Experiment set7IT038 for Pseudomonas simiae WCS417

Compare to:

LB 0.5x with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

200 most important genes:

  gene name fitness t score description  
PS417_24155 -4.7 -6.7 ATP-binding protein compare
PS417_20985 -3.1 -4.8 porin compare
PS417_01605 -2.6 -2.8 phosphoglycerate mutase compare
PS417_08125 -2.5 -2.1 prephenate dehydratase compare
PS417_02280 -2.4 -2.9 GlcNAc-PI de-N-acetylase compare
PS417_23770 -2.2 -3.5 exodeoxyribonuclease V subunit alpha compare
PS417_22450 -2.1 -2.8 ATP-dependent DNA helicase RuvA compare
PS417_06375 -2.0 -1.2 deoxycytidine triphosphate deaminase compare
PS417_23380 -1.8 -3.7 cytochrome o ubiquinol oxidase subunit III compare
PS417_27795 -1.8 -1.2 orotate phosphoribosyltransferase compare
PS417_16555 -1.8 -3.0 cupin compare
PS417_09235 -1.8 -1.8 molecular chaperone compare
PS417_08220 -1.7 -1.6 epimerase compare
PS417_10245 -1.6 -2.7 hypothetical protein compare
PS417_19955 -1.6 -3.1 hypothetical protein compare
PS417_23950 -1.6 -2.6 polynucleotide phosphorylase/polyadenylase compare
PS417_04365 -1.6 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_06680 -1.5 -8.8 nuclease PIN compare
PS417_22520 -1.4 -3.1 histidine kinase compare
PS417_22565 -1.4 -1.6 formyltetrahydrofolate deformylase compare
PS417_21480 -1.4 -1.7 23S rRNA pseudouridylate synthase compare
PS417_04585 -1.4 -1.8 hypothetical protein compare
PS417_08155 -1.3 -2.2 integration host factor subunit beta compare
PS417_04380 -1.3 -1.9 ABC transporter permease compare
PS417_27865 -1.3 -2.1 LysR family transcriptional regulator compare
PS417_08135 -1.2 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_03260 -1.2 -2.5 5S ribosomal RNA compare
PS417_27870 -1.2 -2.8 ATP-dependent DNA helicase RecG compare
PS417_26990 -1.2 -1.9 RNA pyrophosphohydrolase compare
PS417_27585 -1.2 -1.9 diaminopimelate epimerase compare
PS417_05695 -1.1 -4.9 transcriptional regulator compare
PS417_03560 -1.1 -2.3 GTP-binding protein compare
PS417_02555 -1.1 -8.9 exoribonuclease R compare
PS417_05535 -1.1 -1.9 Fis family transcriptional regulator compare
PS417_15325 -1.1 -1.3 type VI secretion protein compare
PS417_09210 -1.1 -1.6 TetR family transcriptional regulator compare
PS417_23375 -1.1 -2.2 cytochrome C oxidase compare
PS417_03815 -1.1 -2.5 DNA transporter compare
PS417_18040 -1.0 -1.7 general secretion pathway protein GspN compare
PS417_09010 -1.0 -2.2 phosphohistidine phosphatase compare
PS417_08540 -1.0 -2.8 RNA helicase compare
PS417_08200 -1.0 -3.8 hypothetical protein compare
PS417_02270 -1.0 -3.5 carbamoyltransferase compare
PS417_27195 -1.0 -1.3 N-acetylglutamate synthase compare
PS417_24500 -1.0 -2.4 DEAD/DEAH box helicase compare
PS417_08410 -1.0 -2.3 hypothetical protein compare
PS417_10220 -1.0 -4.3 hypothetical protein compare
PS417_26605 -1.0 -0.8 malonate decarboxylase subunit beta compare
PS417_08225 -1.0 -3.8 acetolactate synthase compare
PS417_19095 -0.9 -1.7 hypothetical protein compare
PS417_22840 -0.9 -1.1 tRNA-Met compare
PS417_11770 -0.9 -1.1 pyruvate dehydrogenase compare
PS417_08190 -0.9 -7.1 membrane protein compare
PS417_07770 -0.9 -1.6 hypothetical protein compare
PS417_17930 -0.9 -1.6 aldehyde dehydrogenase compare
PS417_08185 -0.9 -3.1 glycosyl transferase compare
PS417_16715 -0.9 -1.5 DoxX family protein compare
PS417_10040 -0.9 -0.9 MFS transporter compare
PS417_17805 -0.9 -2.1 microcin B17 processing protein McbC compare
PS417_17945 -0.9 -0.9 hypothetical protein compare
PS417_19755 -0.9 -1.5 flagellar motor switch protein FliM compare
PS417_15135 -0.9 -1.3 hypothetical protein compare
PS417_00535 -0.9 -1.7 Holliday junction resolvase compare
PS417_22060 -0.9 -1.4 hypothetical protein compare
PS417_17240 -0.9 -2.3 trigger factor compare
PS417_22085 -0.9 -1.5 aldehyde dehydrogenase compare
PS417_07170 -0.9 -2.9 hypothetical protein compare
PS417_06100 -0.9 -1.7 SAM-dependent methyltransferase compare
PS417_11175 -0.9 -1.9 AraC family transcriptional regulator compare
PS417_16195 -0.8 -0.9 AraC family transcriptional regulator compare
PS417_00180 -0.8 -2.8 tryptophan synthase subunit alpha compare
PS417_16560 -0.8 -1.6 GNAT family acetyltransferase compare
PS417_22270 -0.8 -1.8 hypothetical protein compare
PS417_21000 -0.8 -1.4 CrfX protein compare
PS417_23385 -0.8 -3.7 cytochrome o ubiquinol oxidase subunit I compare
PS417_03785 -0.8 -2.1 pilus assembly protein PilV compare
PS417_06600 -0.8 -0.9 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_19350 -0.8 -3.1 GTP cyclohydrolase compare
PS417_08205 -0.8 -2.5 acetyltransferase compare
PS417_01435 -0.8 -1.2 hypothetical protein compare
PS417_04875 -0.8 -1.5 molybdenum cofactor biosynthesis protein MoaE compare
PS417_00705 -0.8 -1.4 MarR family transcriptional regulator compare
PS417_01950 -0.8 -3.3 malate dehydrogenase compare
PS417_04305 -0.8 -1.0 aspartate ammonia-lyase compare
PS417_12870 -0.8 -1.5 enoyl-CoA hydratase compare
PS417_19675 -0.8 -2.1 chemotaxis protein CheY compare
PS417_00405 -0.8 -4.6 DNA polymerase I compare
PS417_13885 -0.8 -2.7 chemotaxis protein CheY compare
PS417_08620 -0.8 -0.9 hypothetical protein compare
PS417_08230 -0.8 -1.7 lipopolysaccharide biosynthesis protein RfbH compare
PS417_16055 -0.8 -1.6 biopolymer transporter TolR compare
PS417_14240 -0.8 -1.7 isochorismatase compare
PS417_08195 -0.8 -5.1 hypothetical protein compare
PS417_13730 -0.8 -1.2 hypothetical protein compare
PS417_24745 -0.7 -2.1 gamma-glutamyl phosphate reductase compare
PS417_05445 -0.7 -1.2 DNA mismatch repair protein MutT compare
PS417_17070 -0.7 -1.7 RNA polymerase subunit sigma-24 compare
PS417_10210 -0.7 -2.5 hypothetical protein compare
PS417_10955 -0.7 -1.5 porin compare
PS417_05790 -0.7 -3.0 hypothetical protein compare
PS417_08580 -0.7 -3.4 histidine kinase compare
PS417_17215 -0.7 -2.1 peptidylprolyl isomerase compare
PS417_20635 -0.7 -0.8 ABC transporter ATP-binding protein compare
PS417_02210 -0.7 -2.7 diguanylate cyclase compare
PS417_19720 -0.7 -1.0 DNA-binding protein compare
PS417_19500 -0.7 -3.0 antibiotic synthesis protein MbtH compare
PS417_21270 -0.7 -1.4 translation initiation factor 2 compare
PS417_14045 -0.7 -2.9 alkyl hydroperoxide reductase compare
PS417_02805 -0.7 -1.4 urease subunit gamma compare
PS417_10025 -0.7 -0.8 bacteriophage lambda NinG family protein compare
PS417_23580 -0.7 -1.3 peptidylprolyl isomerase compare
PS417_20875 -0.7 -3.3 chromosome segregation protein SMC compare
PS417_15400 -0.7 -1.1 hypothetical protein compare
PS417_06845 -0.7 -1.3 lipoprotein compare
PS417_10540 -0.7 -2.9 NAD-dependent deacetylase compare
PS417_12035 -0.7 -1.9 dihydroxyacetone kinase compare
PS417_07615 -0.7 -3.5 TetR family transcriptional regulator compare
PS417_20310 -0.7 -1.9 hypothetical protein compare
PS417_15425 -0.7 -2.5 acetyltransferase compare
PS417_01560 -0.7 -1.3 imidazoleglycerol-phosphate dehydratase compare
PS417_02975 -0.7 -1.9 3-dehydroquinate dehydratase compare
PS417_02560 -0.7 -1.2 23S rRNA methyltransferase compare
PS417_13140 -0.7 -0.9 oxidoreductase compare
PS417_23370 -0.7 -3.0 protoheme IX farnesyltransferase compare
PS417_27705 -0.7 -1.2 amino acid dehydrogenase compare
PS417_05815 -0.7 -2.7 recombinase RecA compare
PS417_17935 -0.7 -2.0 endoribonuclease L-PSP compare
PS417_07305 -0.7 -1.6 3-beta hydroxysteroid dehydrogenase compare
PS417_00835 -0.6 -2.8 hypothetical protein compare
PS417_06530 -0.6 -1.9 membrane protein compare
PS417_19275 -0.6 -0.7 hypothetical protein compare
PS417_17350 -0.6 -1.6 copper resistance protein CopD compare
PS417_28275 -0.6 -2.3 cobalamin biosynthesis protein CobW compare
PS417_23775 -0.6 -0.8 exodeoxyribonuclease V subunit beta compare
PS417_00550 -0.6 -0.8 hypothetical protein compare
PS417_26230 -0.6 -1.9 electron transfer flavoprotein subunit alpha compare
PS417_22990 -0.6 -0.8 iron dicitrate transport regulator FecR compare
PS417_07000 -0.6 -1.9 hypothetical protein compare
PS417_02950 -0.6 -2.1 tRNA-dihydrouridine synthase B compare
PS417_17780 -0.6 -0.8 Ais protein compare
PS417_23390 -0.6 -2.7 ubiquinol oxidase subunit II compare
PS417_22175 -0.6 -1.2 amino acid transporter LysE compare
PS417_18020 -0.6 -1.0 hypothetical protein compare
PS417_06685 -0.6 -0.6 beta-ketoadipyl CoA thiolase compare
PS417_23805 -0.6 -2.6 acetolactate synthase 3 regulatory subunit compare
PS417_01400 -0.6 -1.4 hypothetical protein compare
PS417_17840 -0.6 -1.5 betaine-aldehyde dehydrogenase compare
PS417_19285 -0.6 -1.0 ankyrin compare
PS417_20610 -0.6 -0.7 hypothetical protein compare
PS417_18495 -0.6 -0.9 hypothetical protein compare
PS417_02255 -0.6 -1.7 lipopolysaccharide kinase compare
PS417_22050 -0.6 -2.4 ribonuclease BN compare
PS417_14140 -0.6 -1.2 membrane protein compare
PS417_24230 -0.6 -2.8 ATP-dependent protease compare
PS417_21015 -0.6 -1.1 EstX protein compare
PS417_12375 -0.6 -1.0 serine/threonine protein phosphatase compare
PS417_00085 -0.6 -1.4 16S rRNA methyltransferase compare
PS417_11185 -0.6 -1.1 dimethylallyltransferase compare
PS417_25120 -0.6 -1.7 capsular biosynthesis protein compare
PS417_22580 -0.6 -1.7 membrane protein compare
PS417_21630 -0.6 -1.5 magnesium transporter compare
PS417_19605 -0.6 -1.0 hypothetical protein compare
PS417_04650 -0.6 -1.0 D-alanine--D-alanine ligase compare
PS417_17610 -0.6 -1.1 AsnC family transcriptional regulator compare
PS417_27425 -0.6 -3.5 exopolyphosphatase compare
PS417_12855 -0.6 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_22680 -0.6 -1.6 chemotaxis protein CheY compare
PS417_08575 -0.6 -1.3 MarR family transcriptional regulator compare
PS417_05510 -0.5 -2.7 alpha/beta hydrolase compare
PS417_23825 -0.5 -3.0 penicillin-binding protein compare
PS417_19665 -0.5 -1.5 flagellar motor protein MotD compare
PS417_22825 -0.5 -2.7 hypothetical protein compare
PS417_10635 -0.5 -3.0 peptidylprolyl isomerase compare
PS417_16400 -0.5 -1.2 NAD(P)H-quinone oxidoreductase compare
PS417_27800 -0.5 -2.1 exodeoxyribonuclease III compare
PS417_03350 -0.5 -1.9 cytochrome C peroxidase compare
PS417_09865 -0.5 -1.1 hypothetical protein compare
PS417_06895 -0.5 -1.4 DNA-binding protein compare
PS417_05525 -0.5 -2.3 Fis family transcriptional regulator compare
PS417_19505 -0.5 -0.9 2,4-diaminobutyrate 4-aminotransferase compare
PS417_20340 -0.5 -1.2 hypothetical protein compare
PS417_20665 -0.5 -2.9 hypothetical protein compare
PS417_06355 -0.5 -1.6 protein-L-isoaspartate O-methyltransferase compare
PS417_23105 -0.5 -0.8 hypothetical protein compare
PS417_27520 -0.5 -2.6 uroporphyrin-III methyltransferase compare
PS417_12015 -0.5 -1.2 phosphoglycerate mutase compare
PS417_18860 -0.5 -1.4 transcriptional regulator compare
PS417_01285 -0.5 -0.7 haloacid dehalogenase compare
PS417_12160 -0.5 -1.9 Fis family transcriptional regulator compare
PS417_12660 -0.5 -1.1 hypothetical protein compare
PS417_28510 -0.5 -2.0 chromosome partitioning protein compare
PS417_04170 -0.5 -2.3 stringent starvation protein A compare
PS417_01600 -0.5 -1.9 peptidase M23 compare
PS417_17580 -0.5 -1.6 citrulline utilization hydrolase (from data) compare
PS417_22640 -0.5 -1.4 cytochrome C biogenesis protein CcmE compare
PS417_25175 -0.5 -1.3 hypothetical protein compare
PS417_07140 -0.5 -1.5 peptidase M48 compare
PS417_28050 -0.5 -1.8 hypothetical protein compare
PS417_19625 -0.5 -1.3 histidine kinase compare
PS417_15805 -0.5 -0.9 transporter compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms