Experiment set7IT024 for Pseudomonas simiae WCS417

Compare to:

LB with Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

200 most important genes:

  gene name fitness t score description  
PS417_24155 -6.2 -4.3 ATP-binding protein compare
PS417_08125 -3.3 -2.0 prephenate dehydratase compare
PS417_20985 -2.7 -3.8 porin compare
PS417_23770 -2.1 -2.3 exodeoxyribonuclease V subunit alpha compare
PS417_23375 -2.0 -2.3 cytochrome C oxidase compare
PS417_23950 -2.0 -2.8 polynucleotide phosphorylase/polyadenylase compare
PS417_20855 -1.8 -1.7 hypothetical protein compare
PS417_04380 -1.8 -2.3 ABC transporter permease compare
PS417_27870 -1.8 -4.7 ATP-dependent DNA helicase RecG compare
PS417_23205 -1.7 -6.4 transcriptional regulator compare
PS417_09235 -1.7 -1.6 molecular chaperone compare
PS417_03560 -1.7 -2.4 GTP-binding protein compare
PS417_23380 -1.6 -3.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_10675 -1.5 -1.3 TetR family transcriptional regulator compare
PS417_22565 -1.4 -1.4 formyltetrahydrofolate deformylase compare
PS417_22520 -1.4 -3.3 histidine kinase compare
PS417_15135 -1.3 -1.1 hypothetical protein compare
PS417_08135 -1.3 -6.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08540 -1.3 -3.1 RNA helicase compare
PS417_17070 -1.3 -2.7 RNA polymerase subunit sigma-24 compare
PS417_19350 -1.3 -3.2 GTP cyclohydrolase compare
PS417_10025 -1.2 -1.7 bacteriophage lambda NinG family protein compare
PS417_19805 -1.2 -3.5 flagellar M-ring protein FliF compare
PS417_06500 -1.2 -1.2 hypothetical protein compare
PS417_02280 -1.2 -1.8 GlcNAc-PI de-N-acetylase compare
PS417_05695 -1.2 -4.3 transcriptional regulator compare
PS417_00195 -1.2 -2.7 hypothetical protein compare
PS417_22640 -1.2 -3.7 cytochrome C biogenesis protein CcmE compare
PS417_17945 -1.2 -1.0 hypothetical protein compare
PS417_21015 -1.2 -2.7 EstX protein compare
PS417_26230 -1.2 -3.0 electron transfer flavoprotein subunit alpha compare
PS417_03455 -1.1 -1.3 type III secretion protein compare
PS417_22445 -1.1 -2.7 ATP-dependent DNA helicase RuvB compare
PS417_02210 -1.1 -3.2 diguanylate cyclase compare
PS417_10245 -1.1 -1.7 hypothetical protein compare
PS417_08185 -1.1 -3.7 glycosyl transferase compare
PS417_13305 -1.1 -1.4 hypothetical protein compare
PS417_11175 -1.1 -2.9 AraC family transcriptional regulator compare
PS417_06540 -1.1 -0.9 membrane protein compare
PS417_22935 -1.1 -2.2 hypothetical protein compare
PS417_21625 -1.0 -1.2 DNA-binding protein compare
PS417_23370 -1.0 -2.7 protoheme IX farnesyltransferase compare
PS417_23160 -1.0 -2.7 50S rRNA methyltransferase compare
PS417_05985 -1.0 -1.8 chemotaxis protein CheY compare
PS417_18055 -1.0 -1.2 general secretion pathway protein GspK compare
PS417_16490 -1.0 -1.8 cell division protein FtsK compare
PS417_18860 -1.0 -3.0 transcriptional regulator compare
PS417_23385 -1.0 -3.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_12660 -1.0 -1.8 hypothetical protein compare
PS417_17755 -1.0 -1.2 hypothetical protein compare
PS417_02555 -1.0 -7.7 exoribonuclease R compare
PS417_01435 -1.0 -1.2 hypothetical protein compare
PS417_06680 -1.0 -5.4 nuclease PIN compare
PS417_00045 -1.0 -2.0 glycerol acyltransferase compare
PS417_16715 -1.0 -1.9 DoxX family protein compare
PS417_27155 -1.0 -1.2 aliphatic sulfonates transport ATP-binding subunit compare
PS417_03000 -0.9 -2.9 translation initiation factor Sui1 compare
PS417_05445 -0.9 -1.3 DNA mismatch repair protein MutT compare
PS417_19675 -0.9 -2.2 chemotaxis protein CheY compare
PS417_04365 -0.9 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_06095 -0.9 -1.7 energy transducer TonB compare
PS417_27865 -0.9 -1.9 LysR family transcriptional regulator compare
PS417_25225 -0.9 -1.8 MFS transporter compare
PS417_08410 -0.9 -1.5 hypothetical protein compare
PS417_19285 -0.9 -1.3 ankyrin compare
PS417_23360 -0.9 -0.9 hypothetical protein compare
PS417_09010 -0.9 -1.6 phosphohistidine phosphatase compare
PS417_05065 -0.9 -1.2 hypothetical protein compare
PS417_22570 -0.9 -0.8 H-NS histone compare
PS417_06895 -0.9 -2.6 DNA-binding protein compare
PS417_23580 -0.9 -1.1 peptidylprolyl isomerase compare
PS417_27195 -0.9 -1.1 N-acetylglutamate synthase compare
PS417_21630 -0.8 -1.3 magnesium transporter compare
PS417_27810 -0.8 -5.0 ribonuclease PH compare
PS417_02700 -0.8 -2.9 urease accessory protein UreG compare
PS417_06710 -0.8 -1.4 beta-ketoadipyl CoA thiolase compare
PS417_08220 -0.8 -0.9 epimerase compare
PS417_27315 -0.8 -1.0 hypothetical protein compare
PS417_22050 -0.8 -3.7 ribonuclease BN compare
PS417_27585 -0.8 -1.9 diaminopimelate epimerase compare
PS417_02270 -0.8 -2.6 carbamoyltransferase compare
PS417_01915 -0.8 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_10985 -0.8 -0.8 NADH:flavin oxidoreductase compare
PS417_17240 -0.8 -1.8 trigger factor compare
PS417_12390 -0.8 -1.5 hypothetical protein compare
PS417_19835 -0.8 -0.7 flagellar biosynthesis protein FliS compare
PS417_00550 -0.8 -0.9 hypothetical protein compare
PS417_22450 -0.8 -1.4 ATP-dependent DNA helicase RuvA compare
PS417_07870 -0.8 -1.4 hypothetical protein compare
PS417_05155 -0.8 -2.1 DNA polymerase III subunit chi compare
PS417_13855 -0.8 -1.0 acetyl-CoA acetyltransferase compare
PS417_21510 -0.8 -1.1 histidine kinase compare
PS417_02950 -0.8 -1.6 tRNA-dihydrouridine synthase B compare
PS417_04375 -0.8 -1.5 ABC transporter ATP-binding protein compare
PS417_08740 -0.8 -1.5 ribose-phosphate pyrophosphokinase compare
PS417_19800 -0.8 -1.6 flagellar motor switch protein FliG compare
PS417_11380 -0.8 -1.5 peptidylprolyl isomerase compare
PS417_01560 -0.8 -1.3 imidazoleglycerol-phosphate dehydratase compare
PS417_17795 -0.8 -1.2 ABC transporter permease compare
PS417_23390 -0.8 -3.1 ubiquinol oxidase subunit II compare
PS417_19095 -0.8 -0.9 hypothetical protein compare
PS417_08155 -0.8 -0.9 integration host factor subunit beta compare
PS417_28225 -0.8 -1.0 hypothetical protein compare
PS417_18040 -0.7 -1.3 general secretion pathway protein GspN compare
PS417_05830 -0.7 -2.8 hypothetical protein compare
PS417_26470 -0.7 -1.1 cytochrome C compare
PS417_00960 -0.7 -1.6 transcriptional regulator compare
PS417_19650 -0.7 -2.2 chemotaxis protein CheW compare
PS417_23210 -0.7 -1.5 serine acetyltransferase compare
PS417_06045 -0.7 -1.7 membrane protein compare
PS417_22300 -0.7 -1.1 LTXXQ domain protein compare
PS417_17805 -0.7 -1.1 microcin B17 processing protein McbC compare
PS417_00940 -0.7 -2.3 sulfate ABC transporter permease compare
PS417_24745 -0.7 -1.2 gamma-glutamyl phosphate reductase compare
PS417_21125 -0.7 -3.2 phosphoadenosine phosphosulfate reductase compare
PS417_10920 -0.7 -2.0 LysR family transcriptional regulator compare
PS417_09695 -0.7 -1.4 hydrolase compare
PS417_09210 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_15325 -0.7 -0.9 type VI secretion protein compare
PS417_05880 -0.7 -2.8 ribosomal protein S12 methylthiotransferase compare
PS417_03345 -0.7 -2.4 type I secretion protein TolC compare
PS417_10615 -0.7 -2.5 hypothetical protein compare
PS417_00945 -0.7 -2.7 sulfate ABC transporter ATP-binding protein compare
PS417_09140 -0.7 -2.2 biopolymer transporter ExbB compare
PS417_10120 -0.7 -2.1 hypothetical protein compare
PS417_08950 -0.7 -2.2 DeoR faimly transcriptional regulator compare
PS417_17370 -0.7 -3.0 C4-dicarboxylate ABC transporter compare
PS417_11075 -0.7 -1.8 hydroxypyruvate isomerase compare
PS417_21915 -0.7 -1.2 LysR family transcriptional regulator compare
PS417_19275 -0.7 -1.2 hypothetical protein compare
PS417_09460 -0.7 -1.7 alkanesulfonate monooxygenase compare
PS417_16560 -0.7 -1.7 GNAT family acetyltransferase compare
PS417_01565 -0.7 -3.4 imidazole glycerol phosphate synthase compare
PS417_21695 -0.7 -1.6 succinylglutamate-semialdehyde dehydrogenase compare
PS417_03905 -0.7 -2.6 fimbrial protein compare
PS417_20635 -0.7 -0.7 ABC transporter ATP-binding protein compare
PS417_02255 -0.7 -1.7 lipopolysaccharide kinase compare
PS417_12595 -0.7 -1.1 transcriptional regulator compare
PS417_22895 -0.7 -2.9 tyrosine recombinase XerD compare
PS417_23775 -0.7 -1.1 exodeoxyribonuclease V subunit beta compare
PS417_23490 -0.7 -0.8 dihydrofolate reductase compare
PS417_15405 -0.7 -3.4 glutathione S-transferase compare
PS417_23910 -0.7 -2.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_10425 -0.7 -0.9 hypothetical protein compare
PS417_11345 -0.7 -2.2 membrane protein compare
PS417_26280 -0.7 -2.6 NADPH:quinone reductase compare
PS417_27795 -0.7 -0.6 orotate phosphoribosyltransferase compare
PS417_18540 -0.7 -2.4 colicin V production CvpA compare
PS417_22680 -0.6 -2.3 chemotaxis protein CheY compare
PS417_05785 -0.6 -2.5 tail protein compare
PS417_19500 -0.6 -2.2 antibiotic synthesis protein MbtH compare
PS417_22620 -0.6 -2.4 pyruvate kinase compare
PS417_02815 -0.6 -1.8 urea ABC transporter ATP-binding protein compare
PS417_13735 -0.6 -0.8 hypothetical protein compare
PS417_26535 -0.6 -2.1 cytochrome B561 compare
PS417_03260 -0.6 -1.3 5S ribosomal RNA compare
PS417_19605 -0.6 -0.8 hypothetical protein compare
PS417_13525 -0.6 -2.3 membrane protein compare
PS417_27715 -0.6 -1.3 Fe-S oxidoreductase compare
PS417_06530 -0.6 -1.6 membrane protein compare
PS417_00535 -0.6 -2.0 Holliday junction resolvase compare
PS417_12455 -0.6 -1.5 hydrolase compare
PS417_04305 -0.6 -0.7 aspartate ammonia-lyase compare
PS417_03875 -0.6 -0.9 membrane protein compare
PS417_14280 -0.6 -1.6 hypothetical protein compare
PS417_17930 -0.6 -1.6 aldehyde dehydrogenase compare
PS417_01600 -0.6 -2.5 peptidase M23 compare
PS417_25155 -0.6 -0.9 hypothetical protein compare
PS417_02975 -0.6 -1.5 3-dehydroquinate dehydratase compare
PS417_18310 -0.6 -1.5 hypothetical protein compare
PS417_03025 -0.6 -2.9 penicillin-binding protein 1C compare
PS417_10870 -0.6 -1.1 GABA permease compare
PS417_08165 -0.6 -3.7 UDP-glucose 4-epimerase compare
PS417_26260 -0.6 -0.7 hypothetical protein compare
PS417_19665 -0.6 -2.0 flagellar motor protein MotD compare
PS417_07615 -0.6 -3.0 TetR family transcriptional regulator compare
PS417_13425 -0.6 -0.9 cupin compare
PS417_08190 -0.6 -4.3 membrane protein compare
PS417_23150 -0.6 -1.2 Cro/Cl family transcriptional regulator compare
PS417_11770 -0.6 -1.2 pyruvate dehydrogenase compare
PS417_16850 -0.6 -0.9 cation:proton antiporter compare
PS417_08195 -0.6 -3.5 hypothetical protein compare
PS417_17810 -0.6 -2.9 microcin B17-processing protein McbB compare
PS417_26190 -0.6 -1.9 sarcosine oxidase subunit beta compare
PS417_00825 -0.6 -1.4 recombinase RecF compare
PS417_25380 -0.6 -0.8 hypothetical protein compare
PS417_26390 -0.6 -1.1 acyltransferase compare
PS417_10185 -0.6 -1.3 hypothetical protein compare
PS417_14590 -0.6 -0.9 LysR family transcriptional regulator compare
PS417_09975 -0.6 -2.7 hypothetical protein compare
PS417_08925 -0.6 -1.7 membrane protein compare
PS417_18070 -0.6 -0.7 general secretion pathway protein GspH compare
PS417_01095 -0.6 -0.9 amino acid ABC transporter ATP-binding protein compare
PS417_08200 -0.6 -1.7 hypothetical protein compare
PS417_08230 -0.6 -1.4 lipopolysaccharide biosynthesis protein RfbH compare
PS417_07400 -0.6 -1.2 hypothetical protein compare
PS417_21280 -0.6 -2.3 membrane protein compare
PS417_25120 -0.6 -2.3 capsular biosynthesis protein compare
PS417_27840 -0.6 -2.7 hypothetical protein compare
PS417_05790 -0.5 -2.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms