Experiment set7IT019 for Agrobacterium fabrum C58

Compare to:

Lactitol carbon source

200 most important genes:

  gene name fitness t score description  
Atu1845 -8.0 -5.5 phosphoribosylformylglycinamidine synthase I compare
Atu2036 -7.0 -13.4 acetolactate synthase III, large subunit compare
Atu2289 -6.8 -17.6 anthranilate synthase component I and II compare
Atu0099 -6.7 -12.1 prephenate dehydratase compare
Atu2791 -6.6 -9.1 3-isopropylmalate dehydrogenase compare
Atu2650 -6.6 -12.1 glycerol-3-phosphate dehydrogenase compare
Atu2264 -6.5 -14.6 2-isopropylmalate synthase compare
Atu1687 -6.5 -10.9 anthranilate phosphoribosyltransferase compare
Atu1205 -6.4 -14.2 threonine dehydratase compare
Atu3885 -6.2 -8.5 inositol monophosphatase compare
Atu3706 -6.1 -10.2 D-3-phosphoglycerate dehydrogenase compare
Atu1308 -6.1 -5.9 aspartate carbamoyl transferase catalytic subunit compare
Atu0017 -6.1 -4.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1850 -6.1 -4.2 phosphoribosylformylglycinamidine synthetase II compare
Atu0537 -6.0 -7.1 histidinol dehydrogenase compare
Atu0679 -5.8 -8.0 ATP phosphoribosyltransferase compare
Atu2709 -5.8 -19.0 3-isopropylmalate dehydratase, large subunit compare
Atu1588 -5.8 -11.9 homoserine dehydrogenase compare
Atu2718 -5.7 -9.5 homoserine O-succinyltransferase compare
Atu0486 -5.7 -5.5 dihydroorotate dehydrogenase compare
Atu1844 -5.7 -3.7 Phosphoribosylformylglycinamidine synthetase compare
Atu0432 -5.7 -10.9 O-succinylhomoserine sulfhydrylase compare
Atu2040 -5.6 -7.7 phosphoserine phosphatase compare
Atu1141 -5.5 -8.5 Phosphoribosylglycinamide synthetase compare
Atu2790 -5.4 -3.1 3-isopropylmalate dehydratase, small subunit compare
Atu0678 -5.4 -7.4 histidyl-tRNA synthetase compare
Atu2155 -5.4 -20.0 methionine synthase compare
Atu3754 -5.4 -9.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3150 -5.3 -10.1 sugar ABC transporter permease compare
Atu3147 -5.2 -18.3 oxidoreductase compare
Atu0647 -5.1 -7.0 phosphoribosylamine--glycine ligase compare
Atu1030 -5.0 -3.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1446 -5.0 -3.4 two component response regulator compare
Atu1075 -4.9 -8.3 amidophosphoribosyltransferase compare
Atu3755 -4.9 -7.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3783 -4.8 -20.2 glutamate synthase subunit beta compare
Atu1750 -4.8 -2.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu3347 -4.8 -12.0 hypothetical protein conserved
Atu1140 -4.7 -4.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1359 -4.7 -1.9 dnaK deletion suppressor protein compare
Atu3707 -4.7 -5.5 phosphoserine aminotransferase compare
Atu0039 -4.6 -3.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu0038 -4.5 -6.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3784 -4.5 -24.4 glutamate synthase large subunit compare
Atu3348 -4.4 -9.6 hypothetical protein conserved
Atu1307 -4.4 -6.1 dihydroorotase compare
Atu0184 -4.4 -3.0 glucokinase compare
Atu2726 -4.3 -22.9 pyruvate carboxylase compare
Atu1688 -4.3 -5.5 indole-3-glycerol-phosphate synthase compare
Atu0400 -4.3 -4.7 orotate phosphoribosyltransferase compare
Atu3352 -4.2 -17.4 sugar ABC transporter substrate-binding protein compare
Atu3152 -4.2 -9.2 AraC family transcriptional regulator compare
Atu0043 -4.2 -4.1 imidazoleglycerol-phosphate dehydratase compare
Atu0399 -4.2 -4.9 dihydroorotase compare
Atu2015 -4.1 -12.3 aminotransferase compare
Atu3469 -4.1 -3.9 phosphoglyceromutase compare
Atu2747 -4.0 -12.5 hypothetical protein compare
Atu0346 -4.0 -3.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0041 -3.9 -3.4 glutamine amidotransferase compare
Atu3151 -3.9 -11.3 sugar ABC transporter substrate-binding protein conserved
Atu0298 -3.9 -7.0 orotidine 5 compare
Atu4773 -3.9 -2.1 two component response regulator compare
Atu3351 -3.8 -12.8 sugar ABC transporter permease conserved
Atu3148 -3.7 -11.9 sugar ABC transporter ATPase compare
Atu3149 -3.7 -12.0 sugar ABC transporter permease compare
Atu0401 -3.7 -6.5 fructokinase compare
Atu1456 -3.6 -13.0 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0047 -3.6 -13.2 malate synthase G compare
Atu3739 -3.5 -5.0 phosphoglycerate kinase compare
Atu1686 -3.5 -16.2 peptidyl-prolyl cis-trans isomerse D compare
Atu0641 -3.4 -5.3 hypothetical protein compare
Atu0040 -3.4 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3350 -3.4 -11.3 ABC transporter permease conserved
Atu2274 -3.2 -10.1 cation efflux system protein compare
Atu2123 -3.1 -6.6 methylenetetrahydrofolate reductase compare
Atu2548 -3.0 -15.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1454 -2.9 -10.1 siroheme synthase compare
Atu3482 -2.8 -8.6 pantoate--beta-alanine ligase compare
Atu3349 -2.8 -8.5 ABC transporter permease conserved
Atu3483 -2.7 -6.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0029 -2.7 -8.1 S-adenosylhomocysteine hydrolase compare
Atu1589 -2.5 -9.5 aminotransferase, class I compare
Atu0030 -2.2 -2.6 phosphocarrier protein HPr compare
Atu3731 -2.1 -7.3 5-formyltetrahydrofolate cyclo-ligase compare
Atu0434 -2.1 -2.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4711 -2.0 -6.3 two component sensor kinase compare
Atu1455 -2.0 -3.9 hypothetical protein compare
Atu1685 -2.0 -1.8 hypothetical protein compare
Atu0598 -1.9 -7.6 phosphogluconate dehydratase compare
Atu1464 -1.8 -6.5 glycine cleavage system T protein, aminomethyltransferase compare
Atu0536 -1.7 -6.8 hypothetical protein compare
Atu0086 -1.7 -1.8 ribosome-binding factor A compare
Atu1463 -1.7 -4.8 glycine cleavage system component H compare
Atu1182 -1.6 -3.0 hypothetical protein compare
Atu1462 -1.6 -8.7 glycine cleavage system protein P2 compare
Atu3730 -1.5 -2.6 hypothetical protein compare
Atu1620 -1.5 -8.1 triosephosphate isomerase compare
Atu0803 -1.5 -11.1 pyruvate,orthophosphate dikinase compare
Atu0188 -1.4 -3.6 ABC transporter, membrane spanning protein (peptide) compare
Atu0031 -1.4 -1.5 PTS system, IIA component compare
Atu4318 -1.4 -6.9 xylitol dehydrogenase compare
Atu6114 -1.4 -1.8 hypothetical protein compare
Atu0769 -1.4 -1.9 protoheme IX farnesyltransferase compare
Atu0422 -1.4 -1.9 ABC transporter, membrane spanning protein compare
Atu8115 -1.3 -3.7 Hypothetical Protein compare
Atu0876 -1.2 -1.3 superoxide dismutase compare
Atu0062 -1.2 -6.5 transcriptional regulator, ROK family compare
Atu1457 -1.2 -2.3 hypothetical protein compare
Atu2205 -1.2 -6.5 transcriptional regulator, MarR family compare
Atu0638 -1.2 -2.7 hypothetical protein compare
Atu1445 -1.2 -3.1 two component sensor kinase compare
Atu0953 -1.1 -1.4 hypothetical protein compare
Atu2209 -1.1 -4.1 pyrroline-5-carboxylate reductase compare
Atu0777 -1.1 -1.2 hypothetical protein compare
Atu1028 -1.0 -2.2 hypothetical protein compare
Atu5028 -1.0 -3.5 IS426 transposase compare
Atu8056 -1.0 -1.2 hypothetical protein compare
Atu5125 -1.0 -2.9 GntR family transcriptional regulator compare
Atu1327 -1.0 -2.6 NADH-ubiquinone oxidoreductase compare
Atu1219 -0.9 -1.4 hypothetical protein compare
Atu0421 -0.9 -1.3 ABC transporter, membrane spanning protein compare
Atu4148 -0.9 -4.4 UDP-glucuronic acid epimerase compare
Atu0845 -0.9 -2.7 hypothetical protein compare
Atu1546 -0.9 -4.7 transcriptional regulator, MerR family compare
Atu4053 -0.9 -1.6 succinoglycan biosynthesis protein compare
Atu6045 -0.9 -1.5 replication protein C compare
Atu5057 -0.9 -1.9 hypothetical protein compare
Atu2554 -0.9 -1.9 lysyl-tRNA synthetase compare
Atu5045 -0.9 -1.8 hypothetical protein compare
Atu1439 -0.8 -1.8 hypothetical protein compare
Atu0535 -0.8 -3.6 hypothetical protein compare
Atu0190 -0.8 -5.0 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1714 -0.8 -1.4 exonuclease III compare
Atu0354 -0.8 -1.9 ferric uptake regulator compare
Atu0786 -0.8 -3.5 peptidase, family M16 compare
Atu8054 -0.8 -0.7 hypothetical protein compare
Atu3740 -0.8 -4.9 fructose bisphosphate aldolase compare
Atu2376 -0.8 -0.6 hypothetical protein compare
Atu2352 -0.8 -1.7 hypothetical protein compare
Atu1149 -0.7 -1.4 adenylate cyclase compare
Atu2163 -0.7 -1.2 hypothetical protein compare
Atu3963 -0.7 -4.2 GntR family transcriptional regulator compare
Atu3721 -0.7 -1.1 hypothetical protein compare
Atu2238 -0.7 -3.2 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu3486 -0.7 -2.2 DeoR family transcriptional regulator compare
Atu0894 -0.7 -2.1 ABC transporter, membrane spanning protein compare
Atu2237 -0.7 -2.1 cytochrome c1 compare
Atu2113 -0.7 -2.1 N-acetylmuramoyl-L-alanine amidase compare
Atu0723 -0.7 -1.2 FAD dependent oxidoreductase compare
Atu0565 -0.7 -1.7 hypothetical protein compare
Atu6098 -0.7 -0.5 transcriptional regulator, HTH family compare
Atu1417 -0.7 -3.2 enoyl-CoA hydratase compare
Atu2555 -0.6 -1.9 L-lysine 2,3-aminomutase compare
Atu1581 -0.6 -1.7 hypothetical protein compare
Atu1774 -0.6 -4.2 ABC transporter, substrate binding protein (peptide) compare
Atu6138 -0.6 -3.1 Repressor of the acc and arc operons compare
Atu4166 -0.6 -1.6 UDP-glucose 4-epimerase compare
Atu6165 -0.6 -0.7 hypothetical protein compare
Atu5115 -0.6 -1.3 hypothetical protein compare
Atu2489 -0.6 -3.4 hypothetical protein compare
Atu4077 -0.6 -4.6 glycogen branching protein compare
Atu3732 -0.6 -3.0 hemolysin compare
Atu0477 -0.6 -1.3 hypothetical protein compare
Atu3572 -0.6 -3.9 transcriptional regulator compare
Atu4617 -0.6 -4.3 dTDP-D-glucose-4,6-dehydratase compare
Atu3509 -0.6 -1.8 hypothetical protein compare
Atu0332 -0.6 -3.2 RNA polymerase sigma-54 factor compare
Atu0687 -0.6 -1.6 hypothetical protein compare
Atu2745 -0.6 -4.6 acetyl-coenzyme A synthetase compare
Atu1705 -0.6 -2.0 SEC-independent protein translocase protein compare
Atu2063 -0.6 -1.0 hypothetical protein compare
Atu3763 -0.6 -1.0 hypothetical protein compare
Atu0983 -0.6 -1.3 hypothetical protein compare
Atu0837 -0.6 -2.5 transcriptional regulator, MarR family compare
Atu3485 -0.6 -3.6 short chain dehydrogenase compare
Atu0722 -0.6 -3.4 hypothetical protein compare
Atu0225 -0.6 -0.7 hypothetical protein compare
Atu2821 -0.6 -3.0 transcriptional regulator, GntR family compare
Atu1891 -0.6 -2.2 cobalamin biosynthesis protein compare
Atu4505 -0.6 -3.1 LacI family transcriptional regulator compare
Atu0189 -0.6 -1.1 ABC transporter, membrane spanning protein (peptide) compare
Atu0971 -0.6 -2.1 two component sensor kinase compare
Atu4502 -0.6 -2.6 cobalamin synthesis protein compare
Atu4346 -0.6 -1.9 hypothetical protein compare
Atu2439 -0.6 -0.9 hypothetical protein compare
Atu4373 -0.5 -2.6 LacI family transcriptional regulator compare
Atu3164 -0.5 -2.9 sorbitol dehydrogenase compare
Atu2249 -0.5 -0.8 hypothetical protein compare
Atu3619 -0.5 -1.6 hypothetical protein compare
Atu2684 -0.5 -0.8 hypothetical protein compare
Atu3337 -0.5 -3.7 LacI family transcriptional regulator compare
Atu2770 -0.5 -2.4 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu2035 -0.5 -3.0 acetolactate synthase, small subunit compare
Atu0926 -0.5 -2.9 hypothetical protein compare
Atu4540 -0.5 -1.4 protocatechuate 3,4-dioxygenase subunit beta compare
Atu4317 -0.5 -1.3 TetR family transcriptional regulator compare
Atu0300 -0.5 -3.0 methyltransferase compare
Atu0119 -0.5 -0.8 hypothetical protein compare
Atu2728 -0.5 -2.2 beta (1-->2) glucan export ATP-binding protein compare
Atu4406 -0.5 -1.5 periplasmic nitrate reductase, ferredoxin-like protein compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source Lactitol in Agrobacterium fabrum C58

For carbon source Lactitol across organisms