Experiment set7IT018 for Agrobacterium fabrum C58

Compare to:

Lactulose carbon source

200 most important genes:

  gene name fitness t score description  
Atu1140 -8.7 -6.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0038 -7.3 -7.2 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2040 -7.1 -4.9 phosphoserine phosphatase compare
Atu2264 -6.8 -13.0 2-isopropylmalate synthase compare
Atu0432 -6.7 -10.3 O-succinylhomoserine sulfhydrylase compare
Atu1075 -6.7 -6.6 amidophosphoribosyltransferase compare
Atu2289 -6.7 -18.9 anthranilate synthase component I and II compare
Atu1307 -6.7 -4.6 dihydroorotase compare
Atu2709 -6.5 -19.2 3-isopropylmalate dehydratase, large subunit compare
Atu1687 -6.4 -12.3 anthranilate phosphoribosyltransferase compare
Atu2718 -6.4 -8.8 homoserine O-succinyltransferase compare
Atu2155 -6.3 -22.3 methionine synthase compare
Atu0679 -6.3 -7.5 ATP phosphoribosyltransferase compare
Atu0017 -6.3 -4.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0537 -6.2 -7.4 histidinol dehydrogenase compare
Atu2036 -6.2 -17.9 acetolactate synthase III, large subunit compare
Atu1588 -6.2 -11.9 homoserine dehydrogenase compare
Atu2791 -6.1 -10.4 3-isopropylmalate dehydrogenase compare
Atu1141 -6.1 -7.1 Phosphoribosylglycinamide synthetase compare
Atu1205 -6.0 -15.8 threonine dehydratase compare
Atu1845 -5.9 -6.0 phosphoribosylformylglycinamidine synthase I compare
Atu3783 -5.8 -19.4 glutamate synthase subunit beta compare
Atu1308 -5.8 -6.2 aspartate carbamoyl transferase catalytic subunit compare
Atu3755 -5.8 -5.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1456 -5.7 -13.4 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0099 -5.7 -12.5 prephenate dehydratase compare
Atu1844 -5.7 -5.3 Phosphoribosylformylglycinamidine synthetase compare
Atu1688 -5.7 -7.8 indole-3-glycerol-phosphate synthase compare
Atu3706 -5.5 -12.4 D-3-phosphoglycerate dehydrogenase compare
Atu0678 -5.5 -7.6 histidyl-tRNA synthetase compare
Atu3150 -5.5 -11.1 sugar ABC transporter permease conserved
Atu3885 -5.4 -11.1 inositol monophosphatase compare
Atu3347 -5.4 -10.5 hypothetical protein compare
Atu3707 -5.4 -5.2 phosphoserine aminotransferase compare
Atu0041 -5.3 -3.6 glutamine amidotransferase compare
Atu1030 -5.2 -3.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3784 -5.2 -29.4 glutamate synthase large subunit compare
Atu3147 -5.1 -21.9 oxidoreductase compare
Atu0298 -5.1 -6.0 orotidine 5 compare
Atu2726 -5.0 -24.4 pyruvate carboxylase compare
Atu0047 -5.0 -19.7 malate synthase G compare
Atu2650 -5.0 -13.6 glycerol-3-phosphate dehydrogenase compare
Atu0400 -5.0 -4.8 orotate phosphoribosyltransferase compare
Atu0647 -5.0 -7.6 phosphoribosylamine--glycine ligase compare
Atu0486 -4.9 -5.9 dihydroorotate dehydrogenase compare
Atu1750 -4.9 -3.2 phosphoribosyl c-AMP cyclohydrolase compare
Atu1359 -4.9 -2.0 dnaK deletion suppressor protein compare
Atu2747 -4.9 -16.5 hypothetical protein compare
Atu2274 -4.8 -13.5 cation efflux system protein compare
Atu0043 -4.8 -4.7 imidazoleglycerol-phosphate dehydratase compare
Atu3754 -4.8 -8.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2790 -4.8 -3.8 3-isopropylmalate dehydratase, small subunit compare
Atu0399 -4.7 -4.6 dihydroorotase compare
Atu1850 -4.7 -3.8 phosphoribosylformylglycinamidine synthetase II compare
Atu3348 -4.6 -9.4 hypothetical protein compare
Atu3151 -4.5 -10.6 sugar ABC transporter substrate-binding protein conserved
Atu0401 -4.5 -8.3 fructokinase compare
Atu3351 -4.4 -13.8 sugar ABC transporter permease compare
Atu3149 -4.2 -16.9 sugar ABC transporter permease compare
Atu3148 -4.2 -10.1 sugar ABC transporter ATPase conserved
Atu3152 -4.1 -9.3 AraC family transcriptional regulator compare
Atu2123 -4.1 -9.1 methylenetetrahydrofolate reductase compare
Atu3349 -4.1 -11.0 ABC transporter permease compare
Atu3350 -3.9 -15.3 ABC transporter permease compare
Atu2015 -3.9 -15.9 aminotransferase compare
Atu0641 -3.9 -5.5 hypothetical protein compare
Atu1589 -3.8 -8.9 aminotransferase, class I compare
Atu0184 -3.8 -3.7 glucokinase compare
Atu1446 -3.8 -3.6 two component response regulator compare
Atu3352 -3.8 -14.4 sugar ABC transporter substrate-binding protein compare
Atu1454 -3.7 -7.6 siroheme synthase compare
Atu3739 -3.7 -4.3 phosphoglycerate kinase compare
Atu3469 -3.6 -4.2 phosphoglyceromutase compare
Atu0040 -3.6 -2.0 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2548 -3.3 -19.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0346 -3.3 -4.9 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0030 -3.3 -2.9 phosphocarrier protein HPr compare
Atu3482 -3.3 -9.9 pantoate--beta-alanine ligase compare
Atu1686 -3.2 -14.8 peptidyl-prolyl cis-trans isomerse D compare
Atu3483 -3.0 -9.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0803 -2.7 -16.7 pyruvate,orthophosphate dikinase compare
Atu4773 -2.7 -2.6 two component response regulator compare
Atu4711 -2.7 -8.3 two component sensor kinase compare
Atu0536 -2.7 -10.9 hypothetical protein compare
Atu0039 -2.6 -2.0 imidazoleglycerol-phosphate synthase cyclase compare
Atu0029 -2.5 -7.5 S-adenosylhomocysteine hydrolase compare
Atu0598 -2.5 -10.5 phosphogluconate dehydratase compare
Atu4505 -2.4 -12.1 LacI family transcriptional regulator compare
Atu1455 -2.3 -4.2 hypothetical protein compare
Atu0723 -2.0 -2.0 FAD dependent oxidoreductase compare
Atu1464 -2.0 -5.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu1457 -2.0 -1.8 hypothetical protein compare
Atu1417 -1.9 -8.1 enoyl-CoA hydratase compare
Atu3731 -1.9 -8.1 5-formyltetrahydrofolate cyclo-ligase compare
Atu0606 -1.9 -3.3 hypothetical protein compare
Atu1620 -1.9 -10.9 triosephosphate isomerase compare
Atu3730 -1.8 -2.7 hypothetical protein compare
Atu0035 -1.8 -10.7 phosphoenolpyruvate carboxykinase compare
Atu1462 -1.6 -11.0 glycine cleavage system protein P2 compare
Atu1463 -1.5 -4.9 glycine cleavage system component H compare
Atu0786 -1.5 -5.4 peptidase, family M16 compare
Atu5451 -1.5 -1.6 hypothetical protein compare
Atu0535 -1.5 -6.1 hypothetical protein compare
Atu0031 -1.4 -1.5 PTS system, IIA component compare
Atu0608 -1.4 -10.7 transcriptional regulator compare
Atu0607 -1.4 -8.8 isocitrate lyase compare
Atu6138 -1.3 -6.2 Repressor of the acc and arc operons compare
Atu2113 -1.3 -2.4 N-acetylmuramoyl-L-alanine amidase compare
Atu1685 -1.3 -1.4 hypothetical protein compare
Atu1566 -1.2 -1.6 hypothetical protein compare
Atu1810 -1.2 -1.6 hypothetical protein compare
Atu5125 -1.2 -4.3 GntR family transcriptional regulator compare
Atu0592 -1.2 -4.5 ABC transporter, membrane spanning protein compare
Atu2205 -1.2 -5.4 transcriptional regulator, MarR family compare
Atu0434 -1.2 -2.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0422 -1.1 -1.4 ABC transporter, membrane spanning protein compare
Atu8162 -1.1 -1.5 hypothetical protein compare
Atu0421 -1.1 -1.5 ABC transporter, membrane spanning protein compare
Atu8115 -1.1 -3.1 Hypothetical Protein compare
Atu4364 -1.1 -6.6 LacI family transcriptional regulator compare
Atu4346 -1.1 -3.8 hypothetical protein compare
Atu1445 -1.0 -3.0 two component sensor kinase compare
Atu1028 -1.0 -2.5 hypothetical protein compare
Atu3486 -1.0 -2.7 DeoR family transcriptional regulator compare
Atu0769 -0.9 -1.2 protoheme IX farnesyltransferase compare
Atu1327 -0.9 -3.0 NADH-ubiquinone oxidoreductase compare
Atu2801 -0.9 -2.7 precorrin-2 C20 methyltransferase compare
Atu0361 -0.9 -2.3 transcriptional regulator compare
Atu2035 -0.9 -3.9 acetolactate synthase, small subunit compare
Atu2640 -0.9 -3.7 hypothetical protein compare
Atu0354 -0.9 -2.1 ferric uptake regulator compare
Atu3337 -0.8 -4.6 LacI family transcriptional regulator compare
Atu0533 -0.8 -3.6 putative inhibitor of septum formation compare
Atu2532 -0.8 -1.9 transcriptional regulator, MarR family compare
Atu0664 -0.8 -5.3 transcriptional regulator, LysR family compare
Atu1439 -0.8 -2.0 hypothetical protein compare
Atu2606 -0.8 -3.3 transcriptional regulator, GntR family compare
Atu8053 -0.8 -1.7 hypothetical protein compare
Atu4148 -0.8 -3.6 UDP-glucuronic acid epimerase compare
Atu3289 -0.8 -2.2 thiamine-phosphate pyrophosphorylase compare
Atu3598 -0.8 -1.2 thiol:disulfide interchange protein compare
Atu0205 -0.8 -5.5 methylmalonate-semialdehyde dehydrogenase compare
Atu2209 -0.8 -2.5 pyrroline-5-carboxylate reductase compare
Atu2796 -0.8 -3.8 precorrin-4 C11-methyltransferase compare
Atu0768 -0.8 -5.1 cytochrome-c oxidase chain I compare
Atu2745 -0.8 -5.8 acetyl-coenzyme A synthetase compare
Atu1904 -0.8 -2.3 transcriptional regulator compare
Atu1323 -0.8 -2.5 hypothetical protein compare
Atu2376 -0.8 -0.6 hypothetical protein compare
Atu3759 -0.8 -1.5 hypothetical protein compare
Atu3485 -0.8 -5.5 short chain dehydrogenase compare
Atu1163 -0.8 -1.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3963 -0.8 -4.4 GntR family transcriptional regulator compare
Atu0703 -0.7 -2.6 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0846 -0.7 -3.3 transcriptional regulator, MarR family compare
Atu0777 -0.7 -0.9 hypothetical protein compare
Atu3167 -0.7 -5.7 tagatose 6-phosphate kinase compare
Atu4176 -0.7 -3.3 hypothetical protein compare
Atu6098 -0.7 -0.6 transcriptional regulator, HTH family compare
Atu4232 -0.7 -3.3 GntR family transcriptional regulator compare
Atu2803 -0.7 -2.3 Cobalamin biosynthesis associated protein compare
Atu3162 -0.7 -4.9 LacI family transcriptional regulator compare
Atu4217 -0.7 -0.9 TetR family transcriptional regulator compare
Atu1902 -0.7 -2.8 transketolase compare
Atu4514 -0.7 -2.6 RpiR family transcriptional regulator compare
Atu1103 -0.7 -1.5 rRNA-adenine N6,N6-dimethyltransferase compare
Atu8018 -0.7 -0.9 hypothetical protein compare
Atu4685 -0.7 -3.8 LacI family transcriptional regulator compare
Atu3732 -0.7 -4.1 hemolysin compare
Atu0025 -0.7 -1.0 hypothetical protein compare
Atu0876 -0.7 -0.9 superoxide dismutase compare
Atu1535 -0.7 -1.2 cytochrome c oxidase, FixQ chain compare
Atu0677 -0.7 -1.4 hypothetical protein compare
Atu2200 -0.7 -2.1 cold shock protein compare
Atu0188 -0.7 -2.2 ABC transporter, membrane spanning protein (peptide) compare
Atu3572 -0.7 -4.1 transcriptional regulator compare
Atu0845 -0.7 -3.1 hypothetical protein compare
Atu0419 -0.7 -1.2 two component sensor kinase compare
Atu2821 -0.7 -3.1 transcriptional regulator, GntR family compare
Atu4613 -0.7 -5.0 glycosyltransferase compare
Atu1098 -0.7 -1.1 hypothetical protein compare
Atu2237 -0.7 -2.7 cytochrome c1 compare
Atu0770 -0.7 -3.8 cytochrome C oxidase assembly protein compare
Atu1774 -0.7 -3.3 ABC transporter, substrate binding protein (peptide) compare
Atu3219 -0.7 -4.2 dihydroxy-acid dehydratase compare
Atu0152 -0.6 -1.1 hypothetical protein compare
Atu2800 -0.6 -1.6 precorrin-3B C17-methyltransferase compare
Atu2163 -0.6 -0.9 hypothetical protein compare
Atu4541 -0.6 -2.1 carboxymuconolactone decarboxylase compare
Atu0190 -0.6 -3.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu5045 -0.6 -1.6 hypothetical protein compare
Atu4053 -0.6 -0.9 succinoglycan biosynthesis protein compare
Atu0795 -0.6 -1.8 hypothetical protein compare
Atu0593 -0.6 -3.6 ABC transporter, membrane spanning protein compare
Atu2684 -0.6 -0.8 hypothetical protein compare
Atu3727 -0.6 -2.1 hypothetical protein compare
Atu1447 -0.6 -1.4 two component sensor kinase compare
Atu2406 -0.6 -2.2 hypothetical protein compare
Atu0479 -0.6 -2.2 ABC transporter, substrate binding protein (amino acid) compare
Atu0663 -0.6 -4.0 hypothetical protein compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source Lactulose in Agrobacterium fabrum C58

For carbon source Lactulose across organisms