Experiment set7IT034 for Pseudomonas syringae pv. syringae B728a ΔmexB

Compare to:

KB with Lupeol 10 mM

200 most detrimental genes:

  gene name fitness t score description  
Psyr_4634 +1.4 2.8 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_1357 +1.3 1.9 RNase HII compare
Psyr_3618 +1.3 1.7 Catalytic LigB subunit of aromatic ring-opening dioxygenase compare
Psyr_3103 +1.2 2.4 phosphate ABC transporter ATP-binding protein, PhoT family compare
Psyr_3692 +1.2 3.3 conserved hypothetical protein compare
Psyr_3657 +1.2 3.0 DSBA oxidoreductase compare
Psyr_3635 +1.1 1.7 Competence protein ComEA helix-hairpin-helix region compare
Psyr_1638 +1.1 2.5 RNAse E compare
Psyr_1834 +1.1 2.3 conserved hypothetical protein compare
Psyr_3934 +1.1 2.1 Short-chain dehydrogenase/reductase SDR compare
Psyr_1972 +1.0 1.5 conserved hypothetical protein compare
Psyr_2962 +1.0 2.3 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_3844 +1.0 1.5 conserved hypothetical protein compare
Psyr_1629 +1.0 1.9 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_3703 +1.0 2.3 Flavodoxin/nitric oxide synthase compare
Psyr_0432 +1.0 2.7 conserved hypothetical protein compare
Psyr_2398 +1.0 1.3 ABC transporter compare
Psyr_4011 +1.0 1.1 Thiolase compare
Psyr_4604 +1.0 1.4 hypothetical protein compare
Psyr_3030 +1.0 2.3 short chain enoyl-CoA hydratase compare
Psyr_1451 +0.9 1.6 hypothetical protein compare
Psyr_1306 +0.9 2.5 CheW-like protein compare
Psyr_3785 +0.9 2.4 DSBA oxidoreductase compare
Psyr_4897 +0.9 2.0 imidazoleglycerol-phosphate dehydratase compare
Psyr_1308 +0.9 1.2 Protein-glutamate methylesterase compare
Psyr_1848 +0.9 3.2 conserved hypothetical protein compare
Psyr_4055 +0.9 1.6 conserved domain protein compare
Psyr_0051 +0.9 2.6 conserved hypothetical protein compare
Psyr_3040 +0.9 2.1 conserved hypothetical protein compare
Psyr_2619 +0.9 1.7 diaminobutyrate aminotransferase apoenzyme compare
Psyr_2624 +0.9 1.2 lipoprotein, putative compare
Psyr_2401 +0.9 1.4 extracellular solute-binding protein, family 1 compare
Psyr_2951 +0.9 3.4 transcriptional regulator, LysR family compare
Psyr_3447 +0.9 3.5 Flagellar motor switch protein FliM compare
Psyr_2022 +0.8 1.9 Glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
Psyr_2901 +0.8 1.6 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_3926 +0.8 2.5 transcriptional regulator, PadR family compare
Psyr_0041 +0.8 1.3 Protein of unknown function DUF1161 compare
Psyr_3664 +0.8 0.9 DTW compare
Psyr_0426 +0.8 1.5 lipoprotein, putative compare
Psyr_2710 +0.8 1.1 transcriptional regulator, GntR family compare
Psyr_1633 +0.8 1.2 MotA/TolQ/ExbB proton channel compare
Psyr_3257 +0.8 2.1 multisubunit potassium/proton antiporter, PhaG subunit compare
Psyr_2057 +0.8 1.3 acyl-CoA thioesterase II, putative compare
Psyr_1876 +0.8 1.6 conserved hypothetical protein compare
Psyr_2765 +0.8 1.3 conserved domain protein compare
Psyr_2852 +0.8 1.5 conserved hypothetical protein compare
Psyr_1829 +0.8 1.8 conserved hypothetical protein compare
Psyr_1765 +0.8 1.7 GCN5-related N-acetyltransferase compare
Psyr_2506 +0.8 1.3 amino acid ABC transporter ATP-binding protein, PAAT family compare
Psyr_3974 +0.8 1.6 ABC transporter compare
Psyr_3315 +0.8 1.9 conserved hypothetical protein compare
Psyr_3061 +0.8 2.0 putative glutathione S-transferase compare
Psyr_2155 +0.7 1.7 Carbohydrate kinase, PfkB compare
Psyr_1779 +0.7 2.3 hypothetical protein compare
Psyr_3511 +0.7 1.4 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_4647 +0.7 3.2 hypothetical protein compare
Psyr_0828 +0.7 1.9 ketopantoate hydroxymethyltransferase compare
Psyr_3480 +0.7 3.0 Flagellar basal-body rod protein FlgC compare
Psyr_0053 +0.7 1.3 conserved hypothetical protein compare
Psyr_1097 +0.7 1.8 glycine cleavage system H protein compare
Psyr_2392 +0.7 1.6 conserved hypothetical protein compare
Psyr_3000 +0.7 1.3 methyltransferase, putative compare
Psyr_3133 +0.7 1.8 Amidohydrolase 2 compare
Psyr_4355 +0.7 0.7 hypothetical protein compare
Psyr_3397 +0.7 2.2 transcriptional regulator, LysR family compare
Psyr_3399 +0.7 1.1 Endoribonuclease L-PSP compare
Psyr_4469 +0.7 2.4 conserved hypothetical protein compare
Psyr_3051 +0.7 1.6 transcriptional regulator, LysR family compare
Psyr_4593 +0.7 1.3 sigma factor domain protein compare
Psyr_0765 +0.7 2.7 conserved hypothetical protein compare
Psyr_2851 +0.7 1.7 conserved hypothetical protein compare
Psyr_2441 +0.7 2.3 transcriptional regulator, AraC family compare
Psyr_1138 +0.7 1.6 GCN5-related N-acetyltransferase compare
Psyr_1980 +0.6 1.6 Heat shock protein Hsp20 compare
Psyr_2420 +0.6 1.3 conserved hypothetical protein compare
Psyr_3442 +0.6 2.1 Flagellar biosynthesis protein FliR compare
Psyr_1839 +0.6 1.8 Benzoate membrane transport protein compare
Psyr_0145 +0.6 2.6 conserved hypothetical protein compare
Psyr_4716 +0.6 3.0 Sarcosine oxidase, gamma subunit, heterotetrameric compare
Psyr_1997 +0.6 1.6 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_1676 +0.6 2.0 1-aminocyclopropane-1-carboxylate deaminase, putative compare
Psyr_2938 +0.6 2.2 transcriptional regulator, LysR family compare
Psyr_1037 +0.6 2.0 ribosomal subunit interface protein, putative compare
Psyr_2733 +0.6 2.1 Short-chain dehydrogenase/reductase SDR compare
Psyr_3156 +0.6 1.2 transcriptional regulator, LysR family compare
Psyr_1004 +0.6 1.9 nucleoside ABC transporter membrane protein compare
Psyr_1796 +0.6 1.4 GCN5-related N-acetyltransferase compare
Psyr_0896 +0.6 1.3 Aldose 1-epimerase compare
Psyr_0171 +0.6 1.9 EAL compare
Psyr_2300 +0.6 1.4 Conserved hypothetical protein 374 compare
Psyr_3018 +0.6 1.2 membrane protein, putative compare
Psyr_2621 +0.6 1.7 Secretion protein HlyD compare
Psyr_0616 +0.6 1.3 conserved domain protein compare
Psyr_0629 +0.6 2.5 Aldehyde dehydrogenase (NAD+) compare
Psyr_1984 +0.6 2.3 3-isopropylmalate dehydratase, small subunit compare
Psyr_2467 +0.6 1.9 3-methylcrotonoyl-CoA carboxylase, alpha subunit compare
Psyr_4157 +0.6 2.6 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase compare
Psyr_3031 +0.6 1.8 Thiolase compare
Psyr_4630 +0.6 2.6 thiosulfate sulfurtransferase compare
Psyr_2905 +0.6 2.6 ABC transporter compare
Psyr_3056 +0.6 2.1 Amidase, hydantoinase/carbamoylase compare
Psyr_4744 +0.6 0.6 hypothetical protein compare
Psyr_1717 +0.6 0.9 TPR repeat:von Willebrand factor, type A compare
Psyr_0082 +0.6 2.5 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0256 +0.6 2.9 Phenylacetic acid degradation-related protein compare
Psyr_2480 +0.6 1.8 transcriptional regulator, LysR family compare
Psyr_2137 +0.6 2.4 molybdopterin molybdochelatase compare
Psyr_1943 +0.6 1.9 Sigma-70 region 2 compare
Psyr_1172 +0.6 1.7 transcriptional regulator, AsnC family compare
Psyr_2194 +0.6 2.4 Acriflavin resistance protein compare
Psyr_3852 +0.6 1.0 lipoprotein SlyB, putative compare
Psyr_2753 +0.6 2.1 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_0081 +0.6 1.2 ABC transporter compare
Psyr_0560 +0.6 2.8 conserved hypothetical protein compare
Psyr_1187 +0.6 1.1 type III chaperone protein ShcE compare
Psyr_0900 +0.6 2.7 TRAP dicarboxylate transporter- DctP subunit compare
Psyr_3268 +0.6 2.6 myo-inositol 2-dehydrogenase compare
Psyr_1882 +0.6 1.2 auxin-binding protein, putative compare
Psyr_2463 +0.6 2.3 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_1800 +0.6 1.9 transcriptional regulator, LysR family compare
Psyr_2062 +0.6 1.1 DoxD-like family protein compare
Psyr_2589 +0.5 1.7 IucA/IucC compare
Psyr_3481 +0.5 1.8 Flagellar basal-body rod protein FlgB compare
Psyr_1847 +0.5 1.0 Smr protein/MutS2 C-terminal compare
Psyr_0792 +0.5 1.8 conserved hypothetical protein compare
Psyr_2479 +0.5 3.4 Protein of unknown function DUF490 compare
Psyr_2717 +0.5 2.4 Antibiotic biosynthesis monooxygenase compare
Psyr_1942 +0.5 2.4 conserved hypothetical protein compare
Psyr_1335 +0.5 2.3 Aminotransferase, class V compare
Psyr_3057 +0.5 1.4 transcriptional regulator, DeoR family compare
Psyr_4124 +0.5 1.8 conserved hypothetical protein compare
Psyr_3228 +0.5 1.9 Glycosyl transferase, group 1 compare
Psyr_2468 +0.5 1.8 Enoyl-CoA hydratase/isomerase compare
Psyr_5002 +0.5 2.4 conserved hypothetical protein compare
Psyr_4051 +0.5 0.8 transcriptional regulator, ArsR family compare
Psyr_1736 +0.5 1.9 Helix-turn-helix, Fis-type compare
Psyr_1585 +0.5 2.5 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal compare
Psyr_2528 +0.5 1.4 Polysaccharide deacetylase compare
Psyr_2956 +0.5 1.4 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_4003 +0.5 0.9 conserved hypothetical protein compare
Psyr_1725 +0.5 1.6 Protein of unknown function DUF204 compare
Psyr_4050 +0.5 1.6 Protein of unknown function DUF479 compare
Psyr_0288 +0.5 2.2 Carbonate dehydratase compare
Psyr_1386 +0.5 1.7 transcriptional regulator, LysR family compare
Psyr_3356 +0.5 0.4 conserved hypothetical protein compare
Psyr_2544 +0.5 1.3 Alkylhydroperoxidase AhpD core:Uncharacterized peroxidase-related protein compare
Psyr_3084 +0.5 0.7 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_0352 +0.5 2.2 monooxygenase, DszA family compare
Psyr_1111 +0.5 1.1 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1333 +0.5 2.1 UBA/THIF-type NAD/FAD binding fold protein compare
Psyr_1054 +0.5 1.6 alginate biosynthesis protein AlgJ compare
Psyr_3585 +0.5 1.4 Sua5/YciO/YrdC/YwlC compare
Psyr_4077 +0.5 1.6 Methylated-DNA-[protein]-cysteine S-methyltransferase compare
Psyr_3271 +0.5 2.0 methylmalonate-semialdehyde dehydrogenase (acylating) compare
Psyr_4168 +0.5 2.4 K+-dependent Na+/Ca+ exchanger related-protein compare
Psyr_3474 +0.5 3.0 Flagellar L-ring protein compare
Psyr_3592 +0.5 0.7 Nitroreductase compare
Psyr_1273 +0.5 1.4 NUDIX hydrolase compare
Psyr_3272 +0.5 1.8 5-deoxyglucuronate isomerase compare
Psyr_0212 +0.5 0.8 Conserved hypothetical protein 255 compare
Psyr_2196 +0.5 1.2 Urease accessory protein UreG compare
Psyr_2662 +0.5 1.7 hypothetical protein compare
Psyr_3727 +0.5 1.1 conserved hypothetical protein compare
Psyr_3267 +0.5 2.4 AP endonuclease, family 2 compare
Psyr_1790 +0.5 2.6 Aldo/keto reductase compare
Psyr_4797 +0.5 1.0 Protein of unknown function DUF1090 compare
Psyr_1040 +0.5 1.3 RNA polymerase sigma factor, ECF subfamily compare
Psyr_3818 +0.5 1.1 conserved hypothetical protein compare
Psyr_2531 +0.5 1.6 transcriptional regulator, LysR family compare
Psyr_0553 +0.5 3.0 conserved hypothetical protein compare
Psyr_2994 +0.5 1.2 Glycoside hydrolase, family 77 compare
Psyr_0485 +0.5 1.7 Protein of unknown function DUF179 compare
Psyr_1212 +0.5 1.7 type III secretion protein HrpO compare
Psyr_0639 +0.5 1.7 lipoprotein, putative compare
Psyr_1806 +0.5 2.3 Ureidoglycolate hydrolase compare
Psyr_3896 +0.5 0.9 BFD-like [2Fe-2S]-binding region compare
Psyr_1380 +0.5 2.2 Conserved hypothetical protein 730 compare
Psyr_3782 +0.5 1.4 CsbD-like protein compare
Psyr_4665 +0.5 2.1 membrane protein, putative compare
Psyr_2278 +0.5 1.5 luciferase compare
Psyr_1472 +0.5 1.8 hypothetical protein compare
Psyr_1299 +0.5 1.6 NADH:flavin oxidoreductase/NADH oxidase compare
Psyr_2049 +0.5 0.8 K+ transporting ATPase, KdpC subunit compare
Psyr_2048 +0.5 1.1 Haloacid dehalogenase-like hydrolase:E1-E2 ATPase-associated region compare
Psyr_1207 +0.5 1.0 type III secretion protein HrcS compare
Psyr_1668 +0.5 0.9 amidophosphoribosyltransferase compare
Psyr_3354 +0.5 1.7 Ankyrin compare
Psyr_3975 +0.5 1.4 conserved hypothetical protein compare
Psyr_3241 +0.5 0.7 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein compare
Psyr_2636 +0.5 1.3 TspO/MBR-related protein compare
Psyr_4600 +0.5 2.9 Glycoside hydrolase, family 5 compare
Psyr_3531 +0.5 2.1 Permease for cytosine/purines, uracil, thiamine, allantoin compare
Psyr_1772 +0.4 2.3 Secretion protein HlyD compare
Psyr_2584 +0.4 1.8 IucA/IucC compare
Psyr_0443 +0.4 1.4 Triphosphoribosyl-dephospho-CoA synthase compare
Psyr_0958 +0.4 2.9 amine oxidase, flavin-containing compare
Psyr_4586 +0.4 0.9 tail protein, putative compare
Psyr_5055 +0.4 1.5 YeeE/YedE compare
Psyr_1235 +0.4 1.0 serine O-acetyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a ΔmexB in stress experiments

For stress Lupeol across organisms