Experiment set7IT019 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x

200 most important genes:

  gene name fitness t score description  
PS417_22690 -5.4 -3.6 phosphogluconate dehydratase compare
PS417_05595 -4.8 -9.9 ornithine carbamoyltransferase compare
PS417_24155 -4.6 -6.1 ATP-binding protein compare
PS417_01575 -4.4 -6.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_24745 -4.4 -6.7 gamma-glutamyl phosphate reductase compare
PS417_27040 -4.4 -2.2 3-phosphoglycerate dehydrogenase compare
PS417_08125 -4.2 -2.0 prephenate dehydratase compare
PS417_23545 -4.0 -5.1 gamma-glutamyl kinase compare
PS417_02415 -3.9 -6.0 phosphoserine phosphatase compare
PS417_27795 -3.9 -1.3 orotate phosphoribosyltransferase compare
PS417_01605 -3.8 -2.9 phosphoglycerate mutase compare
PS417_01565 -3.7 -7.6 imidazole glycerol phosphate synthase compare
PS417_27195 -3.7 -1.7 N-acetylglutamate synthase compare
PS417_01855 -3.7 -3.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_03560 -3.7 -2.9 GTP-binding protein compare
PS417_27435 -3.6 -8.5 polyphosphate kinase compare
PS417_02005 -3.5 -12.5 glutamate synthase compare
PS417_28220 -3.3 -3.7 LysR family transcriptional regulator compare
PS417_12855 -3.3 -6.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18560 -3.3 -10.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_01850 -3.2 -6.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_02000 -3.2 -13.8 glutamate synthase compare
PS417_23800 -3.2 -14.1 ketol-acid reductoisomerase compare
PS417_00185 -3.2 -5.8 tryptophan synthase subunit beta compare
PS417_23810 -3.1 -15.3 acetolactate synthase 3 catalytic subunit compare
PS417_04415 -3.1 -8.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_20985 -3.1 -4.6 porin compare
PS417_25715 -3.0 -4.5 anthranilate phosphoribosyltransferase compare
PS417_23995 -3.0 -1.4 preprotein translocase subunit SecG compare
PS417_20160 -2.9 -2.9 cysteine synthase compare
PS417_26995 -2.9 -9.1 phosphoserine phosphatase compare
PS417_02510 -2.8 -7.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_04420 -2.8 -12.1 histidinol dehydrogenase compare
PS417_18585 -2.6 -5.6 3-isopropylmalate dehydrogenase compare
PS417_16465 -2.6 -11.5 sirohydrochlorin ferrochelatase compare
PS417_26745 -2.6 -5.7 methionine biosynthesis protein MetW compare
PS417_26740 -2.6 -10.8 homoserine acetyltransferase compare
PS417_25710 -2.5 -1.7 indole-3-glycerol-phosphate synthase compare
PS417_00180 -2.5 -3.7 tryptophan synthase subunit alpha compare
PS417_06375 -2.5 -1.2 deoxycytidine triphosphate deaminase compare
PS417_26730 -2.5 -1.2 pyrroline-5-carboxylate reductase compare
PS417_18530 -2.5 -5.2 O-succinylhomoserine sulfhydrylase compare
PS417_01580 -2.4 -1.7 imidazole glycerol phosphate synthase compare
PS417_27835 -2.4 -9.2 endoribonuclease compare
PS417_23805 -2.4 -6.8 acetolactate synthase 3 regulatory subunit compare
PS417_18595 -2.3 -4.0 3-isopropylmalate dehydratase compare
PS417_12290 -2.3 -9.3 sulfite reductase compare
PS417_26890 -2.3 -5.1 dihydroxy-acid dehydratase compare
PS417_25725 -2.3 -10.5 anthranilate synthase component I compare
PS417_02720 -2.3 -1.5 TetR family transcriptional regulator compare
PS417_23110 -2.2 -7.8 2-isopropylmalate synthase compare
PS417_18600 -2.2 -4.5 isopropylmalate isomerase compare
PS417_23770 -2.2 -3.1 exodeoxyribonuclease V subunit alpha compare
PS417_12555 -2.2 -8.3 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_04380 -2.1 -2.8 ABC transporter permease compare
PS417_25720 -2.0 -3.8 anthranilate synthase component II compare
PS417_22520 -2.0 -4.3 histidine kinase compare
PS417_01560 -2.0 -2.4 imidazoleglycerol-phosphate dehydratase compare
PS417_07170 -2.0 -3.5 hypothetical protein compare
PS417_20125 -1.9 -5.2 phosphoribosylglycinamide formyltransferase compare
PS417_02555 -1.8 -12.7 exoribonuclease R compare
PS417_18690 -1.8 -5.6 aromatic amino acid aminotransferase compare
PS417_03310 -1.8 -6.9 carbonate dehydratase compare
PS417_27585 -1.7 -3.0 diaminopimelate epimerase compare
PS417_22620 -1.7 -3.6 pyruvate kinase compare
PS417_21705 -1.6 -5.2 arginine N-succinyltransferase compare
PS417_14065 -1.6 -6.7 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_23950 -1.6 -2.4 polynucleotide phosphorylase/polyadenylase compare
PS417_04375 -1.6 -2.6 ABC transporter ATP-binding protein compare
PS417_02805 -1.6 -2.2 urease subunit gamma compare
PS417_06685 -1.5 -1.1 beta-ketoadipyl CoA thiolase compare
PS417_10015 -1.4 -1.6 hypothetical protein compare
PS417_06645 -1.4 -7.1 RNA polymerase-associated protein RapA compare
PS417_23775 -1.4 -1.7 exodeoxyribonuclease V subunit beta compare
PS417_24465 -1.4 -7.2 metallopeptidase compare
PS417_22990 -1.4 -1.5 iron dicitrate transport regulator FecR compare
PS417_21630 -1.4 -2.7 magnesium transporter compare
PS417_23380 -1.3 -2.7 cytochrome o ubiquinol oxidase subunit III compare
PS417_07165 -1.3 -2.0 dihydrodipicolinate synthase compare
PS417_06680 -1.3 -6.2 nuclease PIN compare
PS417_06845 -1.3 -1.7 lipoprotein compare
PS417_04270 -1.3 -6.4 ribonuclease G compare
PS417_01570 -1.3 -1.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_08135 -1.3 -5.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04410 -1.2 -1.4 hypothetical protein compare
PS417_08540 -1.2 -3.1 RNA helicase compare
PS417_18590 -1.2 -2.9 SAM-dependent methyltransferase compare
PS417_20635 -1.1 -1.1 ABC transporter ATP-binding protein compare
PS417_17070 -1.1 -2.7 RNA polymerase subunit sigma-24 compare
PS417_06200 -1.1 -4.4 protein-PII uridylyltransferase compare
PS417_00195 -1.1 -2.4 hypothetical protein compare
PS417_03815 -1.1 -2.1 DNA transporter compare
PS417_27705 -1.1 -1.6 amino acid dehydrogenase compare
PS417_05815 -1.1 -3.1 recombinase RecA compare
PS417_12560 -1.1 -6.5 MFS transporter compare
PS417_01290 -1.0 -1.7 ADP-ribose diphosphatase compare
PS417_23205 -1.0 -2.8 transcriptional regulator compare
PS417_22850 -1.0 -4.1 virulence factor family protein compare
PS417_00755 -1.0 -0.7 biofilm PGA synthesis protein PgaD compare
PS417_08990 -1.0 -3.9 ABC transporter substrate-binding protein compare
PS417_16715 -1.0 -1.6 DoxX family protein compare
PS417_19285 -1.0 -1.6 ankyrin compare
PS417_05445 -1.0 -1.3 DNA mismatch repair protein MutT compare
PS417_23580 -1.0 -1.2 peptidylprolyl isomerase compare
PS417_24675 -1.0 -1.8 lipoyl synthase compare
PS417_05120 -1.0 -1.8 RNA polymerase subunit sigma-24 compare
PS417_21000 -1.0 -2.0 CrfX protein compare
PS417_21430 -1.0 -2.4 3-oxoacyl-ACP synthase compare
PS417_05695 -1.0 -4.3 transcriptional regulator compare
PS417_06530 -1.0 -2.6 membrane protein compare
PS417_05570 -1.0 -4.1 DeoR faimly transcriptional regulator compare
PS417_14140 -0.9 -2.1 membrane protein compare
PS417_18720 -0.9 -3.5 endonuclease compare
PS417_08155 -0.9 -1.5 integration host factor subunit beta compare
PS417_22695 -0.9 -6.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_13195 -0.9 -3.2 RND transporter MFP subunit compare
PS417_00030 -0.9 -3.2 hypothetical protein compare
PS417_27800 -0.9 -4.6 exodeoxyribonuclease III compare
PS417_06095 -0.9 -1.4 energy transducer TonB compare
PS417_06355 -0.9 -2.3 protein-L-isoaspartate O-methyltransferase compare
PS417_16100 -0.9 -2.3 antibiotic biosynthesis monooxygenase compare
PS417_01425 -0.9 -2.7 AraC family transcriptional regulator compare
PS417_12280 -0.9 -1.7 MerR family transcriptional regulator compare
PS417_07710 -0.9 -4.9 membrane protein compare
PS417_19095 -0.9 -1.5 hypothetical protein compare
PS417_11175 -0.9 -1.6 AraC family transcriptional regulator compare
PS417_00085 -0.9 -2.4 16S rRNA methyltransferase compare
PS417_23900 -0.9 -4.9 poly(A) polymerase compare
PS417_18160 -0.9 -1.8 YeeE/YedE compare
PS417_23915 -0.9 -2.8 pantoate--beta-alanine ligase compare
PS417_08580 -0.9 -3.2 histidine kinase compare
PS417_00940 -0.9 -3.1 sulfate ABC transporter permease compare
PS417_15805 -0.8 -1.5 transporter compare
PS417_01030 -0.8 -1.0 glutamine ABC transporter substrate-binding protein compare
PS417_12565 -0.8 -1.6 2-dehydro-3-deoxygluconokinase compare
PS417_22085 -0.8 -1.6 aldehyde dehydrogenase compare
PS417_00945 -0.8 -2.2 sulfate ABC transporter ATP-binding protein compare
PS417_15330 -0.8 -4.1 type VI secretion protein ImpA compare
PS417_03495 -0.8 -1.5 type III secretory protein EscS compare
PS417_28230 -0.8 -1.4 transcriptional regulator compare
PS417_27865 -0.8 -2.1 LysR family transcriptional regulator compare
PS417_27205 -0.8 -2.6 adenylate cyclase compare
PS417_17780 -0.8 -0.6 Ais protein compare
PS417_09235 -0.8 -1.0 molecular chaperone compare
PS417_27975 -0.8 -3.2 type VI secretion protein compare
PS417_10600 -0.8 -1.3 hypothetical protein compare
PS417_03260 -0.8 -1.2 5S ribosomal RNA compare
PS417_13510 -0.8 -1.0 polyketide cyclase compare
PS417_27940 -0.7 -1.4 type VI secretion protein compare
PS417_18425 -0.7 -1.5 sporulation protein compare
PS417_09010 -0.7 -2.0 phosphohistidine phosphatase compare
PS417_23910 -0.7 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_12570 -0.7 -2.3 AP endonuclease compare
PS417_03100 -0.7 -0.9 pilus assembly protein compare
PS417_00825 -0.7 -1.1 recombinase RecF compare
PS417_07875 -0.7 -0.7 hypothetical protein compare
PS417_22300 -0.7 -1.1 LTXXQ domain protein compare
PS417_16775 -0.7 -1.8 branched-chain amino acid ABC transporter ATP-binding protein compare
PS417_14980 -0.7 -0.8 universal stress protein UspA compare
PS417_17945 -0.7 -0.7 hypothetical protein compare
PS417_17445 -0.7 -2.4 sulfur oxidation protein SoxZ compare
PS417_08410 -0.7 -1.1 hypothetical protein compare
PS417_27840 -0.7 -3.4 hypothetical protein compare
PS417_25175 -0.7 -1.8 hypothetical protein compare
PS417_02560 -0.7 -1.5 23S rRNA methyltransferase compare
PS417_26280 -0.7 -2.0 NADPH:quinone reductase compare
PS417_25390 -0.7 -2.6 MFS transporter compare
PS417_18040 -0.7 -1.2 general secretion pathway protein GspN compare
PS417_02700 -0.7 -1.9 urease accessory protein UreG compare
PS417_21510 -0.7 -1.0 histidine kinase compare
PS417_10220 -0.7 -2.9 hypothetical protein compare
PS417_19605 -0.7 -1.0 hypothetical protein compare
PS417_06175 -0.7 -3.1 cysteine sulfinate desulfinase compare
PS417_24525 -0.7 -1.3 nuclease compare
PS417_07985 -0.7 -1.1 AbrB family transcriptional regulator compare
PS417_26645 -0.7 -1.5 chemotaxis protein compare
PS417_19500 -0.7 -2.8 antibiotic synthesis protein MbtH compare
PS417_10920 -0.7 -1.7 LysR family transcriptional regulator compare
PS417_22700 -0.7 -1.2 RNA polymerase subunit sigma-24 compare
PS417_16555 -0.7 -1.4 cupin compare
PS417_22840 -0.7 -1.4 tRNA-Met compare
PS417_11530 -0.7 -2.4 amidase compare
PS417_04365 -0.7 -0.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_13165 -0.7 -1.3 peroxidase compare
PS417_14935 -0.7 -1.5 transposase compare
PS417_07000 -0.7 -2.7 hypothetical protein compare
PS417_07595 -0.7 -2.0 PasA protein compare
PS417_26805 -0.6 -0.4 cell division protein FtsE compare
PS417_17240 -0.6 -2.4 trigger factor compare
PS417_05500 -0.6 -1.2 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_22640 -0.6 -1.9 cytochrome C biogenesis protein CcmE compare
PS417_17610 -0.6 -1.0 AsnC family transcriptional regulator compare
PS417_15470 -0.6 -3.0 saccharopine dehydrogenase compare
PS417_07140 -0.6 -2.5 peptidase M48 compare
PS417_08205 -0.6 -2.6 acetyltransferase compare
PS417_25650 -0.6 -2.1 anhydro-N-acetylmuramic acid kinase compare
PS417_27870 -0.6 -2.2 ATP-dependent DNA helicase RecG compare
PS417_06745 -0.6 -1.4 polysaccharide deacetylase compare
PS417_04390 -0.6 -3.7 toluene tolerance protein compare
PS417_24785 -0.6 -1.7 nucleoside-diphosphate sugar epimerase compare


Specific Phenotypes

For 2 genes in this experiment

For exudates Brachypodium distachyon 13-day exudates in Pseudomonas simiae WCS417

For exudates Brachypodium distachyon 13-day exudates across organisms