Experiment set7IT042 for Pseudomonas putida KT2440

Compare to:

4-Aminobutyric acid 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.1 -3.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3505 -6.0 -3.2 conserved protein of unknown function compare
PP_4890 -4.9 -6.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_1988 -4.9 -9.9 3-isopropylmalate dehydrogenase compare
PP_0411 -4.5 -7.0 Polyamine ABC transporter, ATP-binding protein compare
PP_4678 -4.5 -14.3 Ketol-acid reductoisomerase compare
PP_4679 -4.5 -8.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0291 -4.4 -4.1 conserved protein of unknown function compare
PP_t12 -4.4 -1.3 tRNA-Thr compare
PP_0082 -4.4 -6.0 tryptophan synthase alpha chain compare
PP_0422 -4.3 -4.7 Indole-3-glycerol phosphate synthase compare
PP_1986 -4.3 -3.0 3-isopropylmalate dehydratase small subunit compare
PP_0965 -4.3 -10.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0967 -4.2 -8.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0289 -4.1 -8.9 Imidazoleglycerol-phosphate dehydratase compare
PP_4943 -4.0 -2.7 putative Glycosyl transferase compare
PP_1995 -4.0 -7.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1985 -4.0 -3.8 3-isopropylmalate dehydratase large subunit compare
PP_5289 -4.0 -4.9 Acetylglutamate kinase compare
PP_5705 -3.9 -2.8 protein of unknown function compare
PP_4696 -3.9 -5.3 Nitrogen regulation protein NR(I) compare
PP_0290 -3.8 -7.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5185 -3.8 -6.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4680 -3.8 -11.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -3.7 -13.4 Anthranilate synthase component 1 compare
PP_0414 -3.7 -3.6 Polyamine ABC transporter, permease protein compare
PP_0966 -3.6 -7.4 Histidinol dehydrogenase compare
PP_0184 -3.5 -6.4 Argininosuccinate lyase compare
PP_0292 -3.5 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5128 -3.5 -6.7 Dihydroxy-acid dehydratase compare
PP_0691 -3.4 -4.0 Glutamate 5-kinase compare
PP_4910 -3.4 -3.2 conserved protein of unknown function compare
PP_3511 -3.4 -6.5 Branched-chain-amino-acid aminotransferase compare
PP_4196 -3.4 -2.5 conserved exported protein of unknown function compare
PP_0214 -3.3 -7.9 4-aminobutyrate aminotransferase compare
PP_1088 -3.3 -8.6 Argininosuccinate synthase compare
PP_5095 -3.2 -1.9 pyrroline-5-carboxylate reductase compare
PP_0412 -3.1 -6.5 Polyamine ABC transporter, periplasmic polyamine-binding protein conserved
PP_0421 -3.0 -5.6 Anthranilate phosphoribosyltransferase compare
PP_5015 -3.0 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2370 -2.9 -2.0 conserved protein of unknown function compare
PP_3110 -2.9 -3.0 protein of unknown function compare
PP_0410 -2.9 -4.4 DNA-binding response regulator UhpA compare
PP_0413 -2.9 -9.1 Polyamine ABC transporter, permease protein compare
PP_0420 -2.8 -7.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1079 -2.8 -4.4 Ornithine carbamoyltransferase compare
PP_2388 -2.7 -3.6 Transporter, LysE family compare
PP_1716 -2.7 -1.6 Transcriptional regulator, Cro/CI family compare
PP_0719 -2.6 -1.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1025 -2.6 -7.7 2-isopropylmalate synthase compare
PP_4364 -2.5 -2.9 putative Anti-sigma F factor antagonist compare
PP_4940 -2.4 -5.0 Putative glycosyltransferase compare
PP_0787 -2.4 -3.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4909 -2.3 -4.7 phosphoserine phosphatase compare
PP_0213 -2.3 -4.7 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_5338 -2.3 -2.2 aspartate ammonia-lyase compare
PP_1231 -2.3 -4.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5571 -2.2 -1.3 conserved protein of unknown function compare
PP_2328 -2.2 -4.6 Phosphoadenosine phosphosulfate reductase compare
PP_4723 -2.2 -7.9 Carbamoyl-phosphate synthase large chain compare
PP_0083 -2.2 -4.4 tryptophan synthase beta chain compare
PP_5337 -2.2 -4.1 LysR family transcriptional regulator compare
PP_2371 -2.2 -4.1 Sulphite reductase hemoprotein, beta subunit compare
PP_4517 -1.9 -2.0 conserved protein of unknown function compare
PP_1729 -1.9 -1.3 conserved protein of unknown function compare
PP_0048 -1.9 -1.3 conserved protein of unknown function compare
PP_3052 -1.9 -1.2 conserved protein of unknown function compare
PP_1679 -1.9 -2.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5098 -1.9 -3.7 methionine biosynthesis protein MetW compare
PP_4238 -1.8 -1.4 conserved protein of unknown function compare
PP_4482 -1.8 -3.1 Transcriptional regulator, AraC family compare
PP_2337 -1.8 -2.7 aconitate isomerase compare
PP_3880 -1.8 -1.5 conserved exported protein of unknown function compare
PP_3064 -1.8 -1.8 Phage tail protein compare
PP_5575 -1.8 -1.5 conserved protein of unknown function compare
PP_3035 -1.8 -2.1 conserved protein of unknown function compare
PP_3821 -1.8 -5.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5097 -1.7 -6.5 homoserine O-acetyltransferase compare
PP_5014 -1.7 -1.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_1271 -1.7 -2.6 putative Multidrug efflux MFS transporter compare
PP_4356 -1.6 -2.3 Flagellar protein FliO compare
PP_4124 -1.5 -3.8 NADH-quinone oxidoreductase subunit G compare
PP_0409 -1.5 -4.8 Sensory box histidine kinase compare
PP_4591 -1.5 -2.9 Ribonuclease D compare
PP_0401 -1.5 -2.0 Ribosomal RNA small subunit methyltransferase A compare
PP_5155 -1.5 -3.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2426 -1.5 -3.5 coniferyl alcohol dehydrogenase compare
PP_3999 -1.5 -4.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1609 -1.5 -1.9 conserved protein of unknown function compare
PP_5303 -1.5 -3.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2543 -1.5 -5.3 gamma-aminobutyrate permease compare
PP_2373 -1.5 -2.3 conserved protein of unknown function compare
PP_4829 -1.5 -1.6 putative precorrin-3B synthase compare
PP_1109 -1.4 -7.8 Transcriptional regulator, GntR family compare
PP_1812 -1.4 -1.4 conserved protein of unknown function compare
PP_5274 -1.4 -1.3 conserved protein of unknown function compare
PP_4826 -1.4 -3.2 Precorrin-3B C17-methyltransferase compare
PP_0630 -1.4 -1.0 DNA gyrase inhibitor YacG compare
PP_3512 -1.4 -2.8 conserved membrane protein of unknown function compare
PP_2681 -1.4 -1.0 coenzyme PQQ synthesis protein D compare
PP_5093 -1.4 -1.3 twitching motility protein compare
PP_0127 -1.4 -3.8 Thiol:disulfide interchange protein compare
PP_4362 -1.4 -1.6 conserved protein of unknown function compare
PP_2402 -1.4 -1.6 putative Sensor histidine kinase compare
PP_4693 -1.4 -3.6 RNA polymerase-binding transcription factor DksA compare
PP_2152 -1.4 -1.8 glycerophosphoryl diester phosphodiesterase compare
PP_4724 -1.3 -2.3 Carbamoyl-phosphate synthase small chain compare
PP_1366 -1.3 -1.2 Transcriptional regulator MvaT, P16 subunit compare
PP_2327 -1.3 -3.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1493 -1.3 -1.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3017 -1.3 -3.2 O6-methylguanine-DNA methyltransferase compare
PP_5639 -1.3 -4.6 conserved exported protein of unknown function compare
PP_4120 -1.3 -2.3 NADH-quinone oxidoreductase subunit B compare
PP_2029 -1.2 -1.1 von Willebrand factor type A domain protein compare
PP_2378 -1.2 -1.8 Fe/S biogenesis protein NfuA compare
PP_2459 -1.2 -2.1 ribose pyranase compare
PP_2032 -1.2 -2.9 putative ATPase compare
PP_3398 -1.2 -1.0 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1328 -1.2 -0.6 Protein MraZ compare
PP_2001 -1.2 -3.2 O-succinylhomoserine sulfhydrylase compare
PP_4168 -1.2 -1.4 conserved protein of unknown function compare
PP_3392 -1.2 -1.4 conserved protein of unknown function compare
PP_1012 -1.2 -2.3 DNA-binding response regulator compare
PP_1216 -1.2 -1.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0925 -1.2 -2.2 conserved protein of unknown function compare
PP_0003 -1.2 -1.5 16S RNA methyltransferase compare
PP_1468 -1.1 -1.4 Tyrosine recombinase XerD compare
PP_1677 -1.1 -2.6 Adenosyl-cobyric acid synthase compare
PP_3506 -1.1 -1.8 Magnesium chelatase, subunit ChII compare
PP_0232 -1.1 -0.9 ATP-binding taurine transporter subunit compare
PP_0888 -1.1 -1.2 Photosynthetic apparatus regulatory protein RegA compare
PP_1475 -1.1 -2.4 CAIB/BAIF family protein compare
PP_2793 -1.1 -1.2 Acyl-CoA dehydrogenase family protein compare
PP_2581 -1.1 -1.0 conserved protein of unknown function compare
PP_4804 -1.1 -2.5 RlpA-like lipoprotein compare
PP_4368 -1.1 -2.8 flagellar motor switch protein compare
PP_4700 -1.1 -0.7 pantothenate synthetase compare
PP_0276 -1.1 -0.8 Transcriptional regulator, Cro/CI family compare
PP_5441 -1.1 -2.7 protein of unknown function compare
PP_1734 -1.1 -2.1 Probable septum site-determining protein MinC compare
PP_5589 -1.1 -2.1 protein of unknown function containing Rhs repeat-associated core domain compare
PP_0565 -1.1 -3.5 putative enzyme compare
PP_1110 -1.1 -1.5 serine acetyltransferase compare
PP_0916 -1.1 -1.5 Amino acid transporter LysE compare
PP_1702 -1.1 -2.3 Recombination-associated protein RdgC compare
PP_4760 -1.1 -2.6 Alcohol dehydrogenase, zinc-containing compare
PP_3234 -1.1 -1.6 Heat shock protein, HSP20 family compare
PP_3509 -1.0 -2.3 Glyoxalase family protein compare
PP_5427 -1.0 -3.4 conserved exported protein of unknown function compare
PP_0801 -1.0 -1.0 conserved exported protein of unknown function compare
PP_1147 -1.0 -2.0 conserved protein of unknown function compare
PP_2878 -1.0 -1.3 conserved protein of unknown function compare
PP_4937 -1.0 -2.2 toluene tolerance protein compare
PP_4569 -1.0 -1.8 conserved protein of unknown function compare
PP_1503 -1.0 -2.0 conserved protein of unknown function compare
PP_3648 -1.0 -2.0 Carboxymuconolactone decarboxylase family protein compare
PP_1111 -1.0 -2.3 putative Synthetase compare
PP_5279 -1.0 -1.7 conserved protein of unknown function compare
PP_1635 -1.0 -2.6 DNA-binding response regulator compare
PP_0087 -1.0 -1.6 conserved exported protein of unknown function compare
PP_3315 -1.0 -1.6 conserved membrane protein of unknown function compare
PP_5217 -1.0 -6.1 Polyphosphate kinase compare
PP_2903 -1.0 -1.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5456 -1.0 -1.1 conserved protein of unknown function compare
PP_2087 -1.0 -1.6 CmpX protein compare
PP_3098 -1.0 -0.9 conserved protein of unknown function compare
PP_0064 -1.0 -2.3 conserved protein of unknown function compare
PP_1683 -1.0 -1.1 Transcriptional regulator, MarR family compare
PP_2542 -1.0 -3.8 Transcriptional regulator, GntR family compare
PP_4156 -1.0 -2.1 Transcriptional regulator, LysR family compare
PP_3487 -1.0 -1.3 conserved exported protein of unknown function compare
PP_1664 -1.0 -1.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_1217 -1.0 -2.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4847 -1.0 -1.1 chaperone modulatory of CbpA co-chaperone protein compare
PP_2536 -1.0 -2.7 Glutathione S-transferase family protein compare
PP_0339 -0.9 -1.3 Pyruvate dehydrogenase E1 component compare
PP_4871 -0.9 -2.5 putative lysine decarboxylase family protein compare
PP_1314 -0.9 -2.9 putative NAD(P)-linked reductase compare
PP_4126 -0.9 -0.9 NADH-quinone oxidoreductase subunit I compare
PP_4848 -0.9 -0.9 Curved DNA-binding protein compare
PP_5227 -0.9 -2.7 diaminopimelate decarboxylase compare
PP_1097 -0.9 -1.1 Methionine--tRNA ligase compare
PP_4870 -0.9 -1.7 Azurin compare
PP_2118 -0.9 -1.3 conserved protein of unknown function compare
PP_4069 -0.9 -1.6 conserved protein of unknown function compare
PP_3508 -0.9 -1.8 Protein CobW compare
PP_2715 -0.9 -2.0 ArsH protein compare
PP_5519 -0.9 -0.9 conserved protein of unknown function of phage origin compare
PP_0874 -0.9 -0.6 conserved protein of unknown function compare
PP_2137 -0.9 -0.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_2701 -0.9 -2.3 Transcriptional regulator, LysR family compare
PP_1906 -0.9 -1.8 ribosomal large subunit pseudouridine synthase C compare
PP_5202 -0.9 -1.0 putative cell division protein compare
PP_0377 -0.9 -0.8 coenzyme PQQ synthesis protein D compare
PP_5525 -0.9 -1.4 conserved exported protein of unknown function compare
PP_5090 -0.9 -0.7 putative cell division protein compare
PP_3192 -0.9 -1.6 conserved protein of unknown function compare
PP_1629 -0.9 -3.2 Protein RecA compare
PP_4891 -0.9 -2.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2585 -0.9 -2.3 Alpha-ketoglutaric semialdehyde dehydrogenase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source 4-Aminobutyric acid in Pseudomonas putida KT2440

For carbon source 4-Aminobutyric acid across organisms