Experiment set7IT032 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x

200 most detrimental genes:

  gene name fitness t score description  
PS417_27815 +1.5 1.9 hypothetical protein compare
PS417_11925 +1.2 2.2 hypothetical protein compare
PS417_19885 +1.1 4.0 flagellar basal body rod protein FlgG compare
PS417_13205 +1.0 3.1 isochorismate-pyruvate lyase compare
PS417_19825 +1.0 6.3 ATPase AAA compare
PS417_26240 +1.0 2.4 N-methylproline demethylase compare
PS417_03385 +1.0 1.8 flavin reductase compare
PS417_08685 +0.9 1.8 flagellar hook-length control protein FliK compare
PS417_10910 +0.9 1.9 FAD-dependent oxidoreductase compare
PS417_19765 +0.9 5.2 flagellar hook-length control protein compare
PS417_26805 +0.9 1.0 cell division protein FtsE compare
PS417_26420 +0.9 1.4 hypothetical protein compare
PS417_10405 +0.8 1.1 filamentous hemagglutinin compare
PS417_10575 +0.8 2.5 DNA alkylation repair protein compare
PS417_23855 +0.8 1.7 ABC transporter substrate-binding protein compare
PS417_13490 +0.8 1.6 hypothetical protein compare
PS417_19795 +0.8 3.0 flagellar assembly protein FliH compare
PS417_19785 +0.8 2.8 flagellar biogenesis protein compare
PS417_17340 +0.8 2.5 GNAT family acetyltransferase compare
PS417_24935 +0.8 1.0 hypothetical protein compare
PS417_05165 +0.8 1.4 cytosol aminopeptidase compare
PS417_27135 +0.8 0.8 glutamine synthetase compare
PS417_18360 +0.8 1.6 hypothetical protein compare
PS417_26295 +0.7 2.4 gamma-butyrobetaine dioxygenase compare
PS417_21555 +0.7 4.5 flagellar hook protein FlgE compare
PS417_12900 +0.7 2.1 Fe-S protein compare
PS417_19745 +0.7 4.1 flagellar assembly protein FliO compare
PS417_06575 +0.7 1.7 DoxX compare
PS417_21595 +0.7 3.4 flagellar biosynthesis protein FlgN compare
PS417_08365 +0.7 0.9 hypothetical protein compare
PS417_09915 +0.7 1.4 hypothetical protein compare
PS417_04050 +0.7 1.6 peptide ABC transporter ATP-binding protein compare
PS417_24030 +0.7 1.6 MFS transporter compare
PS417_19710 +0.7 4.3 flagellar biosynthesis protein FlhA compare
PS417_19735 +0.7 3.5 flagellar biosynthesis protein FliQ compare
PS417_15935 +0.7 1.5 Rrf2 family transcriptional regulator compare
PS417_21585 +0.7 4.5 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_02045 +0.7 1.6 3-oxoacyl-ACP synthase compare
PS417_21780 +0.7 2.6 argininosuccinate lyase compare
PS417_06025 +0.7 2.3 alpha/beta hydrolase compare
PS417_24895 +0.7 0.9 hypothetical protein compare
PS417_08025 +0.7 0.9 acetylornithine aminotransferase compare
PS417_10720 +0.7 2.8 chemotaxis protein CheY compare
PS417_10655 +0.7 2.6 LuxR family transcriptional regulator compare
PS417_18940 +0.7 2.3 LysR family transcriptional regulator compare
PS417_09575 +0.7 1.6 glutathione S-transferase compare
PS417_19830 +0.6 1.9 flagellar assembly protein FliT compare
PS417_03900 +0.6 2.6 type II secretion system protein F compare
PS417_00705 +0.6 1.6 MarR family transcriptional regulator compare
PS417_13165 +0.6 1.1 peroxidase compare
PS417_22375 +0.6 0.8 cold-shock protein compare
PS417_21570 +0.6 3.1 flagellar basal body rod protein FlgB compare
PS417_02980 +0.6 1.1 chemotaxis protein compare
PS417_03430 +0.6 1.9 methyltransferase type 11 compare
PS417_16520 +0.6 1.6 cold-shock protein compare
PS417_17795 +0.6 1.4 ABC transporter permease compare
PS417_19790 +0.6 1.8 ATP synthase compare
PS417_21655 +0.6 0.8 aspartate kinase compare
PS417_19880 +0.6 3.1 flagellar basal body L-ring protein compare
PS417_02770 +0.6 2.2 membrane protein compare
PS417_09605 +0.6 1.1 glycosyl transferase compare
PS417_11945 +0.6 1.2 hypothetical protein compare
PS417_05545 +0.6 3.4 amino acid ABC transporter ATP-binding protein compare
PS417_17440 +0.6 1.3 beta-lactamase compare
PS417_18635 +0.6 1.9 4-hydroxybenzoyl-CoA thioesterase compare
PS417_18620 +0.6 1.6 hypothetical protein compare
PS417_16045 +0.6 1.7 acyl-CoA dehydrogenase compare
PS417_05560 +0.6 1.3 ABC transporter compare
PS417_03380 +0.6 1.0 hypothetical protein compare
PS417_16000 +0.6 0.8 chemotaxis protein CheY compare
PS417_22955 +0.6 2.9 Fe-S protein compare
PS417_23045 +0.6 1.5 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
PS417_23715 +0.6 1.8 cupin compare
PS417_16255 +0.6 1.0 RNA polymerase sigma factor compare
PS417_01430 +0.6 1.6 chromosome segregation protein SMC compare
PS417_06445 +0.6 1.6 iron-siderophore ABC transporter permease compare
PS417_27910 +0.6 1.9 PppA compare
PS417_07565 +0.6 1.6 hypothetical protein compare
PS417_24535 +0.6 1.2 membrane protein compare
PS417_28450 +0.6 1.8 XRE family transcriptional regulator compare
PS417_14540 +0.6 0.9 cytochrome C oxidase subunit III compare
PS417_03455 +0.6 1.0 type III secretion protein compare
PS417_02370 +0.6 1.2 ADP-ribose pyrophosphatase compare
PS417_19695 +0.6 2.0 flagellar biosynthesis sigma factor compare
PS417_21565 +0.5 2.0 flagellar basal body rod protein FlgC compare
PS417_14675 +0.5 3.3 aldehyde dehydrogenase compare
PS417_18250 +0.5 1.5 chemotaxis protein compare
PS417_21680 +0.5 1.9 succinylglutamate desuccinylase compare
PS417_12175 +0.5 1.5 peptide ABC transporter permease compare
PS417_03475 +0.5 2.1 type III secretion protein compare
PS417_14285 +0.5 2.0 hypothetical protein compare
PS417_24235 +0.5 1.3 hypothetical protein compare
PS417_28270 +0.5 1.8 hypothetical protein compare
PS417_13735 +0.5 0.8 hypothetical protein compare
PS417_21955 +0.5 2.1 dehydrogenase compare
PS417_05255 +0.5 1.6 hypothetical protein compare
PS417_09925 +0.5 1.7 hypothetical protein compare
PS417_17320 +0.5 2.1 phenylhydantoinase compare
PS417_05100 +0.5 1.0 RNA polymerase sigma factor compare
PS417_06620 +0.5 1.6 hypothetical protein compare
PS417_01465 +0.5 2.0 hypothetical protein compare
PS417_12245 +0.5 1.8 GNAT family acetyltransferase compare
PS417_07820 +0.5 1.2 transposase compare
PS417_08830 +0.5 2.5 membrane protein compare
PS417_27055 +0.5 1.8 hypothetical protein compare
PS417_08650 +0.5 1.2 transcriptional regulator compare
PS417_11875 +0.5 2.0 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare
PS417_03780 +0.5 2.1 general secretion pathway protein GspH compare
PS417_14755 +0.5 1.3 UV damage repair endonuclease UvdE compare
PS417_20515 +0.5 1.7 FMN-dependent NADH-azoreductase compare
PS417_02705 +0.5 0.9 urease accessory protein UreF compare
PS417_11440 +0.5 1.1 hypothetical protein compare
PS417_19725 +0.5 2.0 flagellar biosynthesis protein FlhB compare
PS417_00845 +0.5 0.9 transcriptional regulator compare
PS417_27315 +0.5 1.0 hypothetical protein compare
PS417_15875 +0.5 1.0 LuxR family transcriptional regulator compare
PS417_28405 +0.5 1.9 hypothetical protein compare
PS417_05085 +0.5 2.9 ribosomal subunit interface protein compare
PS417_15495 +0.5 1.4 FAD-dependent oxidoreductase compare
PS417_21180 +0.5 1.6 short-chain dehydrogenase compare
PS417_19840 +0.5 3.3 flagellar cap protein FliD compare
PS417_17035 +0.5 0.8 Cro/Cl family transcriptional regulator compare
PS417_05140 +0.5 1.2 dipicolinate synthase compare
PS417_15540 +0.5 0.7 NUDIX hydrolase compare
PS417_14595 +0.5 1.3 pyrroline-5-carboxylate reductase compare
PS417_13090 +0.5 1.7 dienelactone hydrolase compare
PS417_05405 +0.5 3.2 L-alanine and D-alanine permease (from data) compare
PS417_01875 +0.5 1.0 polyhydroxyalkanoic acid system protein compare
PS417_02895 +0.5 0.8 precorrin-6Y C5,15-methyltransferase compare
PS417_09470 +0.5 0.6 hypothetical protein compare
PS417_16160 +0.5 1.3 ABC transporter substrate-binding protein compare
PS417_02340 +0.5 1.9 LysR family transcriptional regulator compare
PS417_27165 +0.5 1.8 alkanesulfonate monooxygenase compare
PS417_28265 +0.5 1.1 pyridoxamine kinase compare
PS417_08530 +0.5 2.4 spermidine synthase compare
PS417_19820 +0.5 2.0 histidine kinase compare
PS417_24370 +0.5 0.5 (2Fe-2S)-binding protein compare
PS417_25280 +0.5 2.0 methyltransferase compare
PS417_15255 +0.5 2.3 serine/threonine protein kinase compare
PS417_06685 +0.5 0.6 beta-ketoadipyl CoA thiolase compare
PS417_18025 +0.5 1.8 cytochrome C compare
PS417_10130 +0.5 1.5 hypothetical protein compare
PS417_02845 +0.5 1.7 ABC transporter permease compare
PS417_26560 +0.5 2.6 amino acid dehydrogenase compare
PS417_07700 +0.5 1.0 chromosome partitioning protein ParA compare
PS417_18445 +0.5 1.5 glycerol-3-phosphatase compare
PS417_21560 +0.5 1.8 flagellar basal body rod modification protein FlgD compare
PS417_03895 +0.5 1.6 methyltransferase compare
PS417_27555 +0.5 1.8 DNA-binding protein compare
PS417_02160 +0.5 0.6 hypothetical protein compare
PS417_20790 +0.5 2.0 adenine phosphoribosyltransferase compare
PS417_00510 +0.5 0.5 membrane protein compare
PS417_18570 +0.5 1.4 peptidoglycan-binding protein compare
PS417_15435 +0.5 2.2 metallophosphatase compare
PS417_15820 +0.5 1.8 universal stress protein UspA compare
PS417_19720 +0.5 0.7 DNA-binding protein compare
PS417_26750 +0.5 1.7 homoserine acetyltransferase compare
PS417_14420 +0.5 2.2 acyl-CoA dehydrogenase compare
PS417_12730 +0.5 1.2 glycosyltransferase compare
PS417_15665 +0.5 1.0 hypothetical protein compare
PS417_28425 +0.5 1.6 lysine transporter LysE compare
PS417_09825 +0.4 2.3 hypothetical protein compare
PS417_19135 +0.4 1.4 DeoR faimly transcriptional regulator compare
PS417_05570 +0.4 1.9 DeoR faimly transcriptional regulator compare
PS417_01780 +0.4 1.6 proline iminopeptidase compare
PS417_15650 +0.4 1.0 glutamine amidotransferase compare
PS417_14065 +0.4 2.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_27875 +0.4 2.2 histidine kinase compare
PS417_24165 +0.4 1.7 hypothetical protein compare
PS417_18125 +0.4 1.7 polar amino acid ABC transporter permease compare
PS417_19865 +0.4 3.0 flagellar hook protein FlgK compare
PS417_28170 +0.4 2.0 transcriptional regulator compare
PS417_07290 +0.4 2.5 aldehyde dehydrogenase compare
PS417_02740 +0.4 0.8 LysR family transcriptional regulator compare
PS417_08090 +0.4 0.5 3-oxoacyl-ACP reductase compare
PS417_17500 +0.4 2.1 sulfurtransferase compare
PS417_16860 +0.4 1.1 diadenosine tetraphosphate hydrolase compare
PS417_18090 +0.4 1.5 iron ABC transporter compare
PS417_26605 +0.4 0.7 malonate decarboxylase subunit beta compare
PS417_16295 +0.4 2.0 hypothetical protein compare
PS417_22315 +0.4 1.0 DNA-3-methyladenine glycosylase compare
PS417_16240 +0.4 1.4 ABC transporter ATP-binding protein compare
PS417_12155 +0.4 1.9 transporter compare
PS417_02745 +0.4 1.2 FMN-dependent NADH-azoreductase compare
PS417_16510 +0.4 1.2 Clp protease ClpX compare
PS417_13965 +0.4 1.0 acetoin utilization protein compare
PS417_04960 +0.4 0.9 hypothetical protein compare
PS417_24430 +0.4 0.8 3-dehydroquinate dehydratase compare
PS417_16320 +0.4 0.8 protein tyrosine phosphatase compare
PS417_00295 +0.4 2.1 hypothetical protein compare
PS417_18485 +0.4 1.8 membrane protein compare
PS417_22630 +0.4 1.0 hypothetical protein compare
PS417_12765 +0.4 1.5 oxidoreductase compare
PS417_02465 +0.4 1.4 carbohydrate kinase compare
PS417_12125 +0.4 1.3 D-glucosaminate dehydratase (EC 4.3.1.9) (from data) compare
PS417_19730 +0.4 0.6 flagellar biosynthesis protein FliR compare
PS417_19510 +0.4 1.7 N-acetylmuramoyl-L-alanine amidase compare
PS417_07455 +0.4 0.7 glutamine amidotransferase compare
PS417_21425 +0.4 0.7 4-amino-4-deoxychorismate lyase compare
PS417_07465 +0.4 1.7 LysR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms