Experiment set7IT024 for Pseudomonas simiae WCS417

Compare to:

LB with Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

200 most detrimental genes:

  gene name fitness t score description  
PS417_02880 +1.5 3.4 copper chaperone compare
PS417_04050 +1.3 3.1 peptide ABC transporter ATP-binding protein compare
PS417_07560 +1.3 3.1 universal stress protein UspA compare
PS417_19825 +1.2 9.9 ATPase AAA compare
PS417_26730 +1.2 1.7 pyrroline-5-carboxylate reductase compare
PS417_24370 +1.2 1.2 (2Fe-2S)-binding protein compare
PS417_24935 +1.2 1.6 hypothetical protein compare
PS417_24895 +1.2 1.5 hypothetical protein compare
PS417_08665 +1.2 4.0 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_26240 +1.2 2.3 N-methylproline demethylase compare
PS417_08670 +1.1 5.0 molybdopterin biosynthesis protein B compare
PS417_17705 +1.1 3.1 LacI family transcriptional regulator compare
PS417_07820 +1.1 2.0 transposase compare
PS417_08025 +1.1 1.5 acetylornithine aminotransferase compare
PS417_24135 +1.1 2.4 hypothetical protein compare
PS417_17305 +1.0 1.8 hypothetical protein compare
PS417_02370 +1.0 1.8 ADP-ribose pyrophosphatase compare
PS417_27075 +1.0 3.5 thiol-disulfide isomerase compare
PS417_26220 +1.0 2.3 Rieske (2Fe-2S) protein compare
PS417_17035 +1.0 1.6 Cro/Cl family transcriptional regulator compare
PS417_17550 +1.0 5.0 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_15975 +1.0 1.7 glutamate carboxypeptidase compare
PS417_01750 +1.0 3.1 histidine ammonia-lyase compare
PS417_27290 +1.0 0.9 hypothetical protein compare
PS417_05560 +1.0 2.5 ABC transporter compare
PS417_15720 +0.9 6.6 nitrate reductase compare
PS417_10575 +0.9 2.5 DNA alkylation repair protein compare
PS417_26695 +0.9 1.4 uracil phosphoribosyltransferase compare
PS417_11485 +0.9 2.0 AraC family transcriptional regulator compare
PS417_15730 +0.9 3.4 major facilitator transporter compare
PS417_19885 +0.9 2.9 flagellar basal body rod protein FlgG compare
PS417_05365 +0.9 1.4 FAD-binding protein compare
PS417_27815 +0.9 1.5 hypothetical protein compare
PS417_09605 +0.9 1.9 glycosyl transferase compare
PS417_09470 +0.9 1.2 hypothetical protein compare
PS417_10455 +0.9 2.6 membrane protein compare
PS417_03380 +0.9 1.0 hypothetical protein compare
PS417_19725 +0.9 3.4 flagellar biosynthesis protein FlhB compare
PS417_14540 +0.9 1.3 cytochrome C oxidase subunit III compare
PS417_20715 +0.9 2.2 cytochrome Cbb3 compare
PS417_22735 +0.9 5.8 thiol oxidoreductase compare
PS417_19880 +0.8 3.9 flagellar basal body L-ring protein compare
PS417_10810 +0.8 1.8 hypothetical protein compare
PS417_23855 +0.8 1.9 ABC transporter substrate-binding protein compare
PS417_06445 +0.8 1.6 iron-siderophore ABC transporter permease compare
PS417_27040 +0.8 1.6 3-phosphoglycerate dehydrogenase compare
PS417_07455 +0.8 1.3 glutamine amidotransferase compare
PS417_19790 +0.8 2.1 ATP synthase compare
PS417_11875 +0.8 3.1 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare
PS417_15480 +0.8 1.6 ABC transporter substrate-binding protein compare
PS417_25710 +0.8 1.5 indole-3-glycerol-phosphate synthase compare
PS417_14120 +0.8 4.2 molybdenum ABC transporter permease compare
PS417_02740 +0.8 1.4 LysR family transcriptional regulator compare
PS417_02805 +0.8 1.7 urease subunit gamma compare
PS417_05085 +0.8 3.3 ribosomal subunit interface protein compare
PS417_14065 +0.8 3.7 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_26850 +0.8 0.7 twin-arginine translocation pathway signal protein compare
PS417_26530 +0.8 1.0 hypothetical protein compare
PS417_05210 +0.8 3.8 copper oxidase compare
PS417_19830 +0.8 1.8 flagellar assembly protein FliT compare
PS417_08335 +0.8 1.7 hypothetical protein compare
PS417_05010 +0.8 1.7 IclR family transcriptional regulator compare
PS417_15715 +0.8 4.5 nitrate reductase compare
PS417_08730 +0.8 1.4 cytochrome C compare
PS417_19785 +0.8 2.1 flagellar biogenesis protein compare
PS417_16815 +0.8 0.9 acyl-CoA dehydrogenase compare
PS417_27835 +0.8 2.8 endoribonuclease compare
PS417_15735 +0.8 3.4 histidine kinase compare
PS417_17630 +0.8 2.5 RNA polymerase sigma factor compare
PS417_28450 +0.8 1.7 XRE family transcriptional regulator compare
PS417_04080 +0.8 1.7 peptide ABC transporter substrate-binding protein compare
PS417_09915 +0.7 0.7 hypothetical protein compare
PS417_15540 +0.7 1.0 NUDIX hydrolase compare
PS417_21570 +0.7 2.3 flagellar basal body rod protein FlgB compare
PS417_03525 +0.7 1.0 hypothetical protein compare
PS417_00510 +0.7 0.9 membrane protein compare
PS417_21565 +0.7 2.4 flagellar basal body rod protein FlgC compare
PS417_02485 +0.7 2.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_17675 +0.7 1.2 ABC transporter compare
PS417_08365 +0.7 0.8 hypothetical protein compare
PS417_26175 +0.7 0.5 sarcosine oxidase subunit gamma compare
PS417_19765 +0.7 4.1 flagellar hook-length control protein compare
PS417_26270 +0.7 1.7 AraC family transcriptional regulator compare
PS417_26805 +0.7 0.7 cell division protein FtsE compare
PS417_22870 +0.7 2.4 lipoprotein compare
PS417_20160 +0.7 2.8 cysteine synthase compare
PS417_08045 +0.7 0.9 uracil permease compare
PS417_22740 +0.7 3.5 imelysin compare
PS417_14115 +0.7 3.7 molybdate ABC transporter substrate-binding protein compare
PS417_01115 +0.7 1.4 serine acetyltransferase compare
PS417_22745 +0.7 2.7 hypothetical protein compare
PS417_11945 +0.7 2.1 hypothetical protein compare
PS417_08650 +0.7 2.2 transcriptional regulator compare
PS417_17505 +0.7 1.7 LuxR family transcriptional regulator compare
PS417_23170 +0.7 1.7 FeS assembly protein IscX compare
PS417_12695 +0.7 3.9 mannitol dehydrogenase compare
PS417_19730 +0.7 1.3 flagellar biosynthesis protein FliR compare
PS417_10995 +0.7 1.5 GntR family transcriptional regulator compare
PS417_09575 +0.7 2.2 glutathione S-transferase compare
PS417_20755 +0.7 3.2 membrane protein compare
PS417_27875 +0.7 3.2 histidine kinase compare
PS417_00755 +0.7 0.7 biofilm PGA synthesis protein PgaD compare
PS417_08435 +0.7 1.7 pilus assembly protein PilZ compare
PS417_01145 +0.7 0.9 taurine transporter ATP-binding subunit compare
PS417_12515 +0.7 2.2 lactate dehydrogenase compare
PS417_09340 +0.7 2.7 spermidine/putrescine ABC transporter ATP-binding protein compare
PS417_17565 +0.7 2.6 branched-chain amino acid aminotransferase compare
PS417_05165 +0.7 1.7 cytosol aminopeptidase compare
PS417_21495 +0.7 1.9 lipoprotein compare
PS417_19720 +0.7 0.6 DNA-binding protein compare
PS417_02895 +0.7 1.3 precorrin-6Y C5,15-methyltransferase compare
PS417_10685 +0.7 3.1 acyl-CoA dehydrogenase compare
PS417_17545 +0.7 2.4 2-oxoisovalerate dehydrogenase compare
PS417_09045 +0.7 1.8 histidine kinase compare
PS417_14305 +0.6 1.9 hydroxyproline-2-epimerase compare
PS417_14655 +0.6 0.9 lysine transporter LysE compare
PS417_19430 +0.6 1.8 ureidoglycolate hydrolase compare
PS417_00455 +0.6 1.6 hypothetical protein compare
PS417_05055 +0.6 1.5 hypothetical protein compare
PS417_14325 +0.6 2.1 AraC family transcriptional regulator compare
PS417_21395 +0.6 4.5 radical SAM protein compare
PS417_08940 +0.6 1.5 thioesterase compare
PS417_15255 +0.6 2.7 serine/threonine protein kinase compare
PS417_14125 +0.6 2.4 molybdenum ABC transporter ATP-binding protein compare
PS417_06945 +0.6 0.8 membrane protein compare
PS417_24615 +0.6 0.8 hypothetical protein compare
PS417_24165 +0.6 3.0 hypothetical protein compare
PS417_21425 +0.6 1.4 4-amino-4-deoxychorismate lyase compare
PS417_11700 +0.6 3.8 ligand-gated channel compare
PS417_11455 +0.6 2.1 hypothetical protein compare
PS417_19735 +0.6 2.5 flagellar biosynthesis protein FliQ compare
PS417_15875 +0.6 1.1 LuxR family transcriptional regulator compare
PS417_09160 +0.6 2.0 GNAT family acetyltransferase compare
PS417_06700 +0.6 1.7 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) (from data) compare
PS417_21355 +0.6 1.0 hypothetical protein compare
PS417_02035 +0.6 1.2 3-ketoacyl-ACP reductase compare
PS417_05975 +0.6 0.6 chemotaxis protein CheW compare
PS417_20705 +0.6 2.5 cbb3-type cytochrome c oxidase subunit II compare
PS417_03430 +0.6 2.5 methyltransferase type 11 compare
PS417_18850 +0.6 1.5 hypothetical protein compare
PS417_24030 +0.6 1.3 MFS transporter compare
PS417_16860 +0.6 1.4 diadenosine tetraphosphate hydrolase compare
PS417_21375 +0.6 2.5 ADP-ribosylglycohydrolase compare
PS417_19020 +0.6 1.5 dimethylmenaquinone methyltransferase compare
PS417_26290 +0.6 2.0 4-hydroxybenzoyl-CoA thioesterase compare
PS417_13165 +0.6 0.9 peroxidase compare
PS417_02385 +0.6 0.8 esterase compare
PS417_19740 +0.6 2.2 flagellar biosynthesis protein flip compare
PS417_10910 +0.6 1.5 FAD-dependent oxidoreductase compare
PS417_02075 +0.6 2.2 thioesterase compare
PS417_07250 +0.6 2.1 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data) compare
PS417_18235 +0.6 1.5 nitrile hydratase compare
PS417_09150 +0.6 1.4 energy transducer TonB compare
PS417_10490 +0.6 1.7 delta-aminolevulinic acid dehydratase compare
PS417_18350 +0.6 1.4 hypothetical protein compare
PS417_17440 +0.6 0.9 beta-lactamase compare
PS417_02160 +0.6 0.7 hypothetical protein compare
PS417_04225 +0.6 1.4 conjugal transfer protein TraR compare
PS417_23830 +0.6 4.2 hypothetical protein compare
PS417_18910 +0.6 2.9 acetylornithine deacetylase compare
PS417_12940 +0.6 3.0 sugar ABC transporter substrate-binding protein compare
PS417_07565 +0.6 1.8 hypothetical protein compare
PS417_00715 +0.6 3.0 required for octanoate transport, together with NodT, MFP, and FUSC proteins (PS417_00725, PS417_00720, PS417_00710) (from data) compare
PS417_19745 +0.6 4.1 flagellar assembly protein FliO compare
PS417_15740 +0.6 2.5 hypothetical protein compare
PS417_00155 +0.6 1.7 2-dehydro-3-deoxygalactonokinase compare
PS417_10275 +0.6 1.1 histidine kinase compare
PS417_11410 +0.6 1.8 phospholipase compare
PS417_19630 +0.6 1.5 LuxR family transcriptional regulator compare
PS417_26305 +0.6 1.7 AraC family transcriptional regulator compare
PS417_06370 +0.6 1.0 cold-shock protein compare
PS417_24675 +0.6 1.5 lipoyl synthase compare
PS417_03200 +0.6 1.8 ArsR family transcriptional regulator compare
PS417_15495 +0.6 1.3 FAD-dependent oxidoreductase compare
PS417_15710 +0.6 1.9 nitrate reductase compare
PS417_04705 +0.6 0.9 hypothetical protein compare
PS417_03900 +0.6 1.8 type II secretion system protein F compare
PS417_19520 +0.6 1.6 transcriptional regulator compare
PS417_26420 +0.6 1.0 hypothetical protein compare
PS417_05710 +0.6 1.6 hypothetical protein compare
PS417_04760 +0.6 1.8 hypothetical protein compare
PS417_07255 +0.6 2.3 Deoxyribonolactonase (from data) compare
PS417_26245 +0.5 2.2 hypothetical protein compare
PS417_19710 +0.5 3.3 flagellar biosynthesis protein FlhA compare
PS417_19200 +0.5 1.7 fumarate hydratase compare
PS417_21780 +0.5 1.5 argininosuccinate lyase compare
PS417_00355 +0.5 1.2 metal ABC transporter permease compare
PS417_09930 +0.5 1.0 hypothetical protein compare
PS417_26560 +0.5 2.9 amino acid dehydrogenase compare
PS417_11720 +0.5 2.1 class V aminotransferase compare
PS417_00345 +0.5 1.6 copper-binding protein compare
PS417_12175 +0.5 1.2 peptide ABC transporter permease compare
PS417_09300 +0.5 1.4 peptidylprolyl isomerase compare
PS417_04340 +0.5 1.9 ribosome hibernation promoting factor HPF compare
PS417_18990 +0.5 1.3 membrane protein compare
PS417_08680 +0.5 1.7 flagellar biosynthesis protein FlhB compare
PS417_09640 +0.5 2.9 capsular biosynthesis protein compare
PS417_18445 +0.5 1.0 glycerol-3-phosphatase compare
PS417_23575 +0.5 1.5 hypothetical protein compare
PS417_22305 +0.5 1.8 histidine kinase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms