Experiment set7IT020 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x

200 most important genes:

  gene name fitness t score description  
PS417_24155 -4.9 -5.8 ATP-binding protein compare
PS417_01605 -4.8 -3.3 phosphoglycerate mutase compare
PS417_27795 -4.1 -1.5 orotate phosphoribosyltransferase compare
PS417_27040 -4.1 -3.4 3-phosphoglycerate dehydrogenase compare
PS417_05595 -3.9 -10.4 ornithine carbamoyltransferase compare
PS417_24745 -3.7 -7.1 gamma-glutamyl phosphate reductase compare
PS417_02415 -3.6 -8.5 phosphoserine phosphatase compare
PS417_08125 -3.5 -2.2 prephenate dehydratase compare
PS417_28220 -3.4 -3.0 LysR family transcriptional regulator compare
PS417_20985 -3.2 -4.3 porin compare
PS417_02510 -3.1 -6.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_22450 -3.1 -3.3 ATP-dependent DNA helicase RuvA compare
PS417_27435 -3.0 -9.7 polyphosphate kinase compare
PS417_01575 -3.0 -8.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27195 -2.9 -1.7 N-acetylglutamate synthase compare
PS417_23545 -2.9 -4.4 gamma-glutamyl kinase compare
PS417_22690 -2.9 -6.7 phosphogluconate dehydratase compare
PS417_00180 -2.8 -5.3 tryptophan synthase subunit alpha compare
PS417_23770 -2.8 -3.1 exodeoxyribonuclease V subunit alpha compare
PS417_01565 -2.8 -9.6 imidazole glycerol phosphate synthase compare
PS417_20160 -2.7 -3.0 cysteine synthase compare
PS417_04420 -2.7 -10.9 histidinol dehydrogenase compare
PS417_04415 -2.6 -11.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01855 -2.5 -3.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_23995 -2.5 -1.5 preprotein translocase subunit SecG compare
PS417_12855 -2.5 -4.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27870 -2.4 -7.4 ATP-dependent DNA helicase RecG compare
PS417_00185 -2.3 -4.9 tryptophan synthase subunit beta compare
PS417_01570 -2.3 -2.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_01850 -2.2 -8.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_02000 -2.2 -12.2 glutamate synthase compare
PS417_02005 -2.2 -10.5 glutamate synthase compare
PS417_23805 -2.1 -6.0 acetolactate synthase 3 regulatory subunit compare
PS417_23950 -2.1 -3.9 polynucleotide phosphorylase/polyadenylase compare
PS417_18560 -2.1 -7.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_20125 -2.0 -5.2 phosphoribosylglycinamide formyltransferase compare
PS417_07170 -2.0 -3.1 hypothetical protein compare
PS417_08220 -2.0 -1.8 epimerase compare
PS417_23810 -2.0 -10.4 acetolactate synthase 3 catalytic subunit compare
PS417_25715 -1.9 -5.3 anthranilate phosphoribosyltransferase compare
PS417_06375 -1.9 -1.1 deoxycytidine triphosphate deaminase compare
PS417_23800 -1.8 -9.7 ketol-acid reductoisomerase compare
PS417_27835 -1.8 -7.3 endoribonuclease compare
PS417_26890 -1.7 -4.9 dihydroxy-acid dehydratase compare
PS417_01560 -1.7 -3.0 imidazoleglycerol-phosphate dehydratase compare
PS417_26995 -1.7 -8.0 phosphoserine phosphatase compare
PS417_09235 -1.7 -1.8 molecular chaperone compare
PS417_18690 -1.7 -4.5 aromatic amino acid aminotransferase compare
PS417_18530 -1.7 -5.1 O-succinylhomoserine sulfhydrylase compare
PS417_18585 -1.7 -6.4 3-isopropylmalate dehydrogenase compare
PS417_20635 -1.6 -1.5 ABC transporter ATP-binding protein compare
PS417_04380 -1.6 -2.6 ABC transporter permease compare
PS417_03560 -1.6 -3.6 GTP-binding protein compare
PS417_06680 -1.5 -8.2 nuclease PIN compare
PS417_26745 -1.5 -5.6 methionine biosynthesis protein MetW compare
PS417_01580 -1.5 -1.6 imidazole glycerol phosphate synthase compare
PS417_26740 -1.5 -6.9 homoserine acetyltransferase compare
PS417_07165 -1.5 -3.2 dihydrodipicolinate synthase compare
PS417_02555 -1.5 -10.9 exoribonuclease R compare
PS417_22520 -1.4 -2.9 histidine kinase compare
PS417_08155 -1.4 -1.7 integration host factor subunit beta compare
PS417_12290 -1.4 -5.5 sulfite reductase compare
PS417_05120 -1.4 -3.1 RNA polymerase subunit sigma-24 compare
PS417_04650 -1.4 -2.1 D-alanine--D-alanine ligase compare
PS417_04305 -1.4 -2.1 aspartate ammonia-lyase compare
PS417_10015 -1.4 -1.6 hypothetical protein compare
PS417_22620 -1.4 -4.1 pyruvate kinase compare
PS417_23110 -1.4 -6.6 2-isopropylmalate synthase compare
PS417_16465 -1.3 -7.5 sirohydrochlorin ferrochelatase compare
PS417_21125 -1.3 -6.5 phosphoadenosine phosphosulfate reductase compare
PS417_11175 -1.3 -3.4 AraC family transcriptional regulator compare
PS417_05975 -1.3 -0.9 chemotaxis protein CheW compare
PS417_22445 -1.3 -4.7 ATP-dependent DNA helicase RuvB compare
PS417_08225 -1.3 -5.1 acetolactate synthase compare
PS417_08185 -1.3 -3.4 glycosyl transferase compare
PS417_23315 -1.3 -1.4 transcriptional regulator compare
PS417_22810 -1.3 -2.1 DNA base-flipping protein YbaZ compare
PS417_06530 -1.2 -3.3 membrane protein compare
PS417_25725 -1.2 -6.3 anthranilate synthase component I compare
PS417_21000 -1.2 -2.9 CrfX protein compare
PS417_26695 -1.2 -1.4 uracil phosphoribosyltransferase compare
PS417_19275 -1.2 -1.7 hypothetical protein compare
PS417_08190 -1.2 -8.2 membrane protein compare
PS417_06645 -1.2 -7.1 RNA polymerase-associated protein RapA compare
PS417_26730 -1.2 -1.0 pyrroline-5-carboxylate reductase compare
PS417_20855 -1.1 -1.4 hypothetical protein compare
PS417_10245 -1.1 -1.5 hypothetical protein compare
PS417_18595 -1.1 -3.8 3-isopropylmalate dehydratase compare
PS417_04270 -1.1 -6.1 ribonuclease G compare
PS417_03380 -1.1 -1.3 hypothetical protein compare
PS417_08540 -1.1 -3.0 RNA helicase compare
PS417_06835 -1.1 -1.9 phospholipase compare
PS417_08135 -1.0 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_19675 -1.0 -4.3 chemotaxis protein CheY compare
PS417_08435 -1.0 -1.8 pilus assembly protein PilZ compare
PS417_08335 -1.0 -2.1 hypothetical protein compare
PS417_07615 -1.0 -4.9 TetR family transcriptional regulator compare
PS417_21510 -1.0 -2.1 histidine kinase compare
PS417_08195 -1.0 -6.3 hypothetical protein compare
PS417_27585 -1.0 -3.1 diaminopimelate epimerase compare
PS417_06200 -1.0 -4.2 protein-PII uridylyltransferase compare
PS417_18600 -1.0 -2.0 isopropylmalate isomerase compare
PS417_25710 -1.0 -0.7 indole-3-glycerol-phosphate synthase compare
PS417_18860 -1.0 -3.9 transcriptional regulator compare
PS417_26990 -1.0 -1.4 RNA pyrophosphohydrolase compare
PS417_11400 -1.0 -1.0 phosphoglycerate mutase compare
PS417_08230 -1.0 -2.6 lipopolysaccharide biosynthesis protein RfbH compare
PS417_23135 -0.9 -1.2 GTP-binding protein compare
PS417_12015 -0.9 -2.6 phosphoglycerate mutase compare
PS417_19065 -0.9 -0.9 monooxygenase compare
PS417_10095 -0.9 -1.2 hypothetical protein compare
PS417_00345 -0.9 -1.6 copper-binding protein compare
PS417_07000 -0.9 -2.6 hypothetical protein compare
PS417_05790 -0.9 -4.3 hypothetical protein compare
PS417_22695 -0.9 -5.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_06370 -0.9 -1.4 cold-shock protein compare
PS417_17610 -0.9 -1.3 AsnC family transcriptional regulator compare
PS417_16490 -0.9 -1.6 cell division protein FtsK compare
PS417_07710 -0.9 -5.3 membrane protein compare
PS417_15135 -0.9 -1.2 hypothetical protein compare
PS417_01435 -0.9 -1.3 hypothetical protein compare
PS417_22840 -0.9 -1.8 tRNA-Met compare
PS417_06400 -0.9 -2.7 succinylglutamate desuccinylase compare
PS417_01995 -0.9 -1.6 hypothetical protein compare
PS417_08245 -0.9 -1.3 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_08205 -0.9 -2.6 acetyltransferase compare
PS417_13425 -0.9 -1.2 cupin compare
PS417_01095 -0.8 -1.2 amino acid ABC transporter ATP-binding protein compare
PS417_02560 -0.8 -1.6 23S rRNA methyltransferase compare
PS417_04385 -0.8 -3.2 organic solvent ABC transporter substrate-binding protein compare
PS417_14810 -0.8 -2.5 Fosmidomycin resistance protein compare
PS417_01920 -0.8 -1.6 ATP-dependent protease subunit HslV compare
PS417_25720 -0.8 -2.0 anthranilate synthase component II compare
PS417_15890 -0.8 -2.1 RNA polymerase sigma factor compare
PS417_12490 -0.8 -1.3 autotransporter adhesin compare
PS417_13140 -0.8 -1.5 oxidoreductase compare
PS417_10840 -0.8 -1.2 amidase compare
PS417_26985 -0.8 -3.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_27865 -0.8 -1.9 LysR family transcriptional regulator compare
PS417_08545 -0.8 -1.4 aromatic ring-opening dioxygenase LigB compare
PS417_14140 -0.8 -1.6 membrane protein compare
PS417_06895 -0.8 -2.9 DNA-binding protein compare
PS417_14110 -0.8 -3.4 2-nitropropane dioxygenase compare
PS417_26390 -0.8 -1.6 acyltransferase compare
PS417_11535 -0.8 -2.0 nicotinate phosphoribosyltransferase compare
PS417_01620 -0.8 -2.0 preprotein translocase subunit SecB compare
PS417_18425 -0.8 -1.6 sporulation protein compare
PS417_19955 -0.8 -1.9 hypothetical protein compare
PS417_18780 -0.8 -1.3 flavin reductase compare
PS417_11810 -0.8 -2.0 oxidoreductase compare
PS417_21705 -0.8 -2.3 arginine N-succinyltransferase compare
PS417_19650 -0.8 -2.9 chemotaxis protein CheW compare
PS417_20665 -0.8 -4.3 hypothetical protein compare
PS417_18205 -0.8 -1.3 aldehyde dehydrogenase compare
PS417_08200 -0.8 -2.5 hypothetical protein compare
PS417_02950 -0.8 -1.8 tRNA-dihydrouridine synthase B compare
PS417_21070 -0.7 -1.4 aconitate hydratase compare
PS417_15655 -0.7 -2.0 hypothetical protein compare
PS417_05695 -0.7 -3.1 transcriptional regulator compare
PS417_26645 -0.7 -1.8 chemotaxis protein compare
PS417_25270 -0.7 -2.0 NrdR family transcriptional regulator compare
PS417_10320 -0.7 -2.1 hypothetical protein compare
PS417_18040 -0.7 -1.3 general secretion pathway protein GspN compare
PS417_00810 -0.7 -1.8 RNA polymerase sigma factor compare
PS417_23900 -0.7 -4.0 poly(A) polymerase compare
PS417_07595 -0.7 -2.6 PasA protein compare
PS417_22935 -0.7 -2.5 hypothetical protein compare
PS417_28050 -0.7 -3.4 hypothetical protein compare
PS417_02805 -0.7 -1.3 urease subunit gamma compare
PS417_08410 -0.7 -1.3 hypothetical protein compare
PS417_00015 -0.7 -4.1 recombinase RecF compare
PS417_21285 -0.7 -2.8 hypothetical protein compare
PS417_21655 -0.7 -0.6 aspartate kinase compare
PS417_22535 -0.7 -3.0 ornithine acetyltransferase compare
PS417_13885 -0.7 -2.0 chemotaxis protein CheY compare
PS417_22050 -0.7 -3.0 ribonuclease BN compare
PS417_13870 -0.7 -1.9 hypothetical protein compare
PS417_23375 -0.7 -1.6 cytochrome C oxidase compare
PS417_18070 -0.7 -0.9 general secretion pathway protein GspH compare
PS417_12840 -0.7 -2.0 TetR family transcriptional regulator compare
PS417_05785 -0.7 -2.7 tail protein compare
PS417_04075 -0.7 -2.8 peptide ABC transporter substrate-binding protein compare
PS417_14400 -0.7 -1.6 hypothetical protein compare
PS417_06600 -0.7 -0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_01955 -0.7 -4.2 peptidase compare
PS417_12990 -0.7 -2.9 nucleoside hydrolase compare
PS417_18260 -0.7 -2.3 TetR family transcriptional regulator compare
PS417_27675 -0.7 -2.5 xanthine phosphoribosyltransferase compare
PS417_21915 -0.7 -1.5 LysR family transcriptional regulator compare
PS417_05815 -0.7 -2.4 recombinase RecA compare
PS417_06165 -0.7 -2.1 thiamine biosynthesis protein ThiF compare
PS417_01915 -0.7 -0.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_12555 -0.7 -3.5 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_04935 -0.7 -2.2 hypothetical protein compare
PS417_13710 -0.7 -2.1 hypothetical protein compare
PS417_27425 -0.6 -4.0 exopolyphosphatase compare
PS417_16195 -0.6 -0.8 AraC family transcriptional regulator compare
PS417_02365 -0.6 -1.8 hypothetical protein compare
PS417_03300 -0.6 -2.1 alanine acetyltransferase compare
PS417_20775 -0.6 -2.4 coproporphyrinogen III oxidase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in exudates experiments

For exudates Brachypodium distachyon 27-day exudates across organisms