Experiment set7IT029 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_glucose with MS_media 1x

200 most detrimental genes:

  gene name fitness t score description  
PS417_26850 +1.6 1.9 twin-arginine translocation pathway signal protein compare
PS417_05560 +1.2 3.8 ABC transporter compare
PS417_19825 +1.1 7.5 ATPase AAA compare
PS417_15875 +1.1 2.2 LuxR family transcriptional regulator compare
PS417_18360 +1.0 1.6 hypothetical protein compare
PS417_19620 +1.0 2.5 hypothetical protein compare
PS417_02705 +1.0 2.9 urease accessory protein UreF compare
PS417_09470 +1.0 1.4 hypothetical protein compare
PS417_00845 +0.9 1.7 transcriptional regulator compare
PS417_15030 +0.9 1.7 short-chain dehydrogenase compare
PS417_00455 +0.9 2.2 hypothetical protein compare
PS417_05710 +0.9 2.3 hypothetical protein compare
PS417_19885 +0.9 2.2 flagellar basal body rod protein FlgG compare
PS417_16295 +0.9 3.8 hypothetical protein compare
PS417_15400 +0.9 1.2 hypothetical protein compare
PS417_14325 +0.8 2.0 AraC family transcriptional regulator compare
PS417_13620 +0.8 2.1 thermostable hemolysin compare
PS417_19730 +0.8 2.2 flagellar biosynthesis protein FliR compare
PS417_04220 +0.8 1.5 4-carboxymuconolactone decarboxylase compare
PS417_02160 +0.8 1.2 hypothetical protein compare
PS417_10575 +0.8 2.2 DNA alkylation repair protein compare
PS417_17320 +0.8 2.6 phenylhydantoinase compare
PS417_14540 +0.8 1.3 cytochrome C oxidase subunit III compare
PS417_08150 +0.8 2.1 hypothetical protein compare
PS417_21425 +0.8 1.8 4-amino-4-deoxychorismate lyase compare
PS417_01400 +0.7 1.2 hypothetical protein compare
PS417_13445 +0.7 1.6 D-aminopeptidase compare
PS417_15495 +0.7 2.4 FAD-dependent oxidoreductase compare
PS417_19880 +0.7 3.3 flagellar basal body L-ring protein compare
PS417_21780 +0.7 2.1 argininosuccinate lyase compare
PS417_07195 +0.7 2.6 hypothetical protein compare
PS417_23080 +0.7 2.5 sugar ABC transporter ATPase compare
PS417_07845 +0.7 0.9 transcriptional regulator compare
PS417_17440 +0.7 1.9 beta-lactamase compare
PS417_11945 +0.7 1.4 hypothetical protein compare
PS417_19745 +0.7 3.0 flagellar assembly protein FliO compare
PS417_08365 +0.7 0.9 hypothetical protein compare
PS417_04530 +0.7 1.8 glycerate dehydrogenase compare
PS417_17795 +0.7 2.0 ABC transporter permease compare
PS417_19735 +0.7 3.5 flagellar biosynthesis protein FliQ compare
PS417_07870 +0.7 1.8 hypothetical protein compare
PS417_05140 +0.7 1.8 dipicolinate synthase compare
PS417_02340 +0.7 2.8 LysR family transcriptional regulator compare
PS417_19790 +0.7 2.2 ATP synthase compare
PS417_02385 +0.7 1.3 esterase compare
PS417_26605 +0.7 1.3 malonate decarboxylase subunit beta compare
PS417_19785 +0.7 3.0 flagellar biogenesis protein compare
PS417_19765 +0.7 3.5 flagellar hook-length control protein compare
PS417_16255 +0.7 1.3 RNA polymerase sigma factor compare
PS417_18620 +0.7 2.8 hypothetical protein compare
PS417_17755 +0.7 2.0 hypothetical protein compare
PS417_14780 +0.6 2.0 GNAT family acetyltraansferase compare
PS417_28170 +0.6 3.4 transcriptional regulator compare
PS417_19795 +0.6 2.8 flagellar assembly protein FliH compare
PS417_21555 +0.6 3.7 flagellar hook protein FlgE compare
PS417_28450 +0.6 1.5 XRE family transcriptional regulator compare
PS417_05820 +0.6 1.9 recombinase RecX compare
PS417_12355 +0.6 1.0 magnesium chelatase compare
PS417_14655 +0.6 0.9 lysine transporter LysE compare
PS417_20140 +0.6 1.6 nucleoprotein/polynucleotide-associated enzyme compare
PS417_03380 +0.6 1.2 hypothetical protein compare
PS417_05010 +0.6 1.3 IclR family transcriptional regulator compare
PS417_21655 +0.6 0.8 aspartate kinase compare
PS417_26175 +0.6 0.9 sarcosine oxidase subunit gamma compare
PS417_19830 +0.6 1.4 flagellar assembly protein FliT compare
PS417_02165 +0.6 1.8 ZapA compare
PS417_04050 +0.6 1.2 peptide ABC transporter ATP-binding protein compare
PS417_11875 +0.6 2.4 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare
PS417_03190 +0.6 1.5 antibiotic biosynthesis monooxygenase compare
PS417_26240 +0.6 1.5 N-methylproline demethylase compare
PS417_06710 +0.6 0.9 beta-ketoadipyl CoA thiolase compare
PS417_00350 +0.6 2.2 methionine ABC transporter substrate-binding protein compare
PS417_07840 +0.6 1.2 hypothetical protein compare
PS417_09800 +0.6 1.3 cytosine deaminase compare
PS417_11455 +0.6 1.3 hypothetical protein compare
PS417_06620 +0.6 1.6 hypothetical protein compare
PS417_10405 +0.6 0.7 filamentous hemagglutinin compare
PS417_27180 +0.6 1.9 peroxidase compare
PS417_09930 +0.6 0.8 hypothetical protein compare
PS417_09680 +0.6 1.3 hydrolase compare
PS417_22170 +0.6 1.8 acetyltransferase compare
PS417_24650 +0.6 1.0 membrane protein compare
PS417_20515 +0.6 1.8 FMN-dependent NADH-azoreductase compare
PS417_01015 +0.5 3.1 polar amino acid ABC transporter permease compare
PS417_21585 +0.5 3.0 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_17405 +0.5 0.9 AraC family transcriptional regulator compare
PS417_26805 +0.5 0.6 cell division protein FtsE compare
PS417_18235 +0.5 1.5 nitrile hydratase compare
PS417_01465 +0.5 1.8 hypothetical protein compare
PS417_27815 +0.5 0.9 hypothetical protein compare
PS417_13165 +0.5 0.8 peroxidase compare
PS417_13545 +0.5 1.7 arginine aminotransferase compare
PS417_16870 +0.5 1.4 short-chain dehydrogenase compare
PS417_07820 +0.5 0.8 transposase compare
PS417_24370 +0.5 0.6 (2Fe-2S)-binding protein compare
PS417_21565 +0.5 1.4 flagellar basal body rod protein FlgC compare
PS417_13660 +0.5 1.2 AsnC family transcriptional regulator compare
PS417_26400 +0.5 1.4 metal-dependent hydrolase compare
PS417_26260 +0.5 0.9 hypothetical protein compare
PS417_26275 +0.5 1.1 glycine/betaine ABC transporter substrate-binding protein compare
PS417_21570 +0.5 3.0 flagellar basal body rod protein FlgB compare
PS417_19710 +0.5 3.2 flagellar biosynthesis protein FlhA compare
PS417_23170 +0.5 1.3 FeS assembly protein IscX compare
PS417_05055 +0.5 1.5 hypothetical protein compare
PS417_15820 +0.5 1.6 universal stress protein UspA compare
PS417_09335 +0.5 1.3 HAD family hydrolase compare
PS417_24535 +0.5 1.2 membrane protein compare
PS417_10910 +0.5 1.4 FAD-dependent oxidoreductase compare
PS417_25030 +0.5 1.6 hypothetical protein compare
PS417_16035 +0.5 2.1 ABC transporter substrate-binding protein compare
PS417_13175 +0.5 1.2 iron transporter compare
PS417_27910 +0.5 2.0 PppA compare
PS417_18980 +0.5 1.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_07990 +0.5 1.8 endoribonuclease L-PSP compare
PS417_19975 +0.5 1.3 hypothetical protein compare
PS417_08680 +0.5 1.7 flagellar biosynthesis protein FlhB compare
PS417_13305 +0.5 0.6 hypothetical protein compare
PS417_05405 +0.5 2.1 L-alanine and D-alanine permease (from data) compare
PS417_09925 +0.5 2.5 hypothetical protein compare
PS417_19425 +0.5 0.6 allantoicase compare
PS417_16815 +0.5 0.9 acyl-CoA dehydrogenase compare
PS417_10515 +0.5 1.9 acetyl-CoA acetyltransferase compare
PS417_15895 +0.5 1.7 iron dicitrate transport regulator FecR compare
PS417_12120 +0.5 1.5 IclR family transcriptional regulator compare
PS417_15210 +0.5 1.7 protein activator of alkane oxidation PraB compare
PS417_02155 +0.5 1.5 chemotaxis protein compare
PS417_24115 +0.5 1.2 hypothetical protein compare
PS417_06635 +0.5 1.0 ferredoxin compare
PS417_12490 +0.5 0.9 autotransporter adhesin compare
PS417_26220 +0.5 1.6 Rieske (2Fe-2S) protein compare
PS417_07455 +0.5 1.0 glutamine amidotransferase compare
PS417_11445 +0.5 1.8 enoyl-CoA hydratase compare
PS417_17675 +0.5 0.9 ABC transporter compare
PS417_01635 +0.5 1.8 nitrogen regulation protein NR(I) compare
PS417_07255 +0.5 2.1 Deoxyribonolactonase (from data) compare
PS417_04765 +0.5 2.2 membrane protein compare
PS417_02980 +0.5 0.8 chemotaxis protein compare
PS417_11930 +0.5 2.3 hypothetical protein compare
PS417_25165 +0.5 1.7 chitin-binding protein compare
PS417_27085 +0.5 1.0 AraC family transcriptional regulator compare
PS417_04915 +0.5 0.9 glutamine ABC transporter ATP-binding protein compare
PS417_05650 +0.5 1.2 leucyl-tRNA synthetase compare
PS417_14880 +0.5 1.4 thioesterase compare
PS417_01275 +0.5 2.7 LysR family transcriptional regulator compare
PS417_02370 +0.5 0.6 ADP-ribose pyrophosphatase compare
PS417_08785 +0.5 2.4 urea transporter compare
PS417_06125 +0.5 0.9 hypothetical protein compare
PS417_18090 +0.5 1.7 iron ABC transporter compare
PS417_12760 +0.5 2.1 histidine kinase compare
PS417_08830 +0.5 1.9 membrane protein compare
PS417_06945 +0.5 0.7 membrane protein compare
PS417_18355 +0.4 1.9 DNA-binding protein compare
PS417_17340 +0.4 2.1 GNAT family acetyltransferase compare
PS417_12400 +0.4 1.4 oxidoreductase compare
PS417_15475 +0.4 1.3 IclR family transcriptional regulator compare
PS417_26420 +0.4 0.5 hypothetical protein compare
PS417_14675 +0.4 2.1 aldehyde dehydrogenase compare
PS417_22630 +0.4 0.9 hypothetical protein compare
PS417_12910 +0.4 0.8 alanine racemase compare
PS417_14645 +0.4 2.2 hypothetical protein compare
PS417_16165 +0.4 1.8 ABC transporter substrate-binding protein compare
PS417_18850 +0.4 1.1 hypothetical protein compare
PS417_16195 +0.4 0.7 AraC family transcriptional regulator compare
PS417_02495 +0.4 1.9 GTPase HflX compare
PS417_03800 +0.4 1.2 pilus assembly protein compare
PS417_19840 +0.4 2.8 flagellar cap protein FliD compare
PS417_17835 +0.4 1.4 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
PS417_17800 +0.4 2.6 microcin B17-processing protein McbD compare
PS417_10995 +0.4 1.1 GntR family transcriptional regulator compare
PS417_02030 +0.4 2.1 3-oxoacyl-ACP synthase compare
PS417_14260 +0.4 0.9 phosphate ABC transporter permease compare
PS417_11280 +0.4 1.1 HxcX atypical pseudopilin compare
PS417_03465 +0.4 0.5 type III secretion protein compare
PS417_09575 +0.4 0.9 glutathione S-transferase compare
PS417_08940 +0.4 1.7 thioesterase compare
PS417_26305 +0.4 1.1 AraC family transcriptional regulator compare
PS417_16510 +0.4 1.3 Clp protease ClpX compare
PS417_03525 +0.4 0.9 hypothetical protein compare
PS417_23045 +0.4 1.2 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
PS417_01180 +0.4 2.3 ribosomal protein S6 modification protein compare
PS417_11395 +0.4 1.8 hypothetical protein compare
PS417_06900 +0.4 2.6 hypothetical protein compare
PS417_11900 +0.4 2.1 conjugal transfer protein TraR compare
PS417_06455 +0.4 1.2 Fe(II)-dependent oxygenase compare
PS417_16225 +0.4 2.3 sugar ABC transporter permease compare
PS417_04945 +0.4 2.0 fimbrial chaperone protein compare
PS417_15920 +0.4 1.4 TetR family transcriptional regulator compare
PS417_24030 +0.4 0.8 MFS transporter compare
PS417_16680 +0.4 1.3 MFS transporter compare
PS417_13450 +0.4 2.5 serine 3-dehydrogenase compare
PS417_13290 +0.4 2.0 AraC family transcriptional regulator compare
PS417_26120 +0.4 0.8 hypothetical protein compare
PS417_07385 +0.4 2.2 2-hydroxyacid dehydrogenase compare
PS417_22745 +0.4 1.9 hypothetical protein compare
PS417_16860 +0.4 0.9 diadenosine tetraphosphate hydrolase compare
PS417_19870 +0.4 1.4 flagellar rod assembly protein FlgJ compare
PS417_21360 +0.4 0.7 termination factor Rho compare
PS417_19960 +0.4 1.8 membrane protein compare
PS417_25280 +0.4 1.6 methyltransferase compare
PS417_12175 +0.4 1.1 peptide ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in carbon source experiments

For carbon source MS_media across organisms