Experiment set7IT034 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x

200 most important genes:

  gene name fitness t score description  
PS417_24155 -5.4 -6.3 ATP-binding protein compare
PS417_01605 -4.7 -3.1 phosphoglycerate mutase compare
PS417_20985 -4.6 -5.6 porin compare
PS417_00180 -4.6 -4.4 tryptophan synthase subunit alpha compare
PS417_24745 -4.6 -6.8 gamma-glutamyl phosphate reductase compare
PS417_18600 -4.5 -3.1 isopropylmalate isomerase compare
PS417_27795 -4.0 -1.4 orotate phosphoribosyltransferase compare
PS417_05595 -3.4 -9.9 ornithine carbamoyltransferase compare
PS417_27040 -3.3 -3.9 3-phosphoglycerate dehydrogenase compare
PS417_00185 -3.2 -5.4 tryptophan synthase subunit beta compare
PS417_01575 -3.2 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02415 -3.2 -8.4 phosphoserine phosphatase compare
PS417_01565 -3.1 -8.3 imidazole glycerol phosphate synthase compare
PS417_08125 -2.8 -1.9 prephenate dehydratase compare
PS417_27195 -2.7 -2.3 N-acetylglutamate synthase compare
PS417_23545 -2.7 -1.9 gamma-glutamyl kinase compare
PS417_26730 -2.6 -1.2 pyrroline-5-carboxylate reductase compare
PS417_01850 -2.5 -6.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01855 -2.4 -2.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_23770 -2.4 -2.9 exodeoxyribonuclease V subunit alpha compare
PS417_23810 -2.4 -12.0 acetolactate synthase 3 catalytic subunit compare
PS417_23800 -2.4 -9.9 ketol-acid reductoisomerase compare
PS417_04420 -2.3 -8.5 histidinol dehydrogenase compare
PS417_04380 -2.3 -2.5 ABC transporter permease compare
PS417_12855 -2.3 -5.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27435 -2.2 -5.5 polyphosphate kinase compare
PS417_02000 -2.2 -11.0 glutamate synthase compare
PS417_20125 -2.1 -4.6 phosphoribosylglycinamide formyltransferase compare
PS417_08155 -2.1 -2.1 integration host factor subunit beta compare
PS417_04415 -2.1 -7.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23805 -2.1 -4.5 acetolactate synthase 3 regulatory subunit compare
PS417_22690 -2.1 -4.0 phosphogluconate dehydratase compare
PS417_26995 -2.0 -5.5 phosphoserine phosphatase compare
PS417_02005 -2.0 -8.1 glutamate synthase compare
PS417_16195 -1.9 -1.4 AraC family transcriptional regulator compare
PS417_18560 -1.9 -5.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_18530 -1.9 -5.1 O-succinylhomoserine sulfhydrylase compare
PS417_23950 -1.9 -3.2 polynucleotide phosphorylase/polyadenylase compare
PS417_04500 -1.8 -1.9 hypothetical protein compare
PS417_16715 -1.8 -2.3 DoxX family protein compare
PS417_19605 -1.8 -1.8 hypothetical protein compare
PS417_23995 -1.8 -1.1 preprotein translocase subunit SecG compare
PS417_02210 -1.7 -5.0 diguanylate cyclase compare
PS417_04375 -1.7 -3.7 ABC transporter ATP-binding protein compare
PS417_22520 -1.7 -2.9 histidine kinase compare
PS417_18595 -1.7 -3.8 3-isopropylmalate dehydratase compare
PS417_22620 -1.7 -3.3 pyruvate kinase compare
PS417_20025 -1.7 -2.0 alpha-ribazole phosphatase compare
PS417_28220 -1.6 -2.5 LysR family transcriptional regulator compare
PS417_06375 -1.6 -0.9 deoxycytidine triphosphate deaminase compare
PS417_26740 -1.6 -7.2 homoserine acetyltransferase compare
PS417_01560 -1.6 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_14280 -1.6 -3.7 hypothetical protein compare
PS417_19675 -1.5 -4.6 chemotaxis protein CheY compare
PS417_25715 -1.5 -3.0 anthranilate phosphoribosyltransferase compare
PS417_02510 -1.5 -4.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18585 -1.4 -4.3 3-isopropylmalate dehydrogenase compare
PS417_19800 -1.4 -2.5 flagellar motor switch protein FliG compare
PS417_19755 -1.4 -1.7 flagellar motor switch protein FliM compare
PS417_06680 -1.4 -8.6 nuclease PIN compare
PS417_25725 -1.4 -7.8 anthranilate synthase component I compare
PS417_26890 -1.3 -4.0 dihydroxy-acid dehydratase compare
PS417_06540 -1.3 -1.6 membrane protein compare
PS417_26745 -1.3 -3.1 methionine biosynthesis protein MetW compare
PS417_27585 -1.3 -1.9 diaminopimelate epimerase compare
PS417_08730 -1.3 -1.7 cytochrome C compare
PS417_01620 -1.3 -2.5 preprotein translocase subunit SecB compare
PS417_10025 -1.3 -1.7 bacteriophage lambda NinG family protein compare
PS417_23110 -1.3 -4.9 2-isopropylmalate synthase compare
PS417_17795 -1.3 -1.4 ABC transporter permease compare
PS417_06025 -1.2 -2.9 alpha/beta hydrolase compare
PS417_02280 -1.2 -1.6 GlcNAc-PI de-N-acetylase compare
PS417_26695 -1.2 -1.2 uracil phosphoribosyltransferase compare
PS417_27815 -1.2 -1.3 hypothetical protein compare
PS417_19955 -1.2 -1.4 hypothetical protein compare
PS417_06645 -1.2 -5.6 RNA polymerase-associated protein RapA compare
PS417_14075 -1.2 -1.5 hypothetical protein compare
PS417_17610 -1.2 -2.1 AsnC family transcriptional regulator compare
PS417_02555 -1.2 -7.9 exoribonuclease R compare
PS417_21630 -1.2 -2.0 magnesium transporter compare
PS417_03260 -1.1 -1.8 5S ribosomal RNA compare
PS417_04385 -1.1 -4.3 organic solvent ABC transporter substrate-binding protein compare
PS417_19805 -1.1 -1.6 flagellar M-ring protein FliF compare
PS417_14810 -1.1 -2.2 Fosmidomycin resistance protein compare
PS417_08540 -1.1 -2.6 RNA helicase compare
PS417_04875 -1.1 -1.4 molybdenum cofactor biosynthesis protein MoaE compare
PS417_07170 -1.1 -2.1 hypothetical protein compare
PS417_22210 -1.1 -1.2 AraC family transcriptional regulator compare
PS417_03815 -1.1 -2.0 DNA transporter compare
PS417_18040 -1.1 -1.5 general secretion pathway protein GspN compare
PS417_07710 -1.1 -4.9 membrane protein compare
PS417_19500 -1.1 -3.0 antibiotic synthesis protein MbtH compare
PS417_27315 -1.1 -1.2 hypothetical protein compare
PS417_07540 -1.0 -1.8 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_08230 -1.0 -2.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_00535 -1.0 -2.8 Holliday junction resolvase compare
PS417_10015 -1.0 -1.2 hypothetical protein compare
PS417_20635 -1.0 -1.0 ABC transporter ATP-binding protein compare
PS417_20610 -1.0 -1.0 hypothetical protein compare
PS417_15035 -1.0 -1.1 alkylhydroperoxidase compare
PS417_26280 -1.0 -2.0 NADPH:quinone reductase compare
PS417_04390 -1.0 -3.9 toluene tolerance protein compare
PS417_06145 -1.0 -1.1 hypothetical protein compare
PS417_14155 -1.0 -4.9 branched-chain amino acid ABC transporter permease compare
PS417_26815 -1.0 -2.1 peptidase M16 compare
PS417_25720 -1.0 -2.6 anthranilate synthase component II compare
PS417_27800 -1.0 -3.5 exodeoxyribonuclease III compare
PS417_07165 -1.0 -2.3 dihydrodipicolinate synthase compare
PS417_02385 -1.0 -1.2 esterase compare
PS417_17070 -1.0 -1.6 RNA polymerase subunit sigma-24 compare
PS417_19275 -1.0 -1.0 hypothetical protein compare
PS417_19665 -0.9 -2.0 flagellar motor protein MotD compare
PS417_11000 -0.9 -3.1 L-arabonate dehydratase (EC 4.2.1.25) (from data) compare
PS417_05790 -0.9 -2.5 hypothetical protein compare
PS417_03560 -0.9 -1.5 GTP-binding protein compare
PS417_22875 -0.9 -1.6 hypothetical protein compare
PS417_19200 -0.9 -2.6 fumarate hydratase compare
PS417_15215 -0.9 -1.1 protein activator of alkane oxidation PraA compare
PS417_01285 -0.9 -1.5 haloacid dehalogenase compare
PS417_14985 -0.9 -1.9 Fe-S protein compare
PS417_18780 -0.9 -1.3 flavin reductase compare
PS417_21085 -0.9 -2.0 GntR family transcriptional regulator compare
PS417_19285 -0.9 -1.4 ankyrin compare
PS417_13175 -0.9 -0.8 iron transporter compare
PS417_22700 -0.9 -2.4 RNA polymerase subunit sigma-24 compare
PS417_23670 -0.9 -3.2 Muconate cycloisomerase (EC 5.5.1.1) (from data) compare
PS417_26520 -0.9 -3.7 amino acid ABC transporter substrate-binding protein compare
PS417_18425 -0.9 -1.5 sporulation protein compare
PS417_18540 -0.9 -2.2 colicin V production CvpA compare
PS417_01570 -0.9 -0.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_06845 -0.9 -1.3 lipoprotein compare
PS417_18455 -0.9 -1.6 hypothetical protein compare
PS417_19350 -0.9 -2.5 GTP cyclohydrolase compare
PS417_05105 -0.8 -2.8 membrane protein compare
PS417_00810 -0.8 -2.9 RNA polymerase sigma factor compare
PS417_12055 -0.8 -2.7 xylitol ABC transporter, substrate-binding component (from data) compare
PS417_21625 -0.8 -1.0 DNA-binding protein compare
PS417_08245 -0.8 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_13870 -0.8 -1.7 hypothetical protein compare
PS417_11175 -0.8 -1.5 AraC family transcriptional regulator compare
PS417_11405 -0.8 -3.0 precorrin 6A synthase compare
PS417_27940 -0.8 -1.5 type VI secretion protein compare
PS417_22115 -0.8 -2.1 transcriptional regulator compare
PS417_14235 -0.8 -1.6 hypothetical protein compare
PS417_06835 -0.8 -1.8 phospholipase compare
PS417_18930 -0.8 -1.2 restriction endonuclease subunit S compare
PS417_20875 -0.8 -2.7 chromosome segregation protein SMC compare
PS417_21070 -0.8 -2.0 aconitate hydratase compare
PS417_11810 -0.8 -1.8 oxidoreductase compare
PS417_22570 -0.8 -0.7 H-NS histone compare
PS417_23915 -0.8 -2.5 pantoate--beta-alanine ligase compare
PS417_15890 -0.8 -1.4 RNA polymerase sigma factor compare
PS417_10870 -0.8 -1.5 GABA permease compare
PS417_15090 -0.8 -1.8 hypothetical protein compare
PS417_03100 -0.8 -0.9 pilus assembly protein compare
PS417_15325 -0.8 -0.9 type VI secretion protein compare
PS417_01965 -0.8 -1.3 fimbriae biosynthesis protein compare
PS417_00385 -0.8 -0.9 Fur family transcriptional regulator compare
PS417_06865 -0.8 -1.8 transporter compare
PS417_06165 -0.8 -1.9 thiamine biosynthesis protein ThiF compare
PS417_23910 -0.8 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_19655 -0.8 -1.8 chemotaxis protein CheW compare
PS417_02820 -0.8 -1.3 urea ABC transporter ATP-binding protein compare
PS417_05695 -0.8 -2.4 transcriptional regulator compare
PS417_13255 -0.8 -1.3 ABC transporter compare
PS417_21000 -0.8 -1.1 CrfX protein compare
PS417_05975 -0.8 -0.5 chemotaxis protein CheW compare
PS417_27705 -0.8 -1.2 amino acid dehydrogenase compare
PS417_18640 -0.8 -1.0 hydrolase compare
PS417_23615 -0.8 -1.5 sulfate transporter compare
PS417_01435 -0.8 -1.0 hypothetical protein compare
PS417_20310 -0.8 -1.3 hypothetical protein compare
PS417_07015 -0.7 -1.7 helicase compare
PS417_19505 -0.7 -0.6 2,4-diaminobutyrate 4-aminotransferase compare
PS417_03350 -0.7 -2.1 cytochrome C peroxidase compare
PS417_15695 -0.7 -3.2 molybdenum cofactor biosynthesis protein A compare
PS417_06200 -0.7 -3.7 protein-PII uridylyltransferase compare
PS417_12015 -0.7 -1.4 phosphoglycerate mutase compare
PS417_26470 -0.7 -1.6 cytochrome C compare
PS417_10220 -0.7 -2.5 hypothetical protein compare
PS417_19935 -0.7 -2.0 hypothetical protein compare
PS417_02950 -0.7 -1.6 tRNA-dihydrouridine synthase B compare
PS417_08335 -0.7 -1.0 hypothetical protein compare
PS417_07615 -0.7 -3.3 TetR family transcriptional regulator compare
PS417_22025 -0.7 -1.6 LysR family transcriptional regulator compare
PS417_20505 -0.7 -2.9 hypothetical protein compare
PS417_06355 -0.7 -2.3 protein-L-isoaspartate O-methyltransferase compare
PS417_04305 -0.7 -1.1 aspartate ammonia-lyase compare
PS417_21210 -0.7 -1.6 amidotransferase compare
PS417_20235 -0.7 -3.0 hypothetical protein compare
PS417_26230 -0.7 -1.4 electron transfer flavoprotein subunit alpha compare
PS417_15790 -0.7 -2.5 hypothetical protein compare
PS417_26990 -0.7 -1.1 RNA pyrophosphohydrolase compare
PS417_26645 -0.7 -1.3 chemotaxis protein compare
PS417_07000 -0.7 -1.5 hypothetical protein compare
PS417_00650 -0.7 -0.6 LysR family transcriptional regulator compare
PS417_26190 -0.7 -3.3 sarcosine oxidase subunit beta compare
PS417_26985 -0.7 -2.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_02105 -0.7 -1.1 acyl carrier protein compare
PS417_10840 -0.7 -1.3 amidase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms