Experiment set7IT027 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x

200 most important genes:

  gene name fitness t score description  
PS417_22690 -5.1 -4.9 phosphogluconate dehydratase compare
PS417_20985 -4.8 -6.6 porin compare
PS417_24155 -4.6 -5.3 ATP-binding protein compare
PS417_23995 -4.4 -1.5 preprotein translocase subunit SecG compare
PS417_24745 -4.3 -7.5 gamma-glutamyl phosphate reductase compare
PS417_27795 -4.1 -1.5 orotate phosphoribosyltransferase compare
PS417_01575 -4.0 -6.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02510 -4.0 -10.1 ATP phosphoribosyltransferase regulatory subunit compare
PS417_27195 -3.9 -1.9 N-acetylglutamate synthase compare
PS417_04415 -3.9 -10.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_27040 -3.9 -3.9 3-phosphoglycerate dehydrogenase compare
PS417_23805 -3.8 -7.9 acetolactate synthase 3 regulatory subunit compare
PS417_23545 -3.8 -4.1 gamma-glutamyl kinase compare
PS417_01565 -3.7 -8.8 imidazole glycerol phosphate synthase compare
PS417_04420 -3.7 -11.4 histidinol dehydrogenase compare
PS417_01855 -3.7 -4.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_02005 -3.7 -14.2 glutamate synthase compare
PS417_01850 -3.7 -8.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_02000 -3.6 -16.3 glutamate synthase compare
PS417_00185 -3.6 -5.8 tryptophan synthase subunit beta compare
PS417_27435 -3.5 -7.9 polyphosphate kinase compare
PS417_05595 -3.4 -6.8 ornithine carbamoyltransferase compare
PS417_25710 -3.3 -1.6 indole-3-glycerol-phosphate synthase compare
PS417_23810 -3.3 -16.3 acetolactate synthase 3 catalytic subunit compare
PS417_23800 -3.2 -14.7 ketol-acid reductoisomerase compare
PS417_02415 -3.1 -5.9 phosphoserine phosphatase compare
PS417_01605 -3.1 -2.3 phosphoglycerate mutase compare
PS417_25715 -3.1 -6.9 anthranilate phosphoribosyltransferase compare
PS417_08125 -3.1 -2.1 prephenate dehydratase compare
PS417_20160 -3.1 -2.9 cysteine synthase compare
PS417_16465 -3.0 -10.5 sirohydrochlorin ferrochelatase compare
PS417_01560 -3.0 -3.5 imidazoleglycerol-phosphate dehydratase compare
PS417_01580 -2.9 -1.7 imidazole glycerol phosphate synthase compare
PS417_12855 -2.9 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_20125 -2.8 -5.1 phosphoribosylglycinamide formyltransferase compare
PS417_26995 -2.8 -11.2 phosphoserine phosphatase compare
PS417_28220 -2.8 -3.5 LysR family transcriptional regulator compare
PS417_26695 -2.8 -1.2 uracil phosphoribosyltransferase compare
PS417_26745 -2.7 -7.1 methionine biosynthesis protein MetW compare
PS417_18560 -2.7 -9.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_26730 -2.7 -1.3 pyrroline-5-carboxylate reductase compare
PS417_00180 -2.7 -4.9 tryptophan synthase subunit alpha compare
PS417_18600 -2.7 -5.4 isopropylmalate isomerase compare
PS417_12290 -2.6 -8.2 sulfite reductase compare
PS417_27835 -2.6 -9.6 endoribonuclease compare
PS417_26890 -2.6 -6.5 dihydroxy-acid dehydratase compare
PS417_06375 -2.5 -1.2 deoxycytidine triphosphate deaminase compare
PS417_01570 -2.5 -2.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_18585 -2.4 -6.9 3-isopropylmalate dehydrogenase compare
PS417_07170 -2.4 -3.8 hypothetical protein compare
PS417_23770 -2.4 -2.8 exodeoxyribonuclease V subunit alpha compare
PS417_22520 -2.3 -4.0 histidine kinase compare
PS417_18530 -2.3 -4.6 O-succinylhomoserine sulfhydrylase compare
PS417_26740 -2.3 -7.9 homoserine acetyltransferase compare
PS417_18595 -2.3 -5.8 3-isopropylmalate dehydratase compare
PS417_27870 -1.9 -4.7 ATP-dependent DNA helicase RecG compare
PS417_25725 -1.9 -9.2 anthranilate synthase component I compare
PS417_23110 -1.9 -7.5 2-isopropylmalate synthase compare
PS417_26990 -1.9 -2.4 RNA pyrophosphohydrolase compare
PS417_06680 -1.9 -9.6 nuclease PIN compare
PS417_22620 -1.8 -4.3 pyruvate kinase compare
PS417_22450 -1.8 -2.6 ATP-dependent DNA helicase RuvA compare
PS417_23950 -1.8 -2.2 polynucleotide phosphorylase/polyadenylase compare
PS417_25720 -1.8 -4.1 anthranilate synthase component II compare
PS417_07165 -1.7 -3.4 dihydrodipicolinate synthase compare
PS417_23915 -1.6 -6.6 pantoate--beta-alanine ligase compare
PS417_18690 -1.6 -5.1 aromatic amino acid aminotransferase compare
PS417_02720 -1.6 -1.4 TetR family transcriptional regulator compare
PS417_02555 -1.6 -12.1 exoribonuclease R compare
PS417_06645 -1.6 -9.1 RNA polymerase-associated protein RapA compare
PS417_03310 -1.6 -5.6 carbonate dehydratase compare
PS417_08155 -1.5 -1.7 integration host factor subunit beta compare
PS417_08580 -1.5 -5.4 histidine kinase compare
PS417_09235 -1.5 -1.6 molecular chaperone compare
PS417_13510 -1.4 -1.6 polyketide cyclase compare
PS417_17610 -1.4 -2.6 AsnC family transcriptional regulator compare
PS417_28230 -1.4 -2.6 transcriptional regulator compare
PS417_15215 -1.4 -2.2 protein activator of alkane oxidation PraA compare
PS417_21000 -1.4 -2.6 CrfX protein compare
PS417_05695 -1.4 -7.0 transcriptional regulator compare
PS417_08220 -1.3 -1.3 epimerase compare
PS417_12555 -1.3 -4.6 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_07595 -1.3 -3.3 PasA protein compare
PS417_18540 -1.3 -3.1 colicin V production CvpA compare
PS417_28070 -1.2 -5.3 phosphate ABC transporter ATP-binding protein compare
PS417_03260 -1.2 -2.0 5S ribosomal RNA compare
PS417_00195 -1.2 -3.0 hypothetical protein compare
PS417_21125 -1.2 -4.9 phosphoadenosine phosphosulfate reductase compare
PS417_23910 -1.2 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_06145 -1.2 -1.3 hypothetical protein compare
PS417_08135 -1.1 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23375 -1.1 -2.1 cytochrome C oxidase compare
PS417_04585 -1.1 -1.9 hypothetical protein compare
PS417_23380 -1.1 -2.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_16715 -1.1 -2.0 DoxX family protein compare
PS417_04305 -1.1 -1.8 aspartate ammonia-lyase compare
PS417_08230 -1.1 -2.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_10025 -1.1 -1.6 bacteriophage lambda NinG family protein compare
PS417_06685 -1.0 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_03145 -1.0 -2.4 acetyl-CoA acetyltransferase compare
PS417_04270 -1.0 -6.6 ribonuclease G compare
PS417_07615 -1.0 -4.3 TetR family transcriptional regulator compare
PS417_21705 -1.0 -4.5 arginine N-succinyltransferase compare
PS417_06600 -1.0 -1.0 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_02560 -1.0 -1.5 23S rRNA methyltransferase compare
PS417_17240 -1.0 -3.8 trigger factor compare
PS417_14710 -1.0 -1.5 isochorismatase compare
PS417_04410 -1.0 -1.5 hypothetical protein compare
PS417_28080 -1.0 -6.6 phosphate ABC transporter permease compare
PS417_19275 -1.0 -1.5 hypothetical protein compare
PS417_24675 -1.0 -2.2 lipoyl synthase compare
PS417_22990 -0.9 -1.2 iron dicitrate transport regulator FecR compare
PS417_08740 -0.9 -2.2 ribose-phosphate pyrophosphokinase compare
PS417_08200 -0.9 -3.3 hypothetical protein compare
PS417_18495 -0.9 -1.6 hypothetical protein compare
PS417_20340 -0.9 -1.6 hypothetical protein compare
PS417_16400 -0.9 -2.3 NAD(P)H-quinone oxidoreductase compare
PS417_08245 -0.9 -1.3 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_15285 -0.9 -0.9 type VI secretion protein compare
PS417_27585 -0.9 -2.8 diaminopimelate epimerase compare
PS417_01145 -0.9 -0.9 taurine transporter ATP-binding subunit compare
PS417_08435 -0.9 -1.2 pilus assembly protein PilZ compare
PS417_06200 -0.9 -3.5 protein-PII uridylyltransferase compare
PS417_08185 -0.9 -3.2 glycosyl transferase compare
PS417_13195 -0.9 -2.2 RND transporter MFP subunit compare
PS417_10405 -0.9 -0.7 filamentous hemagglutinin compare
PS417_04220 -0.9 -1.0 4-carboxymuconolactone decarboxylase compare
PS417_18590 -0.9 -2.0 SAM-dependent methyltransferase compare
PS417_08225 -0.9 -3.0 acetolactate synthase compare
PS417_11380 -0.9 -1.4 peptidylprolyl isomerase compare
PS417_23900 -0.9 -4.3 poly(A) polymerase compare
PS417_09865 -0.9 -1.7 hypothetical protein compare
PS417_08195 -0.9 -5.6 hypothetical protein compare
PS417_18310 -0.9 -1.8 hypothetical protein compare
PS417_27865 -0.9 -1.7 LysR family transcriptional regulator compare
PS417_14805 -0.8 -1.2 AraC family transcriptional regulator compare
PS417_05785 -0.8 -3.2 tail protein compare
PS417_22445 -0.8 -2.6 ATP-dependent DNA helicase RuvB compare
PS417_08190 -0.8 -6.0 membrane protein compare
PS417_19065 -0.8 -0.8 monooxygenase compare
PS417_04380 -0.8 -1.6 ABC transporter permease compare
PS417_08045 -0.8 -1.1 uracil permease compare
PS417_02630 -0.8 -2.0 NAD synthetase compare
PS417_26280 -0.8 -2.4 NADPH:quinone reductase compare
PS417_19955 -0.8 -1.4 hypothetical protein compare
PS417_17935 -0.8 -2.4 endoribonuclease L-PSP compare
PS417_08730 -0.8 -1.0 cytochrome C compare
PS417_20635 -0.8 -0.9 ABC transporter ATP-binding protein compare
PS417_00535 -0.8 -1.6 Holliday junction resolvase compare
PS417_03560 -0.8 -1.8 GTP-binding protein compare
PS417_08825 -0.8 -2.2 TetR family transcriptional regulator compare
PS417_22695 -0.8 -4.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_17780 -0.8 -0.6 Ais protein compare
PS417_25155 -0.8 -1.4 hypothetical protein compare
PS417_19500 -0.8 -3.0 antibiotic synthesis protein MbtH compare
PS417_14235 -0.8 -1.8 hypothetical protein compare
PS417_11175 -0.8 -1.1 AraC family transcriptional regulator compare
PS417_18860 -0.8 -2.8 transcriptional regulator compare
PS417_00900 -0.8 -1.9 4-aminobutyrate aminotransferase compare
PS417_02105 -0.7 -1.9 acyl carrier protein compare
PS417_23095 -0.7 -0.8 exodeoxyribonuclease compare
PS417_22840 -0.7 -1.0 tRNA-Met compare
PS417_11615 -0.7 -1.3 urea ABC transporter ATP-binding protein compare
PS417_17070 -0.7 -1.7 RNA polymerase subunit sigma-24 compare
PS417_04650 -0.7 -1.1 D-alanine--D-alanine ligase compare
PS417_01685 -0.7 -1.6 membrane protein compare
PS417_08540 -0.7 -2.1 RNA helicase compare
PS417_18105 -0.7 -0.9 iron-dicitrate transporter substrate-binding subunit compare
PS417_06945 -0.7 -0.8 membrane protein compare
PS417_27445 -0.7 -5.2 membrane protein compare
PS417_01285 -0.7 -1.6 haloacid dehalogenase compare
PS417_12700 -0.7 -1.5 ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data) compare
PS417_08410 -0.7 -1.1 hypothetical protein compare
PS417_05160 -0.7 -1.0 DNA polymerase III subunit chi compare
PS417_12595 -0.7 -0.9 transcriptional regulator compare
PS417_17565 -0.7 -1.7 branched-chain amino acid aminotransferase compare
PS417_13870 -0.7 -1.8 hypothetical protein compare
PS417_08990 -0.7 -2.0 ABC transporter substrate-binding protein compare
PS417_03995 -0.7 -2.3 Fe(II)-dependent oxygenase compare
PS417_19800 -0.7 -1.6 flagellar motor switch protein FliG compare
PS417_27425 -0.7 -4.2 exopolyphosphatase compare
PS417_23205 -0.7 -3.6 transcriptional regulator compare
PS417_27180 -0.7 -1.1 peroxidase compare
PS417_22700 -0.7 -1.7 RNA polymerase subunit sigma-24 compare
PS417_13010 -0.7 -1.4 alpha/beta hydrolase compare
PS417_04375 -0.7 -1.3 ABC transporter ATP-binding protein compare
PS417_06540 -0.7 -1.1 membrane protein compare
PS417_26985 -0.7 -3.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_05790 -0.7 -2.0 hypothetical protein compare
PS417_15325 -0.7 -0.9 type VI secretion protein compare
PS417_04275 -0.7 -4.9 hypothetical protein compare
PS417_14935 -0.7 -1.6 transposase compare
PS417_14280 -0.7 -1.8 hypothetical protein compare
PS417_27635 -0.7 -2.4 magnesium chelatase compare
PS417_10015 -0.7 -0.9 hypothetical protein compare
PS417_24775 -0.6 -2.3 dehydratase compare
PS417_23390 -0.6 -2.8 ubiquinol oxidase subunit II compare
PS417_10220 -0.6 -2.1 hypothetical protein compare
PS417_03045 -0.6 -1.4 hypothetical protein compare
PS417_21630 -0.6 -1.3 magnesium transporter compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms