Experiment set7IT035 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x

200 most detrimental genes:

  gene name fitness t score description  
PS417_19825 +1.7 11.1 ATPase AAA compare
PS417_07560 +1.3 3.2 universal stress protein UspA compare
PS417_16255 +1.2 2.0 RNA polymerase sigma factor compare
PS417_11945 +1.2 3.2 hypothetical protein compare
PS417_10720 +1.1 4.8 chemotaxis protein CheY compare
PS417_26805 +1.1 1.1 cell division protein FtsE compare
PS417_02160 +1.1 1.5 hypothetical protein compare
PS417_00845 +1.1 1.6 transcriptional regulator compare
PS417_21655 +1.1 1.3 aspartate kinase compare
PS417_16815 +1.0 1.8 acyl-CoA dehydrogenase compare
PS417_05560 +1.0 2.2 ABC transporter compare
PS417_22210 +1.0 1.9 AraC family transcriptional regulator compare
PS417_19885 +1.0 2.9 flagellar basal body rod protein FlgG compare
PS417_09160 +1.0 3.2 GNAT family acetyltransferase compare
PS417_17305 +0.9 1.5 hypothetical protein compare
PS417_10405 +0.9 1.1 filamentous hemagglutinin compare
PS417_02165 +0.9 2.9 ZapA compare
PS417_26240 +0.9 2.1 N-methylproline demethylase compare
PS417_04050 +0.9 1.3 peptide ABC transporter ATP-binding protein compare
PS417_11415 +0.9 1.5 hypothetical protein compare
PS417_27815 +0.9 1.0 hypothetical protein compare
PS417_13545 +0.9 2.7 arginine aminotransferase compare
PS417_19785 +0.9 3.7 flagellar biogenesis protein compare
PS417_21035 +0.9 5.9 multidrug transporter compare
PS417_16320 +0.9 2.0 protein tyrosine phosphatase compare
PS417_05710 +0.9 2.3 hypothetical protein compare
PS417_27875 +0.9 3.9 histidine kinase compare
PS417_17440 +0.9 2.0 beta-lactamase compare
PS417_11875 +0.9 2.3 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare
PS417_19880 +0.9 4.9 flagellar basal body L-ring protein compare
PS417_23855 +0.8 2.0 ABC transporter substrate-binding protein compare
PS417_19745 +0.8 3.1 flagellar assembly protein FliO compare
PS417_10010 +0.8 2.3 Replication protein P compare
PS417_19725 +0.8 3.4 flagellar biosynthesis protein FlhB compare
PS417_19765 +0.8 5.4 flagellar hook-length control protein compare
PS417_03385 +0.8 1.1 flavin reductase compare
PS417_09605 +0.8 1.4 glycosyl transferase compare
PS417_19830 +0.8 2.2 flagellar assembly protein FliT compare
PS417_17675 +0.8 1.4 ABC transporter compare
PS417_07565 +0.8 2.0 hypothetical protein compare
PS417_00220 +0.8 1.1 hypothetical protein compare
PS417_00155 +0.8 4.1 2-dehydro-3-deoxygalactonokinase compare
PS417_18250 +0.8 1.7 chemotaxis protein compare
PS417_11950 +0.8 1.5 hypothetical protein compare
PS417_07840 +0.8 2.0 hypothetical protein compare
PS417_01750 +0.8 1.6 histidine ammonia-lyase compare
PS417_09915 +0.8 1.2 hypothetical protein compare
PS417_07255 +0.8 3.7 Deoxyribonolactonase (from data) compare
PS417_06370 +0.8 1.2 cold-shock protein compare
PS417_17320 +0.8 3.1 phenylhydantoinase compare
PS417_14200 +0.8 1.4 hypothetical protein compare
PS417_24460 +0.8 1.5 hypothetical protein compare
PS417_24675 +0.8 1.1 lipoyl synthase compare
PS417_12245 +0.7 2.1 GNAT family acetyltransferase compare
PS417_06395 +0.7 1.5 amino acid transporter compare
PS417_14075 +0.7 1.3 hypothetical protein compare
PS417_26220 +0.7 1.9 Rieske (2Fe-2S) protein compare
PS417_21425 +0.7 1.6 4-amino-4-deoxychorismate lyase compare
PS417_23170 +0.7 1.7 FeS assembly protein IscX compare
PS417_21565 +0.7 1.9 flagellar basal body rod protein FlgC compare
PS417_16370 +0.7 3.7 chemotaxis protein CheY compare
PS417_24895 +0.7 1.1 hypothetical protein compare
PS417_02740 +0.7 1.4 LysR family transcriptional regulator compare
PS417_02485 +0.7 2.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_16790 +0.7 1.6 ABC transporter permease compare
PS417_01375 +0.7 1.8 hypothetical protein compare
PS417_24370 +0.7 0.6 (2Fe-2S)-binding protein compare
PS417_02385 +0.7 1.2 esterase compare
PS417_04945 +0.7 2.7 fimbrial chaperone protein compare
PS417_15400 +0.7 1.1 hypothetical protein compare
PS417_16860 +0.7 1.7 diadenosine tetraphosphate hydrolase compare
PS417_18990 +0.7 1.9 membrane protein compare
PS417_04775 +0.7 2.7 short-chain dehydrogenase compare
PS417_10445 +0.7 2.0 LysR family transcriptional regulator compare
PS417_03470 +0.7 2.7 ATP synthase compare
PS417_28450 +0.6 1.8 XRE family transcriptional regulator compare
PS417_03940 +0.6 2.0 membrane protein compare
PS417_22870 +0.6 1.7 lipoprotein compare
PS417_17000 +0.6 0.9 MerR family transcriptional regulator compare
PS417_15510 +0.6 1.3 hypothetical protein compare
PS417_07455 +0.6 1.2 glutamine amidotransferase compare
PS417_01135 +0.6 1.9 taurine dioxygenase compare
PS417_15935 +0.6 1.2 Rrf2 family transcriptional regulator compare
PS417_02770 +0.6 1.5 membrane protein compare
PS417_13620 +0.6 1.3 thermostable hemolysin compare
PS417_03430 +0.6 2.2 methyltransferase type 11 compare
PS417_01900 +0.6 2.5 poly(3-hydroxyalkanoate) depolymerase compare
PS417_17035 +0.6 0.9 Cro/Cl family transcriptional regulator compare
PS417_07950 +0.6 1.4 MFS transporter compare
PS417_19630 +0.6 1.6 LuxR family transcriptional regulator compare
PS417_07895 +0.6 1.9 hypothetical protein compare
PS417_21760 +0.6 1.1 hypothetical protein compare
PS417_10655 +0.6 1.9 LuxR family transcriptional regulator compare
PS417_08415 +0.6 3.3 hypothetical protein compare
PS417_06030 +0.6 2.2 hypothetical protein compare
PS417_27135 +0.6 0.6 glutamine synthetase compare
PS417_08465 +0.6 2.3 elongation factor GreAB compare
PS417_27475 +0.6 1.1 membrane protein compare
PS417_10575 +0.6 1.0 DNA alkylation repair protein compare
PS417_19740 +0.6 3.3 flagellar biosynthesis protein flip compare
PS417_11445 +0.6 2.8 enoyl-CoA hydratase compare
PS417_05140 +0.6 1.3 dipicolinate synthase compare
PS417_06505 +0.6 2.0 membrane protein compare
PS417_02880 +0.6 1.4 copper chaperone compare
PS417_15770 +0.6 0.9 pyridoxine 5'-phosphate oxidase compare
PS417_08025 +0.6 0.8 acetylornithine aminotransferase compare
PS417_10275 +0.6 1.6 histidine kinase compare
PS417_16965 +0.6 2.4 hypothetical protein compare
PS417_19710 +0.6 3.4 flagellar biosynthesis protein FlhA compare
PS417_16295 +0.6 2.2 hypothetical protein compare
PS417_13175 +0.6 0.9 iron transporter compare
PS417_09470 +0.6 0.6 hypothetical protein compare
PS417_22960 +0.6 2.1 hypothetical protein compare
PS417_18020 +0.6 1.0 hypothetical protein compare
PS417_16045 +0.6 1.1 acyl-CoA dehydrogenase compare
PS417_23455 +0.6 1.8 LrgA compare
PS417_19870 +0.6 1.5 flagellar rod assembly protein FlgJ compare
PS417_26850 +0.6 0.5 twin-arginine translocation pathway signal protein compare
PS417_01145 +0.5 0.7 taurine transporter ATP-binding subunit compare
PS417_02370 +0.5 0.9 ADP-ribose pyrophosphatase compare
PS417_13250 +0.5 2.0 ABC transporter compare
PS417_13395 +0.5 3.2 phosphoglucomutase compare
PS417_26655 +0.5 3.2 chemotaxis protein compare
PS417_27070 +0.5 2.6 alpha/beta hydrolase compare
PS417_18090 +0.5 1.6 iron ABC transporter compare
PS417_05055 +0.5 1.6 hypothetical protein compare
PS417_01115 +0.5 1.1 serine acetyltransferase compare
PS417_26420 +0.5 0.7 hypothetical protein compare
PS417_12935 +0.5 1.3 RNA polymerase sigma factor compare
PS417_00510 +0.5 0.6 membrane protein compare
PS417_15540 +0.5 0.7 NUDIX hydrolase compare
PS417_14285 +0.5 1.7 hypothetical protein compare
PS417_01030 +0.5 1.0 glutamine ABC transporter substrate-binding protein compare
PS417_25290 +0.5 1.4 hypothetical protein compare
PS417_11805 +0.5 1.6 D-threo-aldose 1-dehydrogenase compare
PS417_06245 +0.5 1.3 zinc metallopeptidase RseP compare
PS417_01395 +0.5 3.8 biofilm formation protein PelB compare
PS417_15780 +0.5 1.3 membrane protein compare
PS417_19550 +0.5 1.9 thioesterase compare
PS417_19795 +0.5 2.3 flagellar assembly protein FliH compare
PS417_05165 +0.5 1.3 cytosol aminopeptidase compare
PS417_15390 +0.5 1.0 hypothetical protein compare
PS417_20950 +0.5 1.4 hypothetical protein compare
PS417_08940 +0.5 1.8 thioesterase compare
PS417_28345 +0.5 2.8 cardiolipin synthetase compare
PS417_06365 +0.5 3.4 RNA polymerase sigma factor compare
PS417_13780 +0.5 1.9 integrase compare
PS417_08420 +0.5 1.5 lipoprotein compare
PS417_07890 +0.5 1.7 hypothetical protein compare
PS417_09590 +0.5 1.4 membrane protein compare
PS417_10440 +0.5 2.3 MFS transporter compare
PS417_17755 +0.5 1.3 hypothetical protein compare
PS417_12975 +0.5 1.9 GCN5 family acetyltransferase compare
PS417_03790 +0.5 1.4 pilus assembly protein PilW compare
PS417_06075 +0.5 1.0 hypothetical protein compare
PS417_14535 +0.5 1.3 alpha/beta hydrolase compare
PS417_23160 +0.5 1.1 50S rRNA methyltransferase compare
PS417_27215 +0.5 1.3 hypothetical protein compare
PS417_21570 +0.5 2.2 flagellar basal body rod protein FlgB compare
PS417_27155 +0.5 0.6 aliphatic sulfonates transport ATP-binding subunit compare
PS417_15775 +0.5 2.1 short-chain dehydrogenase compare
PS417_14825 +0.5 1.6 hypothetical protein compare
PS417_11900 +0.5 3.8 conjugal transfer protein TraR compare
PS417_19620 +0.5 0.6 hypothetical protein compare
PS417_01390 +0.5 3.5 PbsX family transcriptional regulator compare
PS417_21585 +0.5 2.6 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_21850 +0.5 0.8 LysR family transcriptional regulator compare
PS417_14325 +0.5 1.9 AraC family transcriptional regulator compare
PS417_26305 +0.5 1.3 AraC family transcriptional regulator compare
PS417_23105 +0.5 0.7 hypothetical protein compare
PS417_09770 +0.5 1.9 MFS transporter compare
PS417_10910 +0.5 1.6 FAD-dependent oxidoreductase compare
PS417_24860 +0.5 2.4 hypothetical protein compare
PS417_15760 +0.5 2.2 molybdenum cofactor biosynthesis protein MoaA compare
PS417_28270 +0.5 1.6 hypothetical protein compare
PS417_15920 +0.5 1.5 TetR family transcriptional regulator compare
PS417_24560 +0.5 1.3 ferrous iron transporter compare
PS417_18205 +0.5 0.6 aldehyde dehydrogenase compare
PS417_18235 +0.5 1.4 nitrile hydratase compare
PS417_15640 +0.5 1.6 DNA methylase compare
PS417_12175 +0.5 1.4 peptide ABC transporter permease compare
PS417_22345 +0.5 1.2 acetyl-CoA carboxylase compare
PS417_14595 +0.5 1.5 pyrroline-5-carboxylate reductase compare
PS417_26755 +0.5 0.6 nucleoside-triphosphate diphosphatase compare
PS417_10400 +0.5 1.3 membrane protein compare
PS417_17800 +0.5 2.3 microcin B17-processing protein McbD compare
PS417_02955 +0.5 1.2 hypothetical protein compare
PS417_23710 +0.5 1.5 Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data) compare
PS417_11245 +0.5 2.6 RNA polymerase subunit sigma-24 compare
PS417_27595 +0.5 1.1 recombinase XerC compare
PS417_28525 +0.5 1.8 RNA polymerase sigma factor compare
PS417_17650 +0.5 1.0 proteinase compare
PS417_01630 +0.5 0.5 hypothetical protein compare
PS417_18355 +0.5 1.8 DNA-binding protein compare
PS417_19480 +0.5 2.3 aminopeptidase compare
PS417_24800 +0.5 2.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_06730 +0.5 0.5 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_21475 +0.5 1.5 HAD family hydrolase compare
PS417_02705 +0.5 0.8 urease accessory protein UreF compare
PS417_04915 +0.5 0.8 glutamine ABC transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms