Experiment set7IT018 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

200 most important genes:

  gene name fitness t score description  
PS417_01855 -6.5 -4.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_24155 -5.7 -6.7 ATP-binding protein compare
PS417_20985 -4.6 -5.6 porin compare
PS417_27795 -4.2 -1.6 orotate phosphoribosyltransferase compare
PS417_23545 -4.0 -4.1 gamma-glutamyl kinase compare
PS417_06375 -3.8 -1.4 deoxycytidine triphosphate deaminase compare
PS417_20160 -3.8 -4.6 cysteine synthase compare
PS417_01575 -3.7 -7.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_24745 -3.6 -7.9 gamma-glutamyl phosphate reductase compare
PS417_08125 -3.6 -2.3 prephenate dehydratase compare
PS417_04415 -3.4 -10.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_27040 -3.4 -2.6 3-phosphoglycerate dehydrogenase compare
PS417_05595 -3.2 -8.5 ornithine carbamoyltransferase compare
PS417_27435 -3.1 -7.0 polyphosphate kinase compare
PS417_02415 -3.1 -8.4 phosphoserine phosphatase compare
PS417_02510 -3.0 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_27195 -3.0 -2.8 N-acetylglutamate synthase compare
PS417_01850 -3.0 -10.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01605 -2.9 -2.1 phosphoglycerate mutase compare
PS417_00180 -2.9 -5.6 tryptophan synthase subunit alpha compare
PS417_04420 -2.7 -10.9 histidinol dehydrogenase compare
PS417_22450 -2.6 -3.0 ATP-dependent DNA helicase RuvA compare
PS417_23995 -2.6 -1.6 preprotein translocase subunit SecG compare
PS417_01565 -2.6 -5.0 imidazole glycerol phosphate synthase compare
PS417_28220 -2.4 -4.1 LysR family transcriptional regulator compare
PS417_12855 -2.4 -6.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23810 -2.3 -15.6 acetolactate synthase 3 catalytic subunit compare
PS417_26995 -2.3 -11.0 phosphoserine phosphatase compare
PS417_22690 -2.3 -5.1 phosphogluconate dehydratase compare
PS417_23805 -2.2 -6.6 acetolactate synthase 3 regulatory subunit compare
PS417_25710 -2.2 -1.7 indole-3-glycerol-phosphate synthase compare
PS417_27870 -2.2 -6.6 ATP-dependent DNA helicase RecG compare
PS417_00185 -2.2 -5.6 tryptophan synthase subunit beta compare
PS417_23950 -2.2 -5.6 polynucleotide phosphorylase/polyadenylase compare
PS417_20125 -2.1 -4.3 phosphoribosylglycinamide formyltransferase compare
PS417_23800 -2.1 -10.4 ketol-acid reductoisomerase compare
PS417_02000 -2.1 -14.0 glutamate synthase compare
PS417_07165 -2.1 -5.5 dihydrodipicolinate synthase compare
PS417_07170 -2.1 -3.2 hypothetical protein compare
PS417_02005 -2.0 -10.6 glutamate synthase compare
PS417_26890 -2.0 -6.6 dihydroxy-acid dehydratase compare
PS417_25715 -2.0 -7.2 anthranilate phosphoribosyltransferase compare
PS417_01580 -1.9 -1.2 imidazole glycerol phosphate synthase compare
PS417_18560 -1.9 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_07470 -1.8 -2.4 hypothetical protein compare
PS417_01570 -1.8 -2.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_27835 -1.8 -6.9 endoribonuclease compare
PS417_01560 -1.7 -2.2 imidazoleglycerol-phosphate dehydratase compare
PS417_22520 -1.7 -3.8 histidine kinase compare
PS417_18585 -1.7 -6.7 3-isopropylmalate dehydrogenase compare
PS417_19605 -1.7 -2.1 hypothetical protein compare
PS417_23770 -1.7 -2.5 exodeoxyribonuclease V subunit alpha compare
PS417_16465 -1.6 -9.1 sirohydrochlorin ferrochelatase compare
PS417_08245 -1.6 -2.0 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_22620 -1.6 -5.5 pyruvate kinase compare
PS417_12290 -1.5 -7.4 sulfite reductase compare
PS417_18600 -1.5 -3.5 isopropylmalate isomerase compare
PS417_26740 -1.5 -6.3 homoserine acetyltransferase compare
PS417_02555 -1.4 -10.3 exoribonuclease R compare
PS417_06680 -1.4 -8.0 nuclease PIN compare
PS417_23110 -1.4 -7.5 2-isopropylmalate synthase compare
PS417_21000 -1.4 -3.1 CrfX protein compare
PS417_03560 -1.3 -2.5 GTP-binding protein compare
PS417_18530 -1.3 -5.2 O-succinylhomoserine sulfhydrylase compare
PS417_16555 -1.3 -1.7 cupin compare
PS417_26745 -1.3 -4.0 methionine biosynthesis protein MetW compare
PS417_08090 -1.3 -1.3 3-oxoacyl-ACP reductase compare
PS417_18595 -1.3 -4.4 3-isopropylmalate dehydratase compare
PS417_28230 -1.3 -3.4 transcriptional regulator compare
PS417_04375 -1.2 -2.4 ABC transporter ATP-binding protein compare
PS417_21125 -1.2 -6.4 phosphoadenosine phosphosulfate reductase compare
PS417_10015 -1.2 -1.6 hypothetical protein compare
PS417_06645 -1.2 -7.6 RNA polymerase-associated protein RapA compare
PS417_18690 -1.2 -3.7 aromatic amino acid aminotransferase compare
PS417_12375 -1.2 -2.5 serine/threonine protein phosphatase compare
PS417_01145 -1.2 -1.2 taurine transporter ATP-binding subunit compare
PS417_19675 -1.2 -3.5 chemotaxis protein CheY compare
PS417_08190 -1.2 -9.0 membrane protein compare
PS417_22840 -1.1 -2.3 tRNA-Met compare
PS417_25720 -1.1 -2.7 anthranilate synthase component II compare
PS417_04380 -1.1 -2.3 ABC transporter permease compare
PS417_00385 -1.1 -1.3 Fur family transcriptional regulator compare
PS417_08540 -1.1 -3.1 RNA helicase compare
PS417_26695 -1.1 -1.4 uracil phosphoribosyltransferase compare
PS417_04270 -1.1 -5.7 ribonuclease G compare
PS417_17610 -1.1 -2.3 AsnC family transcriptional regulator compare
PS417_21630 -1.0 -2.7 magnesium transporter compare
PS417_23775 -1.0 -1.8 exodeoxyribonuclease V subunit beta compare
PS417_13510 -1.0 -1.3 polyketide cyclase compare
PS417_08185 -1.0 -4.3 glycosyl transferase compare
PS417_02720 -1.0 -1.2 TetR family transcriptional regulator compare
PS417_08155 -1.0 -1.8 integration host factor subunit beta compare
PS417_09235 -1.0 -1.3 molecular chaperone compare
PS417_23915 -1.0 -4.3 pantoate--beta-alanine ligase compare
PS417_03100 -1.0 -1.4 pilus assembly protein compare
PS417_17925 -1.0 -1.9 acyl-CoA dehydrogenase compare
PS417_22050 -1.0 -4.0 ribonuclease BN compare
PS417_07595 -1.0 -4.0 PasA protein compare
PS417_05695 -1.0 -3.7 transcriptional regulator compare
PS417_06530 -1.0 -2.6 membrane protein compare
PS417_05790 -1.0 -2.6 hypothetical protein compare
PS417_20635 -1.0 -1.1 ABC transporter ATP-binding protein compare
PS417_05985 -0.9 -1.6 chemotaxis protein CheY compare
PS417_03310 -0.9 -3.4 carbonate dehydratase compare
PS417_09010 -0.9 -2.2 phosphohistidine phosphatase compare
PS417_27865 -0.9 -1.5 LysR family transcriptional regulator compare
PS417_26730 -0.9 -0.9 pyrroline-5-carboxylate reductase compare
PS417_21480 -0.9 -1.4 23S rRNA pseudouridylate synthase compare
PS417_06600 -0.9 -1.0 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_23900 -0.9 -6.5 poly(A) polymerase compare
PS417_23135 -0.9 -1.6 GTP-binding protein compare
PS417_08580 -0.9 -4.1 histidine kinase compare
PS417_18425 -0.9 -1.8 sporulation protein compare
PS417_04585 -0.9 -1.4 hypothetical protein compare
PS417_15095 -0.9 -2.5 hypothetical protein compare
PS417_14280 -0.9 -2.2 hypothetical protein compare
PS417_11305 -0.9 -2.5 general secretion pathway protein GspF compare
PS417_15915 -0.9 -1.3 hypothetical protein compare
PS417_12110 -0.9 -1.3 ATP-binding protein compare
PS417_06200 -0.9 -3.6 protein-PII uridylyltransferase compare
PS417_02280 -0.9 -1.7 GlcNAc-PI de-N-acetylase compare
PS417_10220 -0.8 -4.0 hypothetical protein compare
PS417_25725 -0.8 -4.3 anthranilate synthase component I compare
PS417_21510 -0.8 -1.4 histidine kinase compare
PS417_08135 -0.8 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_15135 -0.8 -0.6 hypothetical protein compare
PS417_06895 -0.8 -3.1 DNA-binding protein compare
PS417_22695 -0.8 -5.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_11820 -0.8 -2.0 histidine kinase compare
PS417_05785 -0.8 -3.1 tail protein compare
PS417_25380 -0.8 -1.5 hypothetical protein compare
PS417_26985 -0.8 -4.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_12455 -0.8 -2.5 hydrolase compare
PS417_14980 -0.8 -0.9 universal stress protein UspA compare
PS417_15215 -0.8 -1.9 protein activator of alkane oxidation PraA compare
PS417_17565 -0.8 -1.8 branched-chain amino acid aminotransferase compare
PS417_16560 -0.8 -1.6 GNAT family acetyltransferase compare
PS417_03460 -0.8 -2.5 type III secretion protein HrpI compare
PS417_07875 -0.8 -0.8 hypothetical protein compare
PS417_25815 -0.8 -3.3 magnesium transporter ApaG compare
PS417_17070 -0.8 -1.9 RNA polymerase subunit sigma-24 compare
PS417_02950 -0.8 -1.9 tRNA-dihydrouridine synthase B compare
PS417_24615 -0.7 -1.0 hypothetical protein compare
PS417_10320 -0.7 -1.5 hypothetical protein compare
PS417_04390 -0.7 -4.3 toluene tolerance protein compare
PS417_07000 -0.7 -2.7 hypothetical protein compare
PS417_18860 -0.7 -2.2 transcriptional regulator compare
PS417_20665 -0.7 -3.9 hypothetical protein compare
PS417_14805 -0.7 -1.6 AraC family transcriptional regulator compare
PS417_03970 -0.7 -1.3 1-phosphofructokinase compare
PS417_22950 -0.7 -1.7 preQ0 transporter compare
PS417_20775 -0.7 -3.7 coproporphyrinogen III oxidase compare
PS417_19350 -0.7 -3.5 GTP cyclohydrolase compare
PS417_26155 -0.7 -1.5 hypothetical protein compare
PS417_18730 -0.7 -2.1 ABC transporter permease compare
PS417_08740 -0.7 -2.0 ribose-phosphate pyrophosphokinase compare
PS417_23580 -0.7 -1.3 peptidylprolyl isomerase compare
PS417_28050 -0.7 -2.6 hypothetical protein compare
PS417_11175 -0.7 -1.5 AraC family transcriptional regulator compare
PS417_12555 -0.7 -3.5 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_22640 -0.7 -2.4 cytochrome C biogenesis protein CcmE compare
PS417_27585 -0.7 -2.4 diaminopimelate epimerase compare
PS417_07615 -0.7 -3.1 TetR family transcriptional regulator compare
PS417_13735 -0.7 -1.1 hypothetical protein compare
PS417_22565 -0.7 -1.0 formyltetrahydrofolate deformylase compare
PS417_06095 -0.7 -1.5 energy transducer TonB compare
PS417_06540 -0.7 -1.0 membrane protein compare
PS417_11180 -0.7 -1.4 TetR family transcriptional regulator compare
PS417_21705 -0.7 -2.4 arginine N-succinyltransferase compare
PS417_01965 -0.7 -1.9 fimbriae biosynthesis protein compare
PS417_12840 -0.7 -1.6 TetR family transcriptional regulator compare
PS417_13195 -0.7 -2.6 RND transporter MFP subunit compare
PS417_25390 -0.7 -2.3 MFS transporter compare
PS417_18760 -0.7 -1.9 hypothetical protein compare
PS417_11615 -0.7 -1.3 urea ABC transporter ATP-binding protein compare
PS417_10740 -0.7 -1.8 hypothetical protein compare
PS417_08200 -0.7 -2.5 hypothetical protein compare
PS417_16100 -0.7 -1.7 antibiotic biosynthesis monooxygenase compare
PS417_08195 -0.7 -3.4 hypothetical protein compare
PS417_14590 -0.7 -1.2 LysR family transcriptional regulator compare
PS417_19955 -0.7 -1.6 hypothetical protein compare
PS417_06745 -0.7 -1.0 polysaccharide deacetylase compare
PS417_23910 -0.7 -2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_22445 -0.7 -2.0 ATP-dependent DNA helicase RuvB compare
PS417_18040 -0.7 -1.3 general secretion pathway protein GspN compare
PS417_17240 -0.7 -1.9 trigger factor compare
PS417_11400 -0.7 -1.3 phosphoglycerate mutase compare
PS417_09505 -0.7 -1.9 hypothetical protein compare
PS417_11585 -0.6 -1.5 LuxR family transcriptional regulator compare
PS417_11810 -0.6 -1.3 oxidoreductase compare
PS417_18590 -0.6 -1.7 SAM-dependent methyltransferase compare
PS417_06355 -0.6 -1.8 protein-L-isoaspartate O-methyltransferase compare
PS417_23205 -0.6 -3.0 transcriptional regulator compare
PS417_18370 -0.6 -1.8 hypothetical protein compare
PS417_10695 -0.6 -1.6 decarboxylase compare
PS417_20855 -0.6 -1.1 hypothetical protein compare
PS417_14940 -0.6 -1.2 LysR family transcriptional regulator compare
PS417_23670 -0.6 -2.5 Muconate cycloisomerase (EC 5.5.1.1) (from data) compare
PS417_15710 -0.6 -1.8 nitrate reductase compare
PS417_12750 -0.6 -3.6 acriflavine resistance protein B compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms