Experiment set7IT031 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x

200 most important genes:

  gene name fitness t score description  
PS417_24155 -5.6 -7.4 ATP-binding protein compare
PS417_08125 -4.3 -2.2 prephenate dehydratase compare
PS417_27795 -4.2 -1.5 orotate phosphoribosyltransferase compare
PS417_02415 -3.8 -6.2 phosphoserine phosphatase compare
PS417_24745 -3.7 -7.3 gamma-glutamyl phosphate reductase compare
PS417_05595 -3.7 -9.4 ornithine carbamoyltransferase compare
PS417_27040 -3.7 -4.4 3-phosphoglycerate dehydrogenase compare
PS417_27195 -3.4 -2.4 N-acetylglutamate synthase compare
PS417_20160 -3.3 -6.4 cysteine synthase compare
PS417_23995 -3.2 -1.6 preprotein translocase subunit SecG compare
PS417_23545 -3.2 -6.3 gamma-glutamyl kinase compare
PS417_20985 -3.1 -6.7 porin compare
PS417_02000 -2.9 -16.2 glutamate synthase compare
PS417_22690 -2.7 -5.7 phosphogluconate dehydratase compare
PS417_26730 -2.7 -1.4 pyrroline-5-carboxylate reductase compare
PS417_02005 -2.6 -13.9 glutamate synthase compare
PS417_01605 -2.4 -2.1 phosphoglycerate mutase compare
PS417_02510 -2.3 -4.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_00180 -2.3 -5.4 tryptophan synthase subunit alpha compare
PS417_01570 -2.2 -5.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_28220 -2.2 -4.1 LysR family transcriptional regulator compare
PS417_01855 -2.1 -2.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_20125 -2.1 -4.3 phosphoribosylglycinamide formyltransferase compare
PS417_27435 -2.0 -7.8 polyphosphate kinase compare
PS417_07170 -2.0 -4.4 hypothetical protein compare
PS417_07165 -2.0 -4.0 dihydrodipicolinate synthase compare
PS417_04415 -1.9 -9.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01850 -1.9 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01575 -1.9 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27870 -1.9 -5.3 ATP-dependent DNA helicase RecG compare
PS417_00195 -1.8 -4.0 hypothetical protein compare
PS417_01560 -1.8 -4.2 imidazoleglycerol-phosphate dehydratase compare
PS417_22450 -1.7 -2.4 ATP-dependent DNA helicase RuvA compare
PS417_01565 -1.7 -5.6 imidazole glycerol phosphate synthase compare
PS417_23950 -1.6 -2.9 polynucleotide phosphorylase/polyadenylase compare
PS417_03560 -1.6 -2.6 GTP-binding protein compare
PS417_23810 -1.6 -10.9 acetolactate synthase 3 catalytic subunit compare
PS417_23805 -1.5 -4.8 acetolactate synthase 3 regulatory subunit compare
PS417_04420 -1.5 -9.3 histidinol dehydrogenase compare
PS417_22620 -1.5 -3.8 pyruvate kinase compare
PS417_27800 -1.5 -5.2 exodeoxyribonuclease III compare
PS417_09235 -1.5 -1.7 molecular chaperone compare
PS417_23770 -1.4 -2.9 exodeoxyribonuclease V subunit alpha compare
PS417_12855 -1.4 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_03260 -1.4 -2.7 5S ribosomal RNA compare
PS417_08245 -1.4 -1.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_06770 -1.3 -6.2 multidrug transporter compare
PS417_26890 -1.3 -5.2 dihydroxy-acid dehydratase compare
PS417_05695 -1.3 -4.9 transcriptional regulator compare
PS417_22520 -1.3 -3.6 histidine kinase compare
PS417_18560 -1.3 -4.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_15930 -1.3 -3.8 thioredoxin reductase compare
PS417_21630 -1.3 -3.0 magnesium transporter compare
PS417_08185 -1.3 -4.6 glycosyl transferase compare
PS417_06680 -1.2 -8.1 nuclease PIN compare
PS417_01580 -1.2 -1.0 imidazole glycerol phosphate synthase compare
PS417_23800 -1.2 -6.4 ketol-acid reductoisomerase compare
PS417_00185 -1.2 -3.7 tryptophan synthase subunit beta compare
PS417_15215 -1.2 -2.5 protein activator of alkane oxidation PraA compare
PS417_09245 -1.2 -1.2 recombinase RdgC compare
PS417_16715 -1.2 -2.1 DoxX family protein compare
PS417_08155 -1.2 -2.5 integration host factor subunit beta compare
PS417_10675 -1.2 -1.2 TetR family transcriptional regulator compare
PS417_08230 -1.2 -2.7 lipopolysaccharide biosynthesis protein RfbH compare
PS417_23375 -1.1 -2.2 cytochrome C oxidase compare
PS417_26995 -1.1 -5.9 phosphoserine phosphatase compare
PS417_04410 -1.1 -1.5 hypothetical protein compare
PS417_17610 -1.1 -1.7 AsnC family transcriptional regulator compare
PS417_03815 -1.1 -3.9 DNA transporter compare
PS417_17945 -1.1 -1.0 hypothetical protein compare
PS417_27585 -1.1 -2.5 diaminopimelate epimerase compare
PS417_01915 -1.1 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_02555 -1.1 -7.9 exoribonuclease R compare
PS417_11175 -1.1 -2.5 AraC family transcriptional regulator compare
PS417_18530 -1.1 -3.9 O-succinylhomoserine sulfhydrylase compare
PS417_25715 -1.0 -3.5 anthranilate phosphoribosyltransferase compare
PS417_27835 -1.0 -4.2 endoribonuclease compare
PS417_06775 -1.0 -4.5 antibiotic transporter compare
PS417_08410 -1.0 -2.5 hypothetical protein compare
PS417_12540 -1.0 -3.0 hypothetical protein compare
PS417_03145 -1.0 -2.6 acetyl-CoA acetyltransferase compare
PS417_06200 -1.0 -5.0 protein-PII uridylyltransferase compare
PS417_22580 -0.9 -3.2 membrane protein compare
PS417_23775 -0.9 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_26740 -0.9 -3.8 homoserine acetyltransferase compare
PS417_19675 -0.9 -3.1 chemotaxis protein CheY compare
PS417_17240 -0.9 -2.4 trigger factor compare
PS417_06645 -0.9 -5.5 RNA polymerase-associated protein RapA compare
PS417_20635 -0.9 -1.1 ABC transporter ATP-binding protein compare
PS417_27940 -0.9 -1.4 type VI secretion protein compare
PS417_10425 -0.9 -1.5 hypothetical protein compare
PS417_05445 -0.9 -1.4 DNA mismatch repair protein MutT compare
PS417_27315 -0.9 -1.2 hypothetical protein compare
PS417_17645 -0.9 -1.3 RND transporter compare
PS417_05155 -0.9 -2.8 DNA polymerase III subunit chi compare
PS417_20855 -0.9 -1.5 hypothetical protein compare
PS417_13855 -0.9 -1.3 acetyl-CoA acetyltransferase compare
PS417_02950 -0.9 -2.1 tRNA-dihydrouridine synthase B compare
PS417_04585 -0.9 -1.5 hypothetical protein compare
PS417_02700 -0.9 -3.4 urease accessory protein UreG compare
PS417_04375 -0.9 -2.6 ABC transporter ATP-binding protein compare
PS417_05785 -0.9 -3.2 tail protein compare
PS417_21285 -0.9 -3.4 hypothetical protein compare
PS417_18600 -0.9 -1.8 isopropylmalate isomerase compare
PS417_17560 -0.8 -2.8 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_05160 -0.8 -0.8 DNA polymerase III subunit chi compare
PS417_15095 -0.8 -2.8 hypothetical protein compare
PS417_00345 -0.8 -1.5 copper-binding protein compare
PS417_08200 -0.8 -2.3 hypothetical protein compare
PS417_10220 -0.8 -3.3 hypothetical protein compare
PS417_13885 -0.8 -2.5 chemotaxis protein CheY compare
PS417_18690 -0.8 -3.0 aromatic amino acid aminotransferase compare
PS417_15285 -0.8 -0.9 type VI secretion protein compare
PS417_17350 -0.8 -2.5 copper resistance protein CopD compare
PS417_04385 -0.8 -3.0 organic solvent ABC transporter substrate-binding protein compare
PS417_04225 -0.8 -2.4 conjugal transfer protein TraR compare
PS417_19645 -0.8 -1.1 chemotaxis protein compare
PS417_10025 -0.8 -1.2 bacteriophage lambda NinG family protein compare
PS417_13510 -0.8 -1.1 polyketide cyclase compare
PS417_18070 -0.8 -1.0 general secretion pathway protein GspH compare
PS417_18585 -0.8 -3.9 3-isopropylmalate dehydrogenase compare
PS417_08205 -0.8 -2.1 acetyltransferase compare
PS417_12660 -0.8 -1.2 hypothetical protein compare
PS417_17190 -0.8 -2.8 MarR family transcriptional regulator compare
PS417_04650 -0.8 -1.2 D-alanine--D-alanine ligase compare
PS417_22175 -0.8 -1.5 amino acid transporter LysE compare
PS417_21850 -0.8 -1.1 LysR family transcriptional regulator compare
PS417_03045 -0.8 -1.6 hypothetical protein compare
PS417_02270 -0.8 -2.3 carbamoyltransferase compare
PS417_10985 -0.7 -0.8 NADH:flavin oxidoreductase compare
PS417_00375 -0.7 -1.8 membrane protein compare
PS417_08190 -0.7 -5.6 membrane protein compare
PS417_24500 -0.7 -2.9 DEAD/DEAH box helicase compare
PS417_02105 -0.7 -1.9 acyl carrier protein compare
PS417_05825 -0.7 -2.6 cytochrome D ubiquinol oxidase subunit II compare
PS417_00975 -0.7 -1.4 hypothetical protein compare
PS417_22570 -0.7 -0.8 H-NS histone compare
PS417_09505 -0.7 -2.3 hypothetical protein compare
PS417_10665 -0.7 -2.1 hypothetical protein compare
PS417_20025 -0.7 -1.3 alpha-ribazole phosphatase compare
PS417_22085 -0.7 -1.4 aldehyde dehydrogenase compare
PS417_22810 -0.7 -1.4 DNA base-flipping protein YbaZ compare
PS417_00085 -0.7 -1.3 16S rRNA methyltransferase compare
PS417_26470 -0.7 -1.8 cytochrome C compare
PS417_08195 -0.7 -4.6 hypothetical protein compare
PS417_27960 -0.7 -2.3 Hcp1 family type VI secretion system effector compare
PS417_27445 -0.7 -3.9 membrane protein compare
PS417_05235 -0.7 -1.5 peptidase inhibitor I42 compare
PS417_09865 -0.7 -1.3 hypothetical protein compare
PS417_08220 -0.7 -0.9 epimerase compare
PS417_16490 -0.7 -1.0 cell division protein FtsK compare
PS417_08045 -0.7 -1.0 uracil permease compare
PS417_19755 -0.7 -1.2 flagellar motor switch protein FliM compare
PS417_24525 -0.7 -1.2 nuclease compare
PS417_13800 -0.7 -2.6 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_17565 -0.7 -2.0 branched-chain amino acid aminotransferase compare
PS417_04305 -0.7 -0.9 aspartate ammonia-lyase compare
PS417_05790 -0.7 -2.4 hypothetical protein compare
PS417_18860 -0.7 -2.7 transcriptional regulator compare
PS417_13195 -0.7 -2.1 RND transporter MFP subunit compare
PS417_22640 -0.7 -2.8 cytochrome C biogenesis protein CcmE compare
PS417_06835 -0.7 -1.8 phospholipase compare
PS417_26985 -0.7 -2.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_10210 -0.7 -2.6 hypothetical protein compare
PS417_02210 -0.7 -2.8 diguanylate cyclase compare
PS417_06500 -0.7 -0.8 hypothetical protein compare
PS417_28515 -0.7 -1.7 16S rRNA methyltransferase compare
PS417_02280 -0.7 -0.7 GlcNAc-PI de-N-acetylase compare
PS417_04390 -0.7 -1.7 toluene tolerance protein compare
PS417_07595 -0.7 -1.9 PasA protein compare
PS417_07870 -0.7 -1.2 hypothetical protein compare
PS417_26155 -0.7 -1.5 hypothetical protein compare
PS417_13730 -0.7 -1.4 hypothetical protein compare
PS417_23590 -0.7 -2.7 bleomycin resistance protein compare
PS417_03515 -0.6 -1.4 type III secretion protein compare
PS417_23110 -0.6 -4.0 2-isopropylmalate synthase compare
PS417_15290 -0.6 -1.2 type VI secretion protein compare
PS417_08540 -0.6 -2.0 RNA helicase compare
PS417_06165 -0.6 -1.8 thiamine biosynthesis protein ThiF compare
PS417_06355 -0.6 -1.3 protein-L-isoaspartate O-methyltransferase compare
PS417_13735 -0.6 -0.7 hypothetical protein compare
PS417_04270 -0.6 -3.3 ribonuclease G compare
PS417_17215 -0.6 -1.9 peptidylprolyl isomerase compare
PS417_18595 -0.6 -2.2 3-isopropylmalate dehydratase compare
PS417_17810 -0.6 -2.0 microcin B17-processing protein McbB compare
PS417_04980 -0.6 -2.1 response regulator receiver protein compare
PS417_05830 -0.6 -2.7 hypothetical protein compare
PS417_06600 -0.6 -0.7 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_03100 -0.6 -0.7 pilus assembly protein compare
PS417_14805 -0.6 -0.9 AraC family transcriptional regulator compare
PS417_27005 -0.6 -0.7 membrane protein compare
PS417_13755 -0.6 -2.1 oxidoreductase compare
PS417_06145 -0.6 -0.9 hypothetical protein compare
PS417_25710 -0.6 -0.8 indole-3-glycerol-phosphate synthase compare
PS417_21400 -0.6 -2.2 TetR family transcriptional regulator compare
PS417_19095 -0.6 -1.1 hypothetical protein compare
PS417_07300 -0.6 -2.5 LysR family transcriptional regulator compare
PS417_12455 -0.6 -1.8 hydrolase compare
PS417_07540 -0.6 -1.4 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_27490 -0.6 -1.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms