Experiment set7IT039 for Pseudomonas simiae WCS417

Compare to:

LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

200 most important genes:

  gene name fitness t score description  
PS417_24155 -5.8 -6.9 ATP-binding protein compare
PS417_08125 -5.5 -2.0 prephenate dehydratase compare
PS417_20985 -4.1 -5.3 porin compare
PS417_23770 -2.7 -2.8 exodeoxyribonuclease V subunit alpha compare
PS417_22565 -2.4 -2.0 formyltetrahydrofolate deformylase compare
PS417_06375 -2.0 -1.2 deoxycytidine triphosphate deaminase compare
PS417_27795 -1.9 -1.3 orotate phosphoribosyltransferase compare
PS417_02280 -1.8 -2.8 GlcNAc-PI de-N-acetylase compare
PS417_03560 -1.8 -2.8 GTP-binding protein compare
PS417_06680 -1.8 -10.8 nuclease PIN compare
PS417_27870 -1.7 -3.8 ATP-dependent DNA helicase RecG compare
PS417_08135 -1.7 -7.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02975 -1.6 -3.9 3-dehydroquinate dehydratase compare
PS417_08220 -1.6 -1.5 epimerase compare
PS417_05695 -1.5 -7.6 transcriptional regulator compare
PS417_27800 -1.5 -6.6 exodeoxyribonuclease III compare
PS417_26990 -1.5 -2.1 RNA pyrophosphohydrolase compare
PS417_13735 -1.4 -1.8 hypothetical protein compare
PS417_02555 -1.4 -9.7 exoribonuclease R compare
PS417_16715 -1.3 -2.1 DoxX family protein compare
PS417_28070 -1.3 -7.3 phosphate ABC transporter ATP-binding protein compare
PS417_06530 -1.3 -3.3 membrane protein compare
PS417_23375 -1.3 -2.5 cytochrome C oxidase compare
PS417_10220 -1.3 -4.6 hypothetical protein compare
PS417_04365 -1.3 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_27585 -1.3 -2.2 diaminopimelate epimerase compare
PS417_23580 -1.3 -2.0 peptidylprolyl isomerase compare
PS417_22520 -1.3 -3.1 histidine kinase compare
PS417_24615 -1.3 -1.5 hypothetical protein compare
PS417_09235 -1.3 -1.5 molecular chaperone compare
PS417_02270 -1.2 -4.4 carbamoyltransferase compare
PS417_20125 -1.2 -2.5 phosphoribosylglycinamide formyltransferase compare
PS417_01435 -1.2 -1.6 hypothetical protein compare
PS417_18395 -1.2 -2.5 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_23380 -1.2 -2.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_17945 -1.2 -1.1 hypothetical protein compare
PS417_01965 -1.1 -1.9 fimbriae biosynthesis protein compare
PS417_19275 -1.1 -1.8 hypothetical protein compare
PS417_27705 -1.1 -1.8 amino acid dehydrogenase compare
PS417_23775 -1.1 -1.8 exodeoxyribonuclease V subunit beta compare
PS417_19350 -1.1 -4.0 GTP cyclohydrolase compare
PS417_12660 -1.1 -1.8 hypothetical protein compare
PS417_06355 -1.1 -2.5 protein-L-isoaspartate O-methyltransferase compare
PS417_20880 -1.1 -2.2 GntR family transcriptional regulator compare
PS417_21630 -1.1 -2.2 magnesium transporter compare
PS417_05790 -1.1 -4.9 hypothetical protein compare
PS417_28050 -1.1 -4.6 hypothetical protein compare
PS417_25380 -1.1 -1.7 hypothetical protein compare
PS417_18040 -1.1 -1.8 general secretion pathway protein GspN compare
PS417_21625 -1.1 -1.3 DNA-binding protein compare
PS417_03100 -1.1 -1.5 pilus assembly protein compare
PS417_10245 -1.0 -1.8 hypothetical protein compare
PS417_27865 -1.0 -2.0 LysR family transcriptional regulator compare
PS417_08540 -1.0 -2.9 RNA helicase compare
PS417_22450 -1.0 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_21285 -1.0 -2.5 hypothetical protein compare
PS417_12840 -1.0 -3.5 TetR family transcriptional regulator compare
PS417_06600 -1.0 -1.0 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_06895 -1.0 -4.1 DNA-binding protein compare
PS417_18425 -1.0 -1.9 sporulation protein compare
PS417_14890 -1.0 -2.6 LysR family transcriptional regulator compare
PS417_19955 -1.0 -2.3 hypothetical protein compare
PS417_04585 -1.0 -2.1 hypothetical protein compare
PS417_11175 -1.0 -2.8 AraC family transcriptional regulator compare
PS417_26470 -1.0 -2.3 cytochrome C compare
PS417_23370 -1.0 -4.0 protoheme IX farnesyltransferase compare
PS417_03260 -1.0 -2.0 5S ribosomal RNA compare
PS417_08185 -0.9 -4.3 glycosyl transferase compare
PS417_01560 -0.9 -2.8 imidazoleglycerol-phosphate dehydratase compare
PS417_07170 -0.9 -2.8 hypothetical protein compare
PS417_24745 -0.9 -2.2 gamma-glutamyl phosphate reductase compare
PS417_02720 -0.9 -1.0 TetR family transcriptional regulator compare
PS417_00085 -0.9 -1.8 16S rRNA methyltransferase compare
PS417_23950 -0.9 -1.9 polynucleotide phosphorylase/polyadenylase compare
PS417_08190 -0.9 -6.9 membrane protein compare
PS417_04390 -0.9 -4.3 toluene tolerance protein compare
PS417_19645 -0.9 -2.1 chemotaxis protein compare
PS417_02950 -0.9 -2.0 tRNA-dihydrouridine synthase B compare
PS417_05985 -0.9 -1.8 chemotaxis protein CheY compare
PS417_12535 -0.9 -1.4 nitrilase compare
PS417_21000 -0.9 -1.7 CrfX protein compare
PS417_05975 -0.9 -0.7 chemotaxis protein CheW compare
PS417_22840 -0.8 -1.9 tRNA-Met compare
PS417_23385 -0.8 -3.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_05535 -0.8 -1.0 Fis family transcriptional regulator compare
PS417_20610 -0.8 -1.0 hypothetical protein compare
PS417_09655 -0.8 -1.7 RNA polymerase sigma factor compare
PS417_02210 -0.8 -3.1 diguanylate cyclase compare
PS417_22700 -0.8 -2.2 RNA polymerase subunit sigma-24 compare
PS417_03380 -0.8 -1.1 hypothetical protein compare
PS417_23390 -0.8 -3.3 ubiquinol oxidase subunit II compare
PS417_06100 -0.8 -1.7 SAM-dependent methyltransferase compare
PS417_05815 -0.8 -3.6 recombinase RecA compare
PS417_01605 -0.8 -1.0 phosphoglycerate mutase compare
PS417_19800 -0.8 -2.0 flagellar motor switch protein FliG compare
PS417_17350 -0.8 -1.8 copper resistance protein CopD compare
PS417_14515 -0.8 -1.4 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_24500 -0.8 -2.8 DEAD/DEAH box helicase compare
PS417_17935 -0.8 -2.5 endoribonuclease L-PSP compare
PS417_17240 -0.8 -2.0 trigger factor compare
PS417_10860 -0.8 -1.6 flagellar basal body rod protein FlgG compare
PS417_22445 -0.8 -2.0 ATP-dependent DNA helicase RuvB compare
PS417_08195 -0.8 -4.7 hypothetical protein compare
PS417_18760 -0.8 -2.8 hypothetical protein compare
PS417_04375 -0.8 -1.8 ABC transporter ATP-binding protein compare
PS417_19095 -0.8 -0.7 hypothetical protein compare
PS417_08410 -0.8 -1.9 hypothetical protein compare
PS417_23995 -0.8 -0.8 preprotein translocase subunit SecG compare
PS417_10015 -0.8 -1.1 hypothetical protein compare
PS417_26985 -0.8 -4.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_05155 -0.8 -2.1 DNA polymerase III subunit chi compare
PS417_15790 -0.8 -2.7 hypothetical protein compare
PS417_07595 -0.8 -2.2 PasA protein compare
PS417_21015 -0.8 -1.1 EstX protein compare
PS417_01915 -0.8 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_09440 -0.7 -1.5 MerR family transcriptional regulator compare
PS417_08155 -0.7 -1.0 integration host factor subunit beta compare
PS417_27195 -0.7 -1.0 N-acetylglutamate synthase compare
PS417_10210 -0.7 -3.2 hypothetical protein compare
PS417_16560 -0.7 -2.0 GNAT family acetyltransferase compare
PS417_14975 -0.7 -1.6 tRNA hydroxylase compare
PS417_27205 -0.7 -2.0 adenylate cyclase compare
PS417_20855 -0.7 -1.2 hypothetical protein compare
PS417_08200 -0.7 -2.1 hypothetical protein compare
PS417_08225 -0.7 -2.5 acetolactate synthase compare
PS417_17580 -0.7 -1.9 citrulline utilization hydrolase (from data) compare
PS417_11615 -0.7 -1.3 urea ABC transporter ATP-binding protein compare
PS417_08205 -0.7 -2.6 acetyltransferase compare
PS417_07615 -0.7 -3.1 TetR family transcriptional regulator compare
PS417_02105 -0.7 -2.7 acyl carrier protein compare
PS417_22050 -0.7 -2.8 ribonuclease BN compare
PS417_11400 -0.7 -1.1 phosphoglycerate mutase compare
PS417_08245 -0.7 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_14315 -0.7 -1.2 2,5-dioxovalerate dehydrogenase compare
PS417_10425 -0.7 -1.3 hypothetical protein compare
PS417_08230 -0.7 -1.7 lipopolysaccharide biosynthesis protein RfbH compare
PS417_01005 -0.7 -2.1 methionine ABC transporter substrate-binding protein compare
PS417_26645 -0.7 -2.1 chemotaxis protein compare
PS417_27425 -0.7 -4.3 exopolyphosphatase compare
PS417_19605 -0.7 -1.1 hypothetical protein compare
PS417_16195 -0.7 -0.8 AraC family transcriptional regulator compare
PS417_08515 -0.7 -1.6 hypothetical protein compare
PS417_26230 -0.7 -2.0 electron transfer flavoprotein subunit alpha compare
PS417_26685 -0.7 -1.3 hypothetical protein compare
PS417_15100 -0.6 -1.7 BatB protein compare
PS417_03000 -0.6 -3.7 translation initiation factor Sui1 compare
PS417_07940 -0.6 -1.8 hypothetical protein compare
PS417_19285 -0.6 -0.8 ankyrin compare
PS417_00030 -0.6 -2.7 hypothetical protein compare
PS417_00390 -0.6 -2.4 ABC transporter substrate-binding protein compare
PS417_20340 -0.6 -1.2 hypothetical protein compare
PS417_23845 -0.6 -1.8 hemin ABC transporter ATP-binding protein compare
PS417_12390 -0.6 -1.2 hypothetical protein compare
PS417_09150 -0.6 -1.3 energy transducer TonB compare
PS417_11195 -0.6 -1.7 NAD(P)H-quinone oxidoreductase compare
PS417_24605 -0.6 -1.9 thiamine-phosphate pyrophosphorylase compare
PS417_20775 -0.6 -3.3 coproporphyrinogen III oxidase compare
PS417_22085 -0.6 -1.1 aldehyde dehydrogenase compare
PS417_23810 -0.6 -4.3 acetolactate synthase 3 catalytic subunit compare
PS417_00405 -0.6 -3.9 DNA polymerase I compare
PS417_09325 -0.6 -2.0 peptidase S41 compare
PS417_11360 -0.6 -2.1 energy transducer TonB compare
PS417_05505 -0.6 -3.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_09140 -0.6 -2.0 biopolymer transporter ExbB compare
PS417_15915 -0.6 -1.0 hypothetical protein compare
PS417_23825 -0.6 -2.7 penicillin-binding protein compare
PS417_10615 -0.6 -2.7 hypothetical protein compare
PS417_22875 -0.6 -1.4 hypothetical protein compare
PS417_22270 -0.6 -1.5 hypothetical protein compare
PS417_07855 -0.6 -2.0 hypothetical protein compare
PS417_07270 -0.6 -1.8 LysR family transcriptional regulator compare
PS417_16845 -0.6 -1.7 monovalent cation/H+ antiporter subunit E compare
PS417_23490 -0.6 -0.8 dihydrofolate reductase compare
PS417_05785 -0.6 -2.0 tail protein compare
PS417_17960 -0.6 -1.9 LysR family transcriptional regulator compare
PS417_10680 -0.6 -1.9 enoyl-CoA hydratase compare
PS417_00370 -0.6 -0.8 hypothetical protein compare
PS417_20160 -0.6 -2.2 cysteine synthase compare
PS417_08250 -0.6 -1.5 competence protein ComEA compare
PS417_05830 -0.6 -2.2 hypothetical protein compare
PS417_00015 -0.6 -3.7 recombinase RecF compare
PS417_06825 -0.6 -1.5 hypothetical protein compare
PS417_07710 -0.6 -3.7 membrane protein compare
PS417_20665 -0.6 -3.4 hypothetical protein compare
PS417_20785 -0.6 -2.7 transcriptional regulator compare
PS417_08620 -0.6 -0.7 hypothetical protein compare
PS417_26060 -0.6 -1.5 DNA polymerase III subunit epsilon compare
PS417_09210 -0.6 -0.7 TetR family transcriptional regulator compare
PS417_23545 -0.6 -2.0 gamma-glutamyl kinase compare
PS417_01095 -0.6 -0.9 amino acid ABC transporter ATP-binding protein compare
PS417_11535 -0.6 -1.3 nicotinate phosphoribosyltransferase compare
PS417_12260 -0.6 -1.8 hypothetical protein compare
PS417_11275 -0.6 -1.4 general secretion pathway protein GspG compare
PS417_00195 -0.6 -1.3 hypothetical protein compare
PS417_02365 -0.6 -1.0 hypothetical protein compare
PS417_19600 -0.6 -0.8 exonuclease compare
PS417_28275 -0.6 -1.5 cobalamin biosynthesis protein CobW compare
PS417_14110 -0.6 -1.5 2-nitropropane dioxygenase compare
PS417_13775 -0.6 -2.3 dehydrogenase compare
PS417_22815 -0.5 -3.1 permease compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms