Experiment set7IT032 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x

200 most important genes:

  gene name fitness t score description  
PS417_24155 -5.6 -6.7 ATP-binding protein compare
PS417_23545 -5.1 -6.0 gamma-glutamyl kinase compare
PS417_24745 -4.0 -6.7 gamma-glutamyl phosphate reductase compare
PS417_27195 -3.9 -2.0 N-acetylglutamate synthase compare
PS417_05595 -3.8 -9.0 ornithine carbamoyltransferase compare
PS417_20985 -3.6 -4.9 porin compare
PS417_02415 -3.2 -5.9 phosphoserine phosphatase compare
PS417_02005 -3.1 -13.9 glutamate synthase compare
PS417_08125 -3.1 -2.3 prephenate dehydratase compare
PS417_27040 -3.0 -3.6 3-phosphoglycerate dehydrogenase compare
PS417_28220 -2.8 -4.3 LysR family transcriptional regulator compare
PS417_02000 -2.8 -13.3 glutamate synthase compare
PS417_01605 -2.6 -2.4 phosphoglycerate mutase compare
PS417_06375 -2.6 -1.3 deoxycytidine triphosphate deaminase compare
PS417_01855 -2.5 -3.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_01575 -2.4 -8.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_22690 -2.3 -4.5 phosphogluconate dehydratase compare
PS417_27795 -2.3 -1.4 orotate phosphoribosyltransferase compare
PS417_04415 -2.3 -11.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_02510 -2.2 -5.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_20160 -2.2 -4.2 cysteine synthase compare
PS417_20125 -2.1 -5.6 phosphoribosylglycinamide formyltransferase compare
PS417_26730 -2.1 -1.5 pyrroline-5-carboxylate reductase compare
PS417_23810 -2.1 -12.6 acetolactate synthase 3 catalytic subunit compare
PS417_27435 -2.0 -8.0 polyphosphate kinase compare
PS417_07170 -2.0 -3.2 hypothetical protein compare
PS417_23805 -1.9 -5.5 acetolactate synthase 3 regulatory subunit compare
PS417_00180 -1.9 -3.8 tryptophan synthase subunit alpha compare
PS417_01570 -1.9 -2.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_04420 -1.9 -9.3 histidinol dehydrogenase compare
PS417_23800 -1.8 -11.3 ketol-acid reductoisomerase compare
PS417_23770 -1.8 -3.4 exodeoxyribonuclease V subunit alpha compare
PS417_27800 -1.8 -7.3 exodeoxyribonuclease III compare
PS417_01850 -1.7 -8.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_27835 -1.7 -5.6 endoribonuclease compare
PS417_00755 -1.7 -1.2 biofilm PGA synthesis protein PgaD compare
PS417_07165 -1.7 -3.9 dihydrodipicolinate synthase compare
PS417_00185 -1.7 -5.3 tryptophan synthase subunit beta compare
PS417_26890 -1.6 -5.4 dihydroxy-acid dehydratase compare
PS417_09235 -1.6 -1.7 molecular chaperone compare
PS417_01565 -1.5 -5.7 imidazole glycerol phosphate synthase compare
PS417_23950 -1.5 -3.9 polynucleotide phosphorylase/polyadenylase compare
PS417_21630 -1.5 -3.4 magnesium transporter compare
PS417_01580 -1.5 -2.2 imidazole glycerol phosphate synthase compare
PS417_18560 -1.5 -6.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_27870 -1.5 -4.5 ATP-dependent DNA helicase RecG compare
PS417_23995 -1.5 -1.2 preprotein translocase subunit SecG compare
PS417_27585 -1.4 -3.2 diaminopimelate epimerase compare
PS417_25710 -1.4 -1.7 indole-3-glycerol-phosphate synthase compare
PS417_01560 -1.4 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_12855 -1.3 -4.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18690 -1.3 -3.0 aromatic amino acid aminotransferase compare
PS417_16560 -1.3 -3.2 GNAT family acetyltransferase compare
PS417_18600 -1.3 -2.6 isopropylmalate isomerase compare
PS417_02555 -1.3 -9.8 exoribonuclease R compare
PS417_10220 -1.3 -3.9 hypothetical protein compare
PS417_26995 -1.3 -5.4 phosphoserine phosphatase compare
PS417_06680 -1.3 -8.3 nuclease PIN compare
PS417_25715 -1.3 -5.5 anthranilate phosphoribosyltransferase compare
PS417_26695 -1.2 -1.4 uracil phosphoribosyltransferase compare
PS417_13010 -1.2 -2.6 alpha/beta hydrolase compare
PS417_13885 -1.2 -3.7 chemotaxis protein CheY compare
PS417_15930 -1.2 -4.5 thioredoxin reductase compare
PS417_23380 -1.2 -2.9 cytochrome o ubiquinol oxidase subunit III compare
PS417_06540 -1.2 -1.7 membrane protein compare
PS417_12870 -1.2 -2.1 enoyl-CoA hydratase compare
PS417_22450 -1.1 -1.8 ATP-dependent DNA helicase RuvA compare
PS417_06200 -1.1 -4.2 protein-PII uridylyltransferase compare
PS417_03260 -1.1 -2.2 5S ribosomal RNA compare
PS417_22520 -1.1 -2.5 histidine kinase compare
PS417_04380 -1.1 -1.8 ABC transporter permease compare
PS417_08245 -1.1 -1.6 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_08230 -1.1 -2.4 lipopolysaccharide biosynthesis protein RfbH compare
PS417_17610 -1.1 -1.7 AsnC family transcriptional regulator compare
PS417_18585 -1.1 -3.6 3-isopropylmalate dehydrogenase compare
PS417_05445 -1.1 -1.6 DNA mismatch repair protein MutT compare
PS417_28070 -1.1 -4.5 phosphate ABC transporter ATP-binding protein compare
PS417_26745 -1.1 -4.1 methionine biosynthesis protein MetW compare
PS417_03560 -1.1 -2.9 GTP-binding protein compare
PS417_06775 -1.1 -4.7 antibiotic transporter compare
PS417_26740 -1.1 -4.9 homoserine acetyltransferase compare
PS417_08410 -1.0 -3.1 hypothetical protein compare
PS417_22620 -1.0 -2.7 pyruvate kinase compare
PS417_18530 -1.0 -5.1 O-succinylhomoserine sulfhydrylase compare
PS417_21000 -1.0 -2.3 CrfX protein compare
PS417_08155 -1.0 -1.4 integration host factor subunit beta compare
PS417_25725 -1.0 -6.4 anthranilate synthase component I compare
PS417_10015 -1.0 -1.3 hypothetical protein compare
PS417_08135 -1.0 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_11770 -0.9 -1.3 pyruvate dehydrogenase compare
PS417_18595 -0.9 -3.0 3-isopropylmalate dehydratase compare
PS417_06145 -0.9 -1.2 hypothetical protein compare
PS417_17240 -0.9 -3.3 trigger factor compare
PS417_26985 -0.9 -4.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_00195 -0.9 -1.9 hypothetical protein compare
PS417_05695 -0.9 -4.2 transcriptional regulator compare
PS417_03815 -0.9 -2.1 DNA transporter compare
PS417_26990 -0.9 -1.6 RNA pyrophosphohydrolase compare
PS417_08190 -0.9 -7.0 membrane protein compare
PS417_08580 -0.9 -4.0 histidine kinase compare
PS417_20855 -0.9 -1.3 hypothetical protein compare
PS417_04375 -0.9 -2.0 ABC transporter ATP-binding protein compare
PS417_02210 -0.9 -3.0 diguanylate cyclase compare
PS417_09420 -0.9 -1.3 LysR family transcriptional regulator compare
PS417_19275 -0.8 -1.2 hypothetical protein compare
PS417_06645 -0.8 -4.6 RNA polymerase-associated protein RapA compare
PS417_23375 -0.8 -1.5 cytochrome C oxidase compare
PS417_08185 -0.8 -3.8 glycosyl transferase compare
PS417_15805 -0.8 -1.5 transporter compare
PS417_12015 -0.8 -2.6 phosphoglycerate mutase compare
PS417_02440 -0.8 -2.7 flagellar motor protein MotB compare
PS417_08195 -0.8 -4.9 hypothetical protein compare
PS417_04385 -0.8 -3.4 organic solvent ABC transporter substrate-binding protein compare
PS417_22210 -0.8 -1.0 AraC family transcriptional regulator compare
PS417_16825 -0.8 -2.8 membrane protein compare
PS417_23205 -0.8 -3.3 transcriptional regulator compare
PS417_21090 -0.8 -1.5 hypothetical protein compare
PS417_22695 -0.8 -5.2 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_23110 -0.8 -4.5 2-isopropylmalate synthase compare
PS417_00650 -0.8 -0.7 LysR family transcriptional regulator compare
PS417_07710 -0.8 -3.5 membrane protein compare
PS417_19955 -0.8 -1.5 hypothetical protein compare
PS417_21285 -0.8 -2.2 hypothetical protein compare
PS417_08730 -0.8 -1.9 cytochrome C compare
PS417_14280 -0.8 -2.1 hypothetical protein compare
PS417_19645 -0.8 -1.7 chemotaxis protein compare
PS417_04390 -0.8 -3.7 toluene tolerance protein compare
PS417_06165 -0.8 -2.9 thiamine biosynthesis protein ThiF compare
PS417_05160 -0.8 -1.0 DNA polymerase III subunit chi compare
PS417_22935 -0.7 -2.6 hypothetical protein compare
PS417_28080 -0.7 -4.8 phosphate ABC transporter permease compare
PS417_21625 -0.7 -1.0 DNA-binding protein compare
PS417_18420 -0.7 -2.2 deoxyribonuclease compare
PS417_16555 -0.7 -1.2 cupin compare
PS417_18860 -0.7 -2.8 transcriptional regulator compare
PS417_18040 -0.7 -1.4 general secretion pathway protein GspN compare
PS417_08205 -0.7 -3.4 acetyltransferase compare
PS417_00065 -0.7 -1.0 3-methyladenine DNA glycosylase compare
PS417_06530 -0.7 -2.5 membrane protein compare
PS417_10985 -0.7 -0.8 NADH:flavin oxidoreductase compare
PS417_25380 -0.7 -1.8 hypothetical protein compare
PS417_24525 -0.7 -1.3 nuclease compare
PS417_08540 -0.7 -2.2 RNA helicase compare
PS417_11830 -0.7 -1.3 membrane protein compare
PS417_08740 -0.7 -1.8 ribose-phosphate pyrophosphokinase compare
PS417_19285 -0.7 -1.2 ankyrin compare
PS417_02805 -0.7 -1.4 urease subunit gamma compare
PS417_22580 -0.7 -2.4 membrane protein compare
PS417_02105 -0.7 -1.6 acyl carrier protein compare
PS417_15100 -0.7 -1.9 BatB protein compare
PS417_05120 -0.7 -1.5 RNA polymerase subunit sigma-24 compare
PS417_14400 -0.7 -1.8 hypothetical protein compare
PS417_05790 -0.7 -2.6 hypothetical protein compare
PS417_20665 -0.7 -3.7 hypothetical protein compare
PS417_14985 -0.7 -1.4 Fe-S protein compare
PS417_11175 -0.7 -1.0 AraC family transcriptional regulator compare
PS417_09460 -0.7 -1.3 alkanesulfonate monooxygenase compare
PS417_08590 -0.7 -1.5 hypothetical protein compare
PS417_02365 -0.7 -1.8 hypothetical protein compare
PS417_14515 -0.7 -1.2 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_16775 -0.7 -1.5 branched-chain amino acid ABC transporter ATP-binding protein compare
PS417_03080 -0.7 -1.1 hypothetical protein compare
PS417_14315 -0.7 -1.8 2,5-dioxovalerate dehydrogenase compare
PS417_00085 -0.7 -2.3 16S rRNA methyltransferase compare
PS417_19800 -0.7 -1.4 flagellar motor switch protein FliG compare
PS417_13870 -0.7 -1.6 hypothetical protein compare
PS417_24085 -0.7 -2.1 protein RnfH compare
PS417_10870 -0.7 -1.8 GABA permease compare
PS417_14805 -0.6 -1.4 AraC family transcriptional regulator compare
PS417_12845 -0.6 -2.1 NAD(P)H dehydrogenase compare
PS417_07120 -0.6 -2.8 RNA polymerase sigma-H factor compare
PS417_23775 -0.6 -0.8 exodeoxyribonuclease V subunit beta compare
PS417_03100 -0.6 -1.0 pilus assembly protein compare
PS417_09695 -0.6 -1.4 hydrolase compare
PS417_04270 -0.6 -3.9 ribonuclease G compare
PS417_27290 -0.6 -0.7 hypothetical protein compare
PS417_17450 -0.6 -2.1 amino acid ABC transporter substrate-binding protein compare
PS417_04445 -0.6 -2.1 cupin compare
PS417_10040 -0.6 -0.7 MFS transporter compare
PS417_25720 -0.6 -2.9 anthranilate synthase component II compare
PS417_22875 -0.6 -1.5 hypothetical protein compare
PS417_26190 -0.6 -2.2 sarcosine oxidase subunit beta compare
PS417_16100 -0.6 -1.6 antibiotic biosynthesis monooxygenase compare
PS417_17215 -0.6 -1.6 peptidylprolyl isomerase compare
PS417_00345 -0.6 -1.6 copper-binding protein compare
PS417_19500 -0.6 -2.3 antibiotic synthesis protein MbtH compare
PS417_20635 -0.6 -0.8 ABC transporter ATP-binding protein compare
PS417_06865 -0.6 -1.7 transporter compare
PS417_12555 -0.6 -3.5 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_00045 -0.6 -1.6 glycerol acyltransferase compare
PS417_10210 -0.6 -2.7 hypothetical protein compare
PS417_06500 -0.6 -0.8 hypothetical protein compare
PS417_25790 -0.6 -2.5 aminoglycoside phosphotransferase compare
PS417_15970 -0.6 -2.5 hypothetical protein compare
PS417_16885 -0.6 -1.7 hypothetical protein compare
PS417_07615 -0.6 -2.9 TetR family transcriptional regulator compare
PS417_11585 -0.6 -1.3 LuxR family transcriptional regulator compare
PS417_09630 -0.6 -3.1 glycosyl transferase compare
PS417_06770 -0.6 -2.9 multidrug transporter compare
PS417_22700 -0.6 -2.0 RNA polymerase subunit sigma-24 compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms