Experiment set7IT035 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x

200 most important genes:

  gene name fitness t score description  
PS417_27795 -4.0 -1.3 orotate phosphoribosyltransferase compare
PS417_24155 -4.0 -4.7 ATP-binding protein compare
PS417_27195 -3.8 -1.7 N-acetylglutamate synthase compare
PS417_06375 -3.7 -1.3 deoxycytidine triphosphate deaminase compare
PS417_28220 -3.7 -2.4 LysR family transcriptional regulator compare
PS417_23950 -3.6 -5.0 polynucleotide phosphorylase/polyadenylase compare
PS417_05595 -3.4 -11.6 ornithine carbamoyltransferase compare
PS417_20125 -3.1 -5.8 phosphoribosylglycinamide formyltransferase compare
PS417_02000 -2.9 -16.3 glutamate synthase compare
PS417_27040 -2.8 -4.1 3-phosphoglycerate dehydrogenase compare
PS417_24745 -2.7 -4.2 gamma-glutamyl phosphate reductase compare
PS417_07170 -2.7 -3.9 hypothetical protein compare
PS417_20985 -2.7 -4.5 porin compare
PS417_23770 -2.6 -3.5 exodeoxyribonuclease V subunit alpha compare
PS417_00185 -2.6 -4.2 tryptophan synthase subunit beta compare
PS417_01575 -2.6 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02415 -2.6 -6.0 phosphoserine phosphatase compare
PS417_02005 -2.6 -9.0 glutamate synthase compare
PS417_27435 -2.5 -8.1 polyphosphate kinase compare
PS417_01560 -2.5 -3.1 imidazoleglycerol-phosphate dehydratase compare
PS417_01605 -2.4 -1.6 phosphoglycerate mutase compare
PS417_22690 -2.3 -3.8 phosphogluconate dehydratase compare
PS417_04415 -2.2 -6.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_02510 -2.2 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_08125 -2.2 -1.9 prephenate dehydratase compare
PS417_19645 -2.2 -3.9 chemotaxis protein compare
PS417_12855 -2.0 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_06680 -1.9 -9.7 nuclease PIN compare
PS417_01850 -1.9 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_26695 -1.8 -1.4 uracil phosphoribosyltransferase compare
PS417_01565 -1.8 -5.0 imidazole glycerol phosphate synthase compare
PS417_03560 -1.8 -2.3 GTP-binding protein compare
PS417_04420 -1.8 -8.5 histidinol dehydrogenase compare
PS417_01570 -1.7 -3.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_07165 -1.7 -4.6 dihydrodipicolinate synthase compare
PS417_20160 -1.7 -3.7 cysteine synthase compare
PS417_22620 -1.7 -4.6 pyruvate kinase compare
PS417_02555 -1.6 -11.1 exoribonuclease R compare
PS417_23995 -1.6 -1.1 preprotein translocase subunit SecG compare
PS417_25715 -1.6 -5.1 anthranilate phosphoribosyltransferase compare
PS417_06645 -1.6 -7.2 RNA polymerase-associated protein RapA compare
PS417_16195 -1.5 -1.4 AraC family transcriptional regulator compare
PS417_01855 -1.5 -3.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_16555 -1.5 -2.6 cupin compare
PS417_18585 -1.5 -4.7 3-isopropylmalate dehydrogenase compare
PS417_23810 -1.5 -9.1 acetolactate synthase 3 catalytic subunit compare
PS417_03260 -1.5 -2.3 5S ribosomal RNA compare
PS417_00180 -1.4 -3.5 tryptophan synthase subunit alpha compare
PS417_02210 -1.4 -4.6 diguanylate cyclase compare
PS417_09235 -1.4 -1.4 molecular chaperone compare
PS417_18560 -1.4 -6.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_26990 -1.4 -1.8 RNA pyrophosphohydrolase compare
PS417_05785 -1.4 -2.9 tail protein compare
PS417_23800 -1.4 -7.2 ketol-acid reductoisomerase compare
PS417_04305 -1.4 -1.6 aspartate ammonia-lyase compare
PS417_01580 -1.3 -1.4 imidazole glycerol phosphate synthase compare
PS417_26730 -1.3 -1.0 pyrroline-5-carboxylate reductase compare
PS417_26470 -1.3 -2.4 cytochrome C compare
PS417_23805 -1.3 -3.8 acetolactate synthase 3 regulatory subunit compare
PS417_05975 -1.3 -0.8 chemotaxis protein CheW compare
PS417_18070 -1.3 -1.3 general secretion pathway protein GspH compare
PS417_19675 -1.3 -2.6 chemotaxis protein CheY compare
PS417_27835 -1.2 -3.7 endoribonuclease compare
PS417_23545 -1.2 -1.5 gamma-glutamyl kinase compare
PS417_26890 -1.2 -4.1 dihydroxy-acid dehydratase compare
PS417_06895 -1.2 -3.8 DNA-binding protein compare
PS417_18600 -1.2 -2.0 isopropylmalate isomerase compare
PS417_08580 -1.1 -4.4 histidine kinase compare
PS417_22695 -1.1 -6.4 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_08135 -1.1 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_19505 -1.1 -1.2 2,4-diaminobutyrate 4-aminotransferase compare
PS417_24525 -1.1 -2.1 nuclease compare
PS417_05445 -1.1 -1.4 DNA mismatch repair protein MutT compare
PS417_28230 -1.1 -2.2 transcriptional regulator compare
PS417_18425 -1.0 -1.9 sporulation protein compare
PS417_19800 -1.0 -1.7 flagellar motor switch protein FliG compare
PS417_08510 -1.0 -2.2 LysR family transcriptional regulator compare
PS417_03045 -1.0 -1.4 hypothetical protein compare
PS417_27865 -1.0 -2.5 LysR family transcriptional regulator compare
PS417_06500 -1.0 -1.2 hypothetical protein compare
PS417_22050 -1.0 -4.1 ribonuclease BN compare
PS417_08155 -1.0 -1.6 integration host factor subunit beta compare
PS417_22175 -1.0 -1.6 amino acid transporter LysE compare
PS417_25710 -1.0 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_23900 -1.0 -6.0 poly(A) polymerase compare
PS417_11180 -1.0 -2.1 TetR family transcriptional regulator compare
PS417_19650 -1.0 -3.7 chemotaxis protein CheW compare
PS417_15215 -1.0 -1.1 protein activator of alkane oxidation PraA compare
PS417_05120 -1.0 -1.5 RNA polymerase subunit sigma-24 compare
PS417_05695 -1.0 -4.0 transcriptional regulator compare
PS417_13510 -1.0 -1.1 polyketide cyclase compare
PS417_21480 -0.9 -1.0 23S rRNA pseudouridylate synthase compare
PS417_23110 -0.9 -5.1 2-isopropylmalate synthase compare
PS417_22060 -0.9 -1.2 hypothetical protein compare
PS417_19755 -0.9 -1.4 flagellar motor switch protein FliM compare
PS417_12840 -0.9 -2.6 TetR family transcriptional regulator compare
PS417_00030 -0.9 -2.7 hypothetical protein compare
PS417_20855 -0.9 -1.2 hypothetical protein compare
PS417_08620 -0.9 -0.9 hypothetical protein compare
PS417_25175 -0.9 -2.7 hypothetical protein compare
PS417_20140 -0.9 -1.4 nucleoprotein/polynucleotide-associated enzyme compare
PS417_07470 -0.9 -1.4 hypothetical protein compare
PS417_08205 -0.9 -3.2 acetyltransferase compare
PS417_11175 -0.9 -1.7 AraC family transcriptional regulator compare
PS417_06145 -0.9 -1.0 hypothetical protein compare
PS417_12540 -0.9 -1.7 hypothetical protein compare
PS417_10320 -0.9 -1.4 hypothetical protein compare
PS417_11440 -0.9 -1.3 hypothetical protein compare
PS417_15325 -0.9 -1.1 type VI secretion protein compare
PS417_23150 -0.9 -2.3 Cro/Cl family transcriptional regulator compare
PS417_26740 -0.9 -3.8 homoserine acetyltransferase compare
PS417_08435 -0.9 -1.1 pilus assembly protein PilZ compare
PS417_08320 -0.9 -1.5 metal-chelation protein CHAD compare
PS417_20635 -0.8 -0.9 ABC transporter ATP-binding protein compare
PS417_16560 -0.8 -1.6 GNAT family acetyltransferase compare
PS417_18590 -0.8 -2.6 SAM-dependent methyltransferase compare
PS417_02815 -0.8 -1.8 urea ABC transporter ATP-binding protein compare
PS417_10425 -0.8 -1.5 hypothetical protein compare
PS417_03515 -0.8 -1.5 type III secretion protein compare
PS417_21705 -0.8 -2.9 arginine N-succinyltransferase compare
PS417_19805 -0.8 -1.6 flagellar M-ring protein FliF compare
PS417_21070 -0.8 -1.4 aconitate hydratase compare
PS417_08990 -0.8 -2.6 ABC transporter substrate-binding protein compare
PS417_19625 -0.8 -2.5 histidine kinase compare
PS417_27005 -0.8 -0.8 membrane protein compare
PS417_18860 -0.8 -3.0 transcriptional regulator compare
PS417_06885 -0.8 -3.3 dihydrodipicolinate synthase compare
PS417_18530 -0.8 -2.6 O-succinylhomoserine sulfhydrylase compare
PS417_10245 -0.8 -1.1 hypothetical protein compare
PS417_18630 -0.8 -2.2 tRNA-dihydrouridine synthase C compare
PS417_13885 -0.8 -2.5 chemotaxis protein CheY compare
PS417_12555 -0.8 -4.3 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_12635 -0.8 -2.4 alkanesulfonate monooxygenase compare
PS417_14710 -0.8 -1.2 isochorismatase compare
PS417_22520 -0.8 -1.6 histidine kinase compare
PS417_12375 -0.8 -1.2 serine/threonine protein phosphatase compare
PS417_02560 -0.8 -1.5 23S rRNA methyltransferase compare
PS417_14940 -0.8 -1.3 LysR family transcriptional regulator compare
PS417_09010 -0.8 -2.0 phosphohistidine phosphatase compare
PS417_25275 -0.8 -2.7 hypothetical protein compare
PS417_22085 -0.8 -0.9 aldehyde dehydrogenase compare
PS417_11810 -0.8 -1.8 oxidoreductase compare
PS417_05790 -0.8 -3.0 hypothetical protein compare
PS417_22935 -0.7 -2.4 hypothetical protein compare
PS417_02630 -0.7 -1.4 NAD synthetase compare
PS417_04180 -0.7 -1.3 GntR family transcriptional regulator compare
PS417_27205 -0.7 -2.6 adenylate cyclase compare
PS417_16915 -0.7 -3.8 hemolysin D compare
PS417_23215 -0.7 -3.0 RNA methyltransferase compare
PS417_26370 -0.7 -2.5 RNA helicase compare
PS417_12565 -0.7 -2.0 2-dehydro-3-deoxygluconokinase compare
PS417_06200 -0.7 -2.9 protein-PII uridylyltransferase compare
PS417_28050 -0.7 -3.6 hypothetical protein compare
PS417_27585 -0.7 -2.1 diaminopimelate epimerase compare
PS417_23775 -0.7 -0.9 exodeoxyribonuclease V subunit beta compare
PS417_11475 -0.7 -1.5 membrane protein compare
PS417_18595 -0.7 -1.5 3-isopropylmalate dehydratase compare
PS417_07710 -0.7 -3.7 membrane protein compare
PS417_26995 -0.7 -3.4 phosphoserine phosphatase compare
PS417_26645 -0.7 -2.2 chemotaxis protein compare
PS417_07985 -0.7 -1.1 AbrB family transcriptional regulator compare
PS417_14975 -0.7 -1.7 tRNA hydroxylase compare
PS417_15135 -0.7 -1.1 hypothetical protein compare
PS417_06770 -0.7 -3.2 multidrug transporter compare
PS417_18540 -0.7 -1.9 colicin V production CvpA compare
PS417_06280 -0.7 -2.2 ribonuclease HII compare
PS417_06845 -0.7 -1.2 lipoprotein compare
PS417_27800 -0.7 -3.2 exodeoxyribonuclease III compare
PS417_19935 -0.7 -2.1 hypothetical protein compare
PS417_06530 -0.7 -1.5 membrane protein compare
PS417_09210 -0.7 -1.1 TetR family transcriptional regulator compare
PS417_24790 -0.7 -1.9 hypothetical protein compare
PS417_08625 -0.7 -1.5 membrane protein compare
PS417_19660 -0.7 -2.4 cobalamin biosynthesis protein CobQ compare
PS417_09865 -0.7 -1.1 hypothetical protein compare
PS417_14015 -0.7 -2.3 LysR family transcriptional regulator compare
PS417_13645 -0.7 -1.6 ABC transporter compare
PS417_15930 -0.7 -1.9 thioredoxin reductase compare
PS417_24500 -0.7 -2.0 DEAD/DEAH box helicase compare
PS417_22580 -0.7 -1.8 membrane protein compare
PS417_19665 -0.6 -2.8 flagellar motor protein MotD compare
PS417_13625 -0.6 -1.8 cytochrome B561 compare
PS417_00535 -0.6 -1.9 Holliday junction resolvase compare
PS417_22720 -0.6 -2.1 membrane protein compare
PS417_18495 -0.6 -1.0 hypothetical protein compare
PS417_18395 -0.6 -1.6 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_07615 -0.6 -2.7 TetR family transcriptional regulator compare
PS417_22570 -0.6 -0.6 H-NS histone compare
PS417_21700 -0.6 -1.8 arginine N-succinyltransferase compare
PS417_16710 -0.6 -1.7 hydrolase compare
PS417_11535 -0.6 -1.2 nicotinate phosphoribosyltransferase compare
PS417_15095 -0.6 -2.0 hypothetical protein compare
PS417_21845 -0.6 -0.9 membrane protein compare
PS417_07120 -0.6 -2.1 RNA polymerase sigma-H factor compare
PS417_14435 -0.6 -2.2 transcriptional regulator compare
PS417_11585 -0.6 -1.4 LuxR family transcriptional regulator compare
PS417_17455 -0.6 -1.9 cytochrome C compare
PS417_27870 -0.6 -2.1 ATP-dependent DNA helicase RecG compare
PS417_17240 -0.6 -2.3 trigger factor compare
PS417_11830 -0.6 -1.1 membrane protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms