Experiment set7IT030 for Pseudomonas simiae WCS417

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

200 most important genes:

  gene name fitness t score description  
PS417_20985 -4.8 -4.7 porin compare
PS417_08125 -4.2 -2.1 prephenate dehydratase compare
PS417_24155 -4.0 -4.3 ATP-binding protein compare
PS417_27795 -4.0 -1.4 orotate phosphoribosyltransferase compare
PS417_27195 -3.8 -1.8 N-acetylglutamate synthase compare
PS417_01605 -3.7 -3.4 phosphoglycerate mutase compare
PS417_00185 -3.5 -5.2 tryptophan synthase subunit beta compare
PS417_01635 -3.2 -11.9 nitrogen regulation protein NR(I) compare
PS417_06200 -3.2 -9.9 protein-PII uridylyltransferase compare
PS417_02415 -3.1 -6.5 phosphoserine phosphatase compare
PS417_23545 -3.1 -3.2 gamma-glutamyl kinase compare
PS417_27040 -3.0 -4.3 3-phosphoglycerate dehydrogenase compare
PS417_24745 -2.8 -7.1 gamma-glutamyl phosphate reductase compare
PS417_05595 -2.8 -9.6 ornithine carbamoyltransferase compare
PS417_01575 -2.7 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02000 -2.6 -12.4 glutamate synthase compare
PS417_01640 -2.6 -6.2 histidine kinase compare
PS417_02005 -2.5 -9.1 glutamate synthase compare
PS417_02510 -2.3 -4.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_01565 -2.2 -6.9 imidazole glycerol phosphate synthase compare
PS417_20160 -2.2 -3.3 cysteine synthase compare
PS417_07170 -2.2 -4.3 hypothetical protein compare
PS417_01855 -2.2 -3.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_00180 -2.1 -3.6 tryptophan synthase subunit alpha compare
PS417_01560 -2.1 -2.5 imidazoleglycerol-phosphate dehydratase compare
PS417_27435 -2.1 -5.8 polyphosphate kinase compare
PS417_22690 -2.0 -5.0 phosphogluconate dehydratase compare
PS417_06375 -2.0 -1.1 deoxycytidine triphosphate deaminase compare
PS417_23810 -2.0 -12.1 acetolactate synthase 3 catalytic subunit compare
PS417_08220 -1.9 -1.7 epimerase compare
PS417_28220 -1.9 -3.4 LysR family transcriptional regulator compare
PS417_20125 -1.9 -3.6 phosphoribosylglycinamide formyltransferase compare
PS417_22520 -1.9 -2.9 histidine kinase compare
PS417_23800 -1.8 -11.0 ketol-acid reductoisomerase compare
PS417_04415 -1.8 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_26890 -1.8 -8.5 dihydroxy-acid dehydratase compare
PS417_23770 -1.8 -2.8 exodeoxyribonuclease V subunit alpha compare
PS417_04375 -1.8 -3.5 ABC transporter ATP-binding protein compare
PS417_08230 -1.8 -3.5 lipopolysaccharide biosynthesis protein RfbH compare
PS417_17945 -1.7 -1.4 hypothetical protein compare
PS417_04420 -1.7 -8.2 histidinol dehydrogenase compare
PS417_22450 -1.7 -2.1 ATP-dependent DNA helicase RuvA compare
PS417_01850 -1.7 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_16465 -1.7 -7.5 sirohydrochlorin ferrochelatase compare
PS417_23375 -1.7 -2.7 cytochrome C oxidase compare
PS417_06540 -1.6 -1.9 membrane protein compare
PS417_14730 -1.6 -8.7 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
PS417_22850 -1.6 -7.3 virulence factor family protein compare
PS417_14725 -1.6 -5.4 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
PS417_06530 -1.5 -3.7 membrane protein compare
PS417_08245 -1.5 -1.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_04270 -1.5 -7.1 ribonuclease G compare
PS417_05885 -1.5 -7.2 potassium transporter Kup compare
PS417_08200 -1.5 -4.7 hypothetical protein compare
PS417_18560 -1.5 -7.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_08185 -1.5 -6.4 glycosyl transferase compare
PS417_05975 -1.4 -0.9 chemotaxis protein CheW compare
PS417_08205 -1.4 -3.8 acetyltransferase compare
PS417_04275 -1.4 -10.2 hypothetical protein compare
PS417_27870 -1.4 -2.9 ATP-dependent DNA helicase RecG compare
PS417_06145 -1.4 -1.5 hypothetical protein compare
PS417_01570 -1.3 -1.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_25715 -1.3 -4.1 anthranilate phosphoribosyltransferase compare
PS417_17070 -1.3 -2.7 RNA polymerase subunit sigma-24 compare
PS417_23370 -1.3 -4.9 protoheme IX farnesyltransferase compare
PS417_04875 -1.3 -1.8 molybdenum cofactor biosynthesis protein MoaE compare
PS417_20965 -1.2 -6.0 histidine kinase compare
PS417_21125 -1.2 -5.4 phosphoadenosine phosphosulfate reductase compare
PS417_19675 -1.2 -4.9 chemotaxis protein CheY compare
PS417_01580 -1.2 -1.7 imidazole glycerol phosphate synthase compare
PS417_08195 -1.2 -6.6 hypothetical protein compare
PS417_23775 -1.2 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_08190 -1.2 -9.2 membrane protein compare
PS417_23805 -1.2 -5.3 acetolactate synthase 3 regulatory subunit compare
PS417_19605 -1.2 -1.7 hypothetical protein compare
PS417_07165 -1.2 -3.2 dihydrodipicolinate synthase compare
PS417_23950 -1.2 -2.4 polynucleotide phosphorylase/polyadenylase compare
PS417_26730 -1.2 -0.8 pyrroline-5-carboxylate reductase compare
PS417_00385 -1.2 -1.2 Fur family transcriptional regulator compare
PS417_05695 -1.2 -4.6 transcriptional regulator compare
PS417_10220 -1.2 -5.4 hypothetical protein compare
PS417_04410 -1.2 -1.6 hypothetical protein compare
PS417_04390 -1.2 -4.3 toluene tolerance protein compare
PS417_10245 -1.2 -1.1 hypothetical protein compare
PS417_12855 -1.2 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26995 -1.1 -5.7 phosphoserine phosphatase compare
PS417_11175 -1.1 -2.6 AraC family transcriptional regulator compare
PS417_04380 -1.1 -2.0 ABC transporter permease compare
PS417_20650 -1.1 -6.3 hypothetical protein compare
PS417_08665 -1.1 -4.0 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_25725 -1.1 -7.1 anthranilate synthase component I compare
PS417_22845 -1.1 -8.8 membrane protein compare
PS417_23380 -1.1 -1.9 cytochrome o ubiquinol oxidase subunit III compare
PS417_06600 -1.1 -1.1 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_27445 -1.1 -6.7 membrane protein compare
PS417_08225 -1.1 -4.7 acetolactate synthase compare
PS417_13195 -1.0 -2.0 RND transporter MFP subunit compare
PS417_08670 -1.0 -3.1 molybdopterin biosynthesis protein B compare
PS417_27005 -1.0 -1.0 membrane protein compare
PS417_14735 -1.0 -5.2 Nitrate reductase (EC 1.7.99.4) (from data) compare
PS417_21395 -1.0 -6.4 radical SAM protein compare
PS417_24800 -1.0 -3.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_09235 -1.0 -1.3 molecular chaperone compare
PS417_13800 -1.0 -2.8 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_26990 -1.0 -1.1 RNA pyrophosphohydrolase compare
PS417_26985 -1.0 -3.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_04385 -1.0 -4.5 organic solvent ABC transporter substrate-binding protein compare
PS417_26745 -1.0 -5.0 methionine biosynthesis protein MetW compare
PS417_23580 -1.0 -1.6 peptidylprolyl isomerase compare
PS417_23995 -1.0 -0.9 preprotein translocase subunit SecG compare
PS417_14065 -1.0 -4.3 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_14805 -1.0 -1.4 AraC family transcriptional regulator compare
PS417_14115 -1.0 -4.5 molybdate ABC transporter substrate-binding protein compare
PS417_02270 -1.0 -3.6 carbamoyltransferase compare
PS417_25720 -1.0 -5.0 anthranilate synthase component II compare
PS417_11360 -1.0 -2.5 energy transducer TonB compare
PS417_16555 -1.0 -1.9 cupin compare
PS417_13885 -0.9 -2.6 chemotaxis protein CheY compare
PS417_06710 -0.9 -1.6 beta-ketoadipyl CoA thiolase compare
PS417_07710 -0.9 -4.8 membrane protein compare
PS417_25710 -0.9 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_26230 -0.9 -3.3 electron transfer flavoprotein subunit alpha compare
PS417_22445 -0.9 -3.0 ATP-dependent DNA helicase RuvB compare
PS417_26470 -0.9 -2.1 cytochrome C compare
PS417_06095 -0.9 -1.7 energy transducer TonB compare
PS417_07540 -0.9 -2.9 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_08540 -0.9 -2.6 RNA helicase compare
PS417_20715 -0.9 -1.9 cytochrome Cbb3 compare
PS417_02555 -0.9 -7.1 exoribonuclease R compare
PS417_13425 -0.9 -1.0 cupin compare
PS417_16715 -0.9 -1.4 DoxX family protein compare
PS417_14120 -0.9 -3.8 molybdenum ABC transporter permease compare
PS417_06165 -0.9 -2.9 thiamine biosynthesis protein ThiF compare
PS417_23625 -0.9 -2.0 LysR family transcriptional regulator compare
PS417_13820 -0.9 -3.5 UDP-glucose 6-dehydrogenase compare
PS417_11615 -0.9 -1.5 urea ABC transporter ATP-binding protein compare
PS417_03100 -0.9 -0.8 pilus assembly protein compare
PS417_03560 -0.9 -1.1 GTP-binding protein compare
PS417_22840 -0.9 -1.5 tRNA-Met compare
PS417_23385 -0.9 -4.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_12290 -0.9 -4.3 sulfite reductase compare
PS417_23390 -0.9 -4.7 ubiquinol oxidase subunit II compare
PS417_16560 -0.9 -2.1 GNAT family acetyltransferase compare
PS417_01965 -0.8 -2.0 fimbriae biosynthesis protein compare
PS417_13160 -0.8 -3.6 iron transporter compare
PS417_16915 -0.8 -4.4 hemolysin D compare
PS417_10920 -0.8 -1.8 LysR family transcriptional regulator compare
PS417_20960 -0.8 -3.7 Nitrate-binding regulatory protein (nasS) (from data) compare
PS417_21000 -0.8 -1.0 CrfX protein compare
PS417_18600 -0.8 -1.3 isopropylmalate isomerase compare
PS417_20645 -0.8 -5.3 membrane protein compare
PS417_13790 -0.8 -2.3 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_03145 -0.8 -1.8 acetyl-CoA acetyltransferase compare
PS417_14315 -0.8 -2.3 2,5-dioxovalerate dehydrogenase compare
PS417_05510 -0.8 -3.3 alpha/beta hydrolase compare
PS417_02385 -0.8 -1.2 esterase compare
PS417_12695 -0.8 -3.4 mannitol dehydrogenase compare
PS417_18540 -0.8 -3.2 colicin V production CvpA compare
PS417_08135 -0.8 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_11770 -0.8 -1.3 pyruvate dehydrogenase compare
PS417_19285 -0.8 -1.0 ankyrin compare
PS417_26740 -0.8 -3.1 homoserine acetyltransferase compare
PS417_21515 -0.8 -5.0 transcriptional regulator compare
PS417_01630 -0.8 -0.9 hypothetical protein compare
PS417_18690 -0.8 -2.4 aromatic amino acid aminotransferase compare
PS417_12015 -0.8 -2.5 phosphoglycerate mutase compare
PS417_13170 -0.8 -2.9 multidrug DMT transporter permease compare
PS417_18425 -0.8 -1.5 sporulation protein compare
PS417_15135 -0.8 -1.1 hypothetical protein compare
PS417_03310 -0.7 -2.7 carbonate dehydratase compare
PS417_04650 -0.7 -1.1 D-alanine--D-alanine ligase compare
PS417_20635 -0.7 -0.8 ABC transporter ATP-binding protein compare
PS417_13795 -0.7 -4.2 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_09210 -0.7 -1.4 TetR family transcriptional regulator compare
PS417_15805 -0.7 -1.4 transporter compare
PS417_20665 -0.7 -3.2 hypothetical protein compare
PS417_16490 -0.7 -1.5 cell division protein FtsK compare
PS417_26335 -0.7 -1.6 BetI family transcriptional regulator compare
PS417_25825 -0.7 -1.8 sulfurtransferase compare
PS417_21890 -0.7 -1.5 magnesium transporter CorA compare
PS417_13510 -0.7 -1.0 polyketide cyclase compare
PS417_13075 -0.7 -1.0 hypothetical protein compare
PS417_20980 -0.7 -3.7 uroporphyrin-III methyltransferase compare
PS417_00085 -0.7 -2.3 16S rRNA methyltransferase compare
PS417_02630 -0.7 -2.2 NAD synthetase compare
PS417_01145 -0.7 -0.7 taurine transporter ATP-binding subunit compare
PS417_27205 -0.7 -1.7 adenylate cyclase compare
PS417_12840 -0.7 -3.0 TetR family transcriptional regulator compare
PS417_02720 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_18530 -0.7 -2.6 O-succinylhomoserine sulfhydrylase compare
PS417_04585 -0.7 -1.3 hypothetical protein compare
PS417_20705 -0.7 -1.6 cbb3-type cytochrome c oxidase subunit II compare
PS417_17215 -0.7 -2.4 peptidylprolyl isomerase compare
PS417_15890 -0.7 -1.1 RNA polymerase sigma factor compare
PS417_18860 -0.7 -2.1 transcriptional regulator compare
PS417_09330 -0.7 -1.9 NAD(P)H-quinone oxidoreductase compare
PS417_01920 -0.7 -1.3 ATP-dependent protease subunit HslV compare
PS417_13805 -0.7 -3.7 4-amino-4-deoxy-L-arabinose transferase compare
PS417_01270 -0.7 -1.3 iron ABC transporter substrate-binding protein compare
PS417_05155 -0.7 -2.0 DNA polymerase III subunit chi compare


Specific Phenotypes

For 4 genes in this experiment

For supernatant Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms