare
PS417_19095 -1.0 -1.4 hypothetical protein compare
PS417_16555 -1.0 -1.4 cupin compare
PS417_04375 -1.0 -2.1 ABC transporter ATP-binding protein compare
PS417_05785 -1.0 -2.4 tail protein compare
PS417_20635 -1.0 -1.0 ABC transporter ATP-binding protein compare
PS417_13870 -1.0 -2.4 hypothetical protein compare
PS417_04305 -1.0 -1.6 aspartate ammonia-lyase compare
PS417_00195 -1.0 -1.7 hypothetical protein compare
PS417_10600 -0.9 -1.2 hypothetical protein compare
PS417_10220 -0.9 -3.4 hypothetical protein compare
PS417_14805 -0.9 -1.8 AraC family transcriptional regulator compare
PS417_27300 -0.9 -1.0 cell division protein ZapA compare
PS417_27705 -0.9 -1.5 amino acid dehydrogenase compare
PS417_23900 -0.9 -4.6 poly(A) polymerase compare
PS417_21000 -0.9 -1.7 CrfX protein compare
PS417_25720 -0.9 -2.7 anthranilate synthase component II compare
PS417_06895 -0.9 -2.9 DNA-binding protein compare
PS417_28265 -0.9 -2.2 pyridoxamine kinase compare
PS417_23150 -0.9 -2.3 Cro/Cl family transcriptional regulator compare
PS417_08205 -0.9 -3.0 acetyltransferase compare
PS417_05860 -0.9 -2.0 hypothetical protein compare
PS417_00755 -0.9 -0.7 biofilm PGA synthesis protein PgaD compare
PS417_03465 -0.9 -1.2 type III secretion protein compare
PS417_19190 -0.9 -2.0 BolA family transcriptional regulator compare
PS417_00385 -0.9 -1.0 Fur family transcriptional regulator compare
PS417_06355 -0.9 -2.1 protein-L-isoaspartate O-methyltransferase compare
PS417_09235 -0.9 -1.1 molecular chaperone compare
PS417_24575 -0.9 -1.1 hypothetical protein compare
PS417_11535 -0.9 -1.7 nicotinate phosphoribosyltransferase compare
PS417_08090 -0.9 -1.0 3-oxoacyl-ACP reductase compare
PS417_08685 -0.9 -1.4 flagellar hook-length control protein FliK compare
PS417_05445 -0.9 -1.3 DNA mismatch repair protein MutT compare
PS417_18540 -0.8 -2.7 colicin V production CvpA compare
PS417_08190 -0.8 -6.4 membrane protein compare
PS417_08545 -0.8 -1.3 aromatic ring-opening dioxygenase LigB compare
PS417_00085 -0.8 -1.9 16S rRNA methyltransferase compare
PS417_26155 -0.8 -2.1 hypothetical protein compare
PS417_02210 -0.8 -2.7 diguanylate cyclase compare
PS417_04270 -0.8 -4.0 ribonuclease G compare
PS417_26725 -0.8 -3.5 hypothetical protein compare
PS417_00075 -0.8 -1.9 hypothetical protein compare
PS417_09865 -0.8 -1.5 hypothetical protein compare
PS417_23135 -0.8 -1.2 GTP-binding protein compare
PS417_23915 -0.8 -2.1 pantoate--beta-alanine ligase compare
PS417_12375 -0.8 -2.0 serine/threonine protein phosphatase compare
PS417_00650 -0.8 -0.7 LysR family transcriptional regulator compare
PS417_09010 -0.8 -2.1 phosphohistidine phosphatase compare
PS417_10920 -0.8 -1.3 LysR family transcriptional regulator compare
PS417_17070 -0.8 -1.4 RNA polymerase subunit sigma-24 compare
PS417_18310 -0.8 -1.3 hypothetical protein compare
PS417_26190 -0.8 -3.4 sarcosine oxidase subunit beta compare
PS417_10275 -0.8 -1.9 histidine kinase compare
PS417_06710 -0.8 -0.6 beta-ketoadipyl CoA thiolase compare
PS417_16275 -0.8 -1.6 hypothetical protein compare
PS417_22570 -0.8 -0.7 H-NS histone compare
PS417_20205 -0.8 -2.6 LysR family transcriptional regulator compare
PS417_22565 -0.8 -1.0 formyltetrahydrofolate deformylase compare
PS417_18860 -0.8 -1.9 transcriptional regulator compare
PS417_16710 -0.8 -2.1 hydrolase compare
PS417_21705 -0.7 -2.7 arginine N-succinyltransferase compare
PS417_26985 -0.7 -4.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_16415 -0.7 -3.7 tRNA 2-thiocytidine biosynthesis protein TtcA compare
PS417_13525 -0.7 -2.5 membrane protein compare
PS417_06200 -0.7 -3.2 protein-PII uridylyltransferase compare
PS417_08220 -0.7 -0.9 epimerase compare
PS417_05120 -0.7 -2.0 RNA polymerase subunit sigma-24 compare
PS417_12845 -0.7 -2.8 NAD(P)H dehydrogenase compare
PS417_08410 -0.7 -1.3 hypothetical protein compare
PS417_21630 -0.7 -1.4 magnesium transporter compare
PS417_15135 -0.7 -1.1 hypothetical protein compare
PS417_02950 -0.7 -1.3 tRNA-dihydrouridine synthase B compare
PS417_02365 -0.7 -2.6 hypothetical protein compare
PS417_21355 -0.7 -1.8 hypothetical protein compare
PS417_07620 -0.7 -1.1 beta-hexosaminidase compare
PS417_00175 -0.7 -0.9 CigR compare
PS417_03310 -0.7 -2.9 carbonate dehydratase compare
PS417_20665 -0.7 -3.6 hypothetical protein compare
PS417_20080 -0.7 -2.6 peptidase P60 compare
PS417_18040 -0.7 -1.2 general secretion pathway protein GspN compare
PS417_18425 -0.7 -1.4 sporulation protein compare
PS417_02575 -0.7 -2.1 membrane protein compare
PS417_10865 -0.7 -1.5 GNAT family acetyltransferase compare
PS417_18760 -0.7 -2.6 hypothetical protein compare
PS417_17685 -0.7 -2.0 allantoate amidohydrolase compare
PS417_19675 -0.7 -2.5 chemotaxis protein CheY compare
PS417_22935 -0.7 -1.4 hypothetical protein compare
PS417_07710 -0.7 -3.7 membrane protein compare
PS417_02805 -0.7 -1.1 urease subunit gamma compare
PS417_13730 -0.7 -1.3 hypothetical protein compare
PS417_13145 -0.7 -1.4 50S ribosomal protein L21 compare
PS417_09775 -0.7 -2.1 DeoR faimly transcriptional regulator compare
PS417_23375 -0.7 -1.4 cytochrome C oxidase compare
PS417_12455 -0.7 -1.4 hydrolase compare
PS417_20775 -0.7 -2.4 coproporphyrinogen III oxidase compare
PS417_04650 -0.7 -1.1 D-alanine--D-alanine ligase compare
PS417_02175 -0.6 -1.7 transcriptional regulator compare
PS417_27865 -0.6 -1.5 LysR family transcriptional regulator compare
PS417_23845 -0.6 -2.6 hemin ABC transporter ATP-binding protein compare
PS417_04410 -0.6 -1.5 hypothetical protein compare
PS417_19425 -0.6 -0.6 allantoicase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms