Experiment set7IT029 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_glucose with MS_media 1x

200 most important genes:

  gene name fitness t score description  
PS417_24155 -6.0 -5.8 ATP-binding protein compare
PS417_20985 -4.6 -7.0 porin compare
PS417_28220 -4.6 -4.0 LysR family transcriptional regulator compare
PS417_23995 -4.4 -1.7 preprotein translocase subunit SecG compare
PS417_24745 -4.1 -7.8 gamma-glutamyl phosphate reductase compare
PS417_02510 -3.9 -8.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_27040 -3.8 -4.3 3-phosphoglycerate dehydrogenase compare
PS417_02415 -3.7 -6.1 phosphoserine phosphatase compare
PS417_05595 -3.5 -11.2 ornithine carbamoyltransferase compare
PS417_00180 -3.5 -5.6 tryptophan synthase subunit alpha compare
PS417_01605 -3.2 -3.5 phosphoglycerate mutase compare
PS417_20160 -3.1 -4.1 cysteine synthase compare
PS417_01855 -3.0 -5.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_27435 -3.0 -9.0 polyphosphate kinase compare
PS417_27195 -2.9 -2.8 N-acetylglutamate synthase compare
PS417_27795 -2.9 -1.6 orotate phosphoribosyltransferase compare
PS417_23545 -2.8 -2.6 gamma-glutamyl kinase compare
PS417_04420 -2.8 -11.2 histidinol dehydrogenase compare
PS417_04415 -2.8 -7.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01575 -2.8 -6.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_26730 -2.7 -1.5 pyrroline-5-carboxylate reductase compare
PS417_01850 -2.7 -10.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_00185 -2.6 -5.9 tryptophan synthase subunit beta compare
PS417_22690 -2.5 -6.3 phosphogluconate dehydratase compare
PS417_23770 -2.4 -3.5 exodeoxyribonuclease V subunit alpha compare
PS417_27870 -2.4 -5.6 ATP-dependent DNA helicase RecG compare
PS417_01580 -2.3 -1.3 imidazole glycerol phosphate synthase compare
PS417_18560 -2.3 -11.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23800 -2.3 -9.0 ketol-acid reductoisomerase compare
PS417_01565 -2.3 -5.0 imidazole glycerol phosphate synthase compare
PS417_26995 -2.2 -8.9 phosphoserine phosphatase compare
PS417_23810 -2.2 -12.2 acetolactate synthase 3 catalytic subunit compare
PS417_08125 -2.2 -2.2 prephenate dehydratase compare
PS417_07170 -2.1 -4.3 hypothetical protein compare
PS417_20125 -2.0 -5.9 phosphoribosylglycinamide formyltransferase compare
PS417_01570 -2.0 -3.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_02005 -2.0 -11.2 glutamate synthase compare
PS417_18600 -2.0 -3.6 isopropylmalate isomerase compare
PS417_03100 -1.9 -1.5 pilus assembly protein compare
PS417_02000 -1.9 -11.5 glutamate synthase compare
PS417_01560 -1.9 -3.9 imidazoleglycerol-phosphate dehydratase compare
PS417_00550 -1.9 -2.0 hypothetical protein compare
PS417_23805 -1.9 -6.0 acetolactate synthase 3 regulatory subunit compare
PS417_25715 -1.8 -4.9 anthranilate phosphoribosyltransferase compare
PS417_27835 -1.8 -7.8 endoribonuclease compare
PS417_08185 -1.8 -6.6 glycosyl transferase compare
PS417_26890 -1.8 -6.3 dihydroxy-acid dehydratase compare
PS417_12855 -1.7 -4.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26740 -1.5 -6.9 homoserine acetyltransferase compare
PS417_22620 -1.5 -5.0 pyruvate kinase compare
PS417_00195 -1.5 -2.9 hypothetical protein compare
PS417_04305 -1.5 -2.0 aspartate ammonia-lyase compare
PS417_07165 -1.5 -2.5 dihydrodipicolinate synthase compare
PS417_12290 -1.5 -5.4 sulfite reductase compare
PS417_23110 -1.4 -6.2 2-isopropylmalate synthase compare
PS417_17610 -1.4 -2.4 AsnC family transcriptional regulator compare
PS417_18585 -1.4 -4.4 3-isopropylmalate dehydrogenase compare
PS417_25710 -1.4 -1.8 indole-3-glycerol-phosphate synthase compare
PS417_16465 -1.4 -8.2 sirohydrochlorin ferrochelatase compare
PS417_26900 -1.4 -1.5 L-cystine transporter tcyP compare
PS417_23950 -1.4 -1.6 polynucleotide phosphorylase/polyadenylase compare
PS417_06680 -1.3 -8.0 nuclease PIN compare
PS417_02555 -1.3 -10.0 exoribonuclease R compare
PS417_08230 -1.3 -2.0 lipopolysaccharide biosynthesis protein RfbH compare
PS417_06645 -1.3 -6.9 RNA polymerase-associated protein RapA compare
PS417_19605 -1.3 -1.9 hypothetical protein compare
PS417_23315 -1.3 -1.6 transcriptional regulator compare
PS417_18690 -1.3 -2.9 aromatic amino acid aminotransferase compare
PS417_22580 -1.2 -4.2 membrane protein compare
PS417_02560 -1.2 -2.5 23S rRNA methyltransferase compare
PS417_09235 -1.2 -1.6 molecular chaperone compare
PS417_26745 -1.2 -5.8 methionine biosynthesis protein MetW compare
PS417_08245 -1.2 -1.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_18595 -1.2 -2.8 3-isopropylmalate dehydratase compare
PS417_19600 -1.2 -1.5 exonuclease compare
PS417_18530 -1.2 -3.7 O-succinylhomoserine sulfhydrylase compare
PS417_19645 -1.2 -1.7 chemotaxis protein compare
PS417_19675 -1.2 -4.8 chemotaxis protein CheY compare
PS417_04380 -1.1 -1.9 ABC transporter permease compare
PS417_25725 -1.1 -6.5 anthranilate synthase component I compare
PS417_28050 -1.1 -3.3 hypothetical protein compare
PS417_05695 -1.1 -4.2 transcriptional regulator compare
PS417_13510 -1.1 -1.4 polyketide cyclase compare
PS417_08410 -1.1 -2.4 hypothetical protein compare
PS417_04650 -1.0 -1.9 D-alanine--D-alanine ligase compare
PS417_21000 -1.0 -1.9 CrfX protein compare
PS417_25720 -1.0 -2.6 anthranilate synthase component II compare
PS417_08155 -1.0 -1.9 integration host factor subunit beta compare
PS417_26695 -1.0 -0.7 uracil phosphoribosyltransferase compare
PS417_16320 -1.0 -2.1 protein tyrosine phosphatase compare
PS417_14975 -1.0 -2.0 tRNA hydroxylase compare
PS417_03560 -1.0 -2.0 GTP-binding protein compare
PS417_08540 -1.0 -3.0 RNA helicase compare
PS417_10220 -1.0 -4.2 hypothetical protein compare
PS417_08200 -1.0 -2.5 hypothetical protein compare
PS417_16715 -0.9 -1.9 DoxX family protein compare
PS417_12160 -0.9 -1.9 Fis family transcriptional regulator compare
PS417_08135 -0.9 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01115 -0.9 -1.4 serine acetyltransferase compare
PS417_09865 -0.9 -1.6 hypothetical protein compare
PS417_23580 -0.9 -1.6 peptidylprolyl isomerase compare
PS417_05985 -0.9 -2.1 chemotaxis protein CheY compare
PS417_04270 -0.9 -5.5 ribonuclease G compare
PS417_14295 -0.9 -1.8 AraC family transcriptional regulator compare
PS417_06540 -0.9 -1.5 membrane protein compare
PS417_21125 -0.9 -3.6 phosphoadenosine phosphosulfate reductase compare
PS417_26990 -0.9 -1.3 RNA pyrophosphohydrolase compare
PS417_18860 -0.9 -3.3 transcriptional regulator compare
PS417_20030 -0.9 -2.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_03310 -0.9 -4.5 carbonate dehydratase compare
PS417_19650 -0.9 -2.5 chemotaxis protein CheW compare
PS417_10015 -0.9 -1.3 hypothetical protein compare
PS417_02975 -0.9 -2.4 3-dehydroquinate dehydratase compare
PS417_18780 -0.9 -1.0 flavin reductase compare
PS417_16000 -0.9 -1.8 chemotaxis protein CheY compare
PS417_07615 -0.9 -3.0 TetR family transcriptional regulator compare
PS417_23360 -0.9 -1.1 hypothetical protein compare
PS417_08205 -0.9 -3.1 acetyltransferase compare
PS417_20635 -0.9 -1.1 ABC transporter ATP-binding protein compare
PS417_00190 -0.9 -2.8 LysR family transcriptional regulator compare
PS417_10210 -0.9 -3.7 hypothetical protein compare
PS417_08190 -0.9 -6.7 membrane protein compare
PS417_01620 -0.9 -1.6 preprotein translocase subunit SecB compare
PS417_23900 -0.8 -5.1 poly(A) polymerase compare
PS417_18370 -0.8 -2.2 hypothetical protein compare
PS417_23205 -0.8 -2.1 transcriptional regulator compare
PS417_12935 -0.8 -1.2 RNA polymerase sigma factor compare
PS417_26985 -0.8 -3.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_21510 -0.8 -1.8 histidine kinase compare
PS417_11400 -0.8 -1.6 phosphoglycerate mutase compare
PS417_19805 -0.8 -3.0 flagellar M-ring protein FliF compare
PS417_15710 -0.8 -2.2 nitrate reductase compare
PS417_06375 -0.8 -0.7 deoxycytidine triphosphate deaminase compare
PS417_27585 -0.8 -2.1 diaminopimelate epimerase compare
PS417_06165 -0.8 -2.3 thiamine biosynthesis protein ThiF compare
PS417_08435 -0.8 -1.5 pilus assembly protein PilZ compare
PS417_12870 -0.8 -1.4 enoyl-CoA hydratase compare
PS417_06895 -0.8 -3.1 DNA-binding protein compare
PS417_16555 -0.8 -1.3 cupin compare
PS417_22520 -0.8 -2.4 histidine kinase compare
PS417_03260 -0.8 -1.4 5S ribosomal RNA compare
PS417_08590 -0.8 -1.9 hypothetical protein compare
PS417_20950 -0.8 -1.8 hypothetical protein compare
PS417_19360 -0.8 -1.0 hypothetical protein compare
PS417_20080 -0.8 -2.5 peptidase P60 compare
PS417_26335 -0.8 -2.0 BetI family transcriptional regulator compare
PS417_05155 -0.8 -2.6 DNA polymerase III subunit chi compare
PS417_24085 -0.8 -2.3 protein RnfH compare
PS417_23380 -0.8 -1.7 cytochrome o ubiquinol oxidase subunit III compare
PS417_25650 -0.8 -3.9 anhydro-N-acetylmuramic acid kinase compare
PS417_08225 -0.8 -3.1 acetolactate synthase compare
PS417_02630 -0.8 -2.7 NAD synthetase compare
PS417_21705 -0.7 -3.0 arginine N-succinyltransferase compare
PS417_12840 -0.7 -2.1 TetR family transcriptional regulator compare
PS417_22695 -0.7 -4.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_20855 -0.7 -0.9 hypothetical protein compare
PS417_05790 -0.7 -2.6 hypothetical protein compare
PS417_16775 -0.7 -1.9 branched-chain amino acid ABC transporter ATP-binding protein compare
PS417_10245 -0.7 -1.2 hypothetical protein compare
PS417_14755 -0.7 -1.5 UV damage repair endonuclease UvdE compare
PS417_03145 -0.7 -2.3 acetyl-CoA acetyltransferase compare
PS417_20875 -0.7 -2.1 chromosome segregation protein SMC compare
PS417_27800 -0.7 -2.5 exodeoxyribonuclease III compare
PS417_11480 -0.7 -2.2 hypothetical protein compare
PS417_22350 -0.7 -1.1 Fis family transcriptional regulator compare
PS417_20665 -0.7 -3.8 hypothetical protein compare
PS417_24785 -0.7 -1.7 nucleoside-diphosphate sugar epimerase compare
PS417_17505 -0.7 -2.8 LuxR family transcriptional regulator compare
PS417_06600 -0.7 -0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_05555 -0.7 -2.0 amino acid ABC transporter permease compare
PS417_09210 -0.7 -1.1 TetR family transcriptional regulator compare
PS417_21140 -0.7 -1.9 LysR family transcriptional regulator compare
PS417_16560 -0.7 -1.9 GNAT family acetyltransferase compare
PS417_02210 -0.7 -3.4 diguanylate cyclase compare
PS417_26725 -0.7 -2.5 hypothetical protein compare
PS417_19955 -0.7 -1.2 hypothetical protein compare
PS417_18450 -0.7 -3.4 hydrolase compare
PS417_05160 -0.7 -1.0 DNA polymerase III subunit chi compare
PS417_22450 -0.7 -1.1 ATP-dependent DNA helicase RuvA compare
PS417_08220 -0.7 -0.9 epimerase compare
PS417_17215 -0.7 -2.7 peptidylprolyl isomerase compare
PS417_13955 -0.7 -3.6 protein QbdB compare
PS417_06200 -0.7 -2.9 protein-PII uridylyltransferase compare
PS417_05815 -0.7 -3.0 recombinase RecA compare
PS417_24345 -0.7 -2.5 ubiquinol oxidase subunit II compare
PS417_22145 -0.7 -4.0 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) compare
PS417_00085 -0.7 -2.2 16S rRNA methyltransferase compare
PS417_03970 -0.7 -1.3 1-phosphofructokinase compare
PS417_21625 -0.7 -1.0 DNA-binding protein compare
PS417_23910 -0.6 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_11075 -0.6 -1.4 hydroxypyruvate isomerase compare
PS417_26685 -0.6 -1.5 hypothetical protein compare
PS417_11175 -0.6 -2.0 AraC family transcriptional regulator compare
PS417_10320 -0.6 -1.5 hypothetical protein compare
PS417_04390 -0.6 -4.0 toluene tolerance protein compare
PS417_22810 -0.6 -1.6 DNA base-flipping protein YbaZ compare
PS417_04410 -0.6 -0.8 hypothetical protein compare
PS417_05830 -0.6 -1.2 hypothetical protein compare
PS417_06885 -0.6 -2.4 dihydrodipicolinate synthase compare
PS417_18300 -0.6 -2.5 transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in carbon source experiments

For carbon source MS_media across organisms