Experiment set7IT015 for Agrobacterium fabrum C58

Compare to:

D-Trehalose dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
Atu0099 -6.8 -12.8 prephenate dehydratase compare
Atu3707 -6.8 -4.7 phosphoserine aminotransferase compare
Atu1687 -6.7 -11.2 anthranilate phosphoribosyltransferase compare
Atu0679 -6.4 -7.6 ATP phosphoribosyltransferase compare
Atu2036 -6.4 -17.0 acetolactate synthase III, large subunit compare
Atu0537 -6.3 -7.5 histidinol dehydrogenase compare
Atu2274 -6.3 -12.0 cation efflux system protein compare
Atu3706 -6.3 -10.5 D-3-phosphoglycerate dehydrogenase compare
Atu2709 -6.2 -21.5 3-isopropylmalate dehydratase, large subunit compare
Atu0486 -6.1 -5.9 dihydroorotate dehydrogenase compare
Atu0038 -6.1 -7.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2264 -6.1 -15.2 2-isopropylmalate synthase compare
Atu0432 -6.1 -11.6 O-succinylhomoserine sulfhydrylase compare
Atu1845 -6.0 -6.4 phosphoribosylformylglycinamidine synthase I compare
Atu1205 -6.0 -16.6 threonine dehydratase compare
Atu2791 -6.0 -10.8 3-isopropylmalate dehydrogenase compare
Atu0678 -6.0 -7.1 histidyl-tRNA synthetase compare
Atu2289 -6.0 -21.2 anthranilate synthase component I and II compare
Atu1588 -5.9 -12.4 homoserine dehydrogenase compare
Atu1075 -5.9 -10.6 amidophosphoribosyltransferase compare
Atu2726 -5.9 -25.8 pyruvate carboxylase compare
Atu1844 -5.9 -5.6 Phosphoribosylformylglycinamidine synthetase compare
Atu3783 -5.8 -19.8 glutamate synthase subunit beta compare
Atu0043 -5.8 -4.0 imidazoleglycerol-phosphate dehydratase compare
Atu0400 -5.8 -4.0 orotate phosphoribosyltransferase compare
Atu3754 -5.7 -6.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1308 -5.7 -6.8 aspartate carbamoyl transferase catalytic subunit compare
Atu2155 -5.7 -24.5 methionine synthase compare
Atu2747 -5.6 -16.5 hypothetical protein compare
Atu1688 -5.6 -6.7 indole-3-glycerol-phosphate synthase compare
Atu3885 -5.6 -11.9 inositol monophosphatase compare
Atu3784 -5.5 -30.0 glutamate synthase large subunit compare
Atu2040 -5.5 -7.4 phosphoserine phosphatase compare
Atu0647 -5.4 -7.4 phosphoribosylamine--glycine ligase compare
Atu0041 -5.4 -3.7 glutamine amidotransferase compare
Atu1850 -5.4 -5.0 phosphoribosylformylglycinamidine synthetase II compare
Atu2650 -5.4 -15.2 glycerol-3-phosphate dehydrogenase compare
Atu1140 -5.4 -7.6 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1750 -5.4 -6.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu2718 -5.3 -10.0 homoserine O-succinyltransferase compare
Atu3739 -5.3 -4.3 phosphoglycerate kinase compare
Atu1307 -5.3 -6.2 dihydroorotase compare
Atu0298 -5.2 -6.2 orotidine 5 compare
Atu3469 -5.2 -3.6 phosphoglyceromutase compare
Atu1141 -5.1 -8.6 Phosphoribosylglycinamide synthetase compare
Atu1359 -5.0 -2.1 dnaK deletion suppressor protein compare
Atu0039 -4.9 -3.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu0399 -4.3 -6.5 dihydroorotase compare
Atu2790 -4.2 -3.7 3-isopropylmalate dehydratase, small subunit compare
Atu1030 -4.1 -2.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2015 -3.7 -14.8 aminotransferase compare
Atu0040 -3.7 -2.1 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0017 -3.7 -5.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu4075 -3.6 -9.6 glycogen synthase compare
Atu2548 -3.5 -19.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0598 -3.5 -13.0 phosphogluconate dehydratase compare
Atu0184 -3.5 -4.4 glucokinase compare
Atu3755 -3.5 -4.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0185 -3.5 -6.3 methylglyoxal synthase compare
Atu0641 -3.5 -6.1 hypothetical protein compare
Atu1686 -3.5 -20.0 peptidyl-prolyl cis-trans isomerse D compare
Atu1456 -3.4 -16.4 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3482 -3.1 -12.1 pantoate--beta-alanine ligase compare
Atu1620 -3.0 -11.6 triosephosphate isomerase compare
Atu3483 -2.9 -6.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1454 -2.9 -9.3 siroheme synthase compare
Atu0593 -2.7 -8.6 ABC transporter, membrane spanning protein compare
Atu1589 -2.6 -7.2 aminotransferase, class I compare
Atu0591 -2.4 -14.1 ABC transporter, substrate binding protein (alpha-glucoside) compare
Atu2123 -2.4 -6.3 methylenetetrahydrofolate reductase compare
Atu0346 -2.4 -3.6 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1685 -2.3 -2.1 hypothetical protein compare
Atu0723 -2.3 -2.7 FAD dependent oxidoreductase compare
Atu1446 -2.3 -3.4 two component response regulator compare
Atu0422 -2.3 -3.0 ABC transporter, membrane spanning protein compare
Atu1219 -2.2 -2.3 hypothetical protein compare
Atu0595 -2.1 -11.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu0029 -2.0 -8.1 S-adenosylhomocysteine hydrolase compare
Atu1455 -2.0 -5.0 hypothetical protein compare
Atu8054 -1.9 -1.1 hypothetical protein compare
Atu0592 -1.9 -6.2 ABC transporter, membrane spanning protein compare
Atu1604 -1.7 -11.9 poly-beta-hydroxybutyrate synthase compare
Atu0332 -1.7 -9.5 RNA polymerase sigma-54 factor compare
Atu0769 -1.7 -2.2 protoheme IX farnesyltransferase compare
Atu1163 -1.7 -2.7 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0030 -1.6 -2.5 phosphocarrier protein HPr compare
Atu0594 -1.6 -9.8 alpha-glucosidase conserved
Atu3731 -1.6 -5.8 5-formyltetrahydrofolate cyclo-ligase compare
Atu1457 -1.6 -2.1 hypothetical protein compare
Atu2209 -1.5 -4.9 pyrroline-5-carboxylate reductase compare
Atu1462 -1.5 -9.4 glycine cleavage system protein P2 compare
Atu8115 -1.4 -3.7 Hypothetical Protein compare
Atu1464 -1.4 -5.9 glycine cleavage system T protein, aminomethyltransferase compare
Atu5142 -1.4 -2.0 hypothetical protein compare
Atu4613 -1.3 -10.2 glycosyltransferase compare
Atu1463 -1.3 -6.2 glycine cleavage system component H compare
Atu4711 -1.3 -4.9 two component sensor kinase compare
Atu4616 -1.3 -1.4 dTDP-4-dehydrorhamnose reductase compare
Atu0361 -1.2 -3.5 transcriptional regulator compare
Atu0031 -1.2 -1.5 PTS system, IIA component compare
Atu4618 -1.2 -7.5 dTDP-rhamnose-3,5-epimerase compare
Atu1445 -1.2 -3.0 two component sensor kinase compare
Atu4773 -1.2 -1.8 two component response regulator compare
Atu4166 -1.2 -1.6 UDP-glucose 4-epimerase compare
Atu0188 -1.1 -2.3 ABC transporter, membrane spanning protein (peptide) compare
Atu2728 -1.1 -4.0 beta (1-->2) glucan export ATP-binding protein compare
Atu4614 -1.0 -6.7 glycosyltransferase compare
Atu0354 -1.0 -1.6 ferric uptake regulator compare
Atu3496 -1.0 -4.7 hypothetical protein compare
Atu4617 -1.0 -7.2 dTDP-D-glucose-4,6-dehydratase compare
Atu4317 -1.0 -2.2 TetR family transcriptional regulator compare
Atu4173 -1.0 -2.7 phosphoenolpyruvate-protein phosphotransferase compare
Atu1952 -1.0 -1.5 hypothetical protein compare
Atu6165 -1.0 -0.9 hypothetical protein compare
Atu2554 -0.9 -1.7 lysyl-tRNA synthetase compare
Atu0421 -0.9 -1.3 ABC transporter, membrane spanning protein compare
Atu2376 -0.9 -0.6 hypothetical protein compare
Atu4615 -0.8 -5.4 glucose-1-phosphate thymidylyltransferase compare
Atu2205 -0.8 -2.1 transcriptional regulator, MarR family compare
Atu5125 -0.8 -2.7 GntR family transcriptional regulator compare
Atu1572 -0.8 -5.6 hydrolase compare
Atu3311 -0.8 -6.8 phosphomannose isomerase compare
Atu2183 -0.8 -6.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2192 -0.8 -1.5 hypothetical protein compare
Atu0971 -0.8 -3.3 two component sensor kinase compare
Atu0435 -0.7 -1.7 tRNA-Gly compare
Atu2640 -0.7 -3.4 hypothetical protein compare
Atu1028 -0.7 -1.5 hypothetical protein compare
Atu0300 -0.7 -4.1 methyltransferase compare
Atu2439 -0.7 -0.9 hypothetical protein compare
Atu8035 -0.7 -1.6 hypothetical protein compare
Atu2115 -0.7 -4.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu4155 -0.7 -4.0 aliphatic sulfonate ABC transporter permease compare
Atu1062 -0.7 -1.6 phosphatidylserine synthase compare
Atu2831 -0.7 -3.5 glucose inhibited division protein A compare
Atu0565 -0.7 -2.3 hypothetical protein compare
Atu3426 -0.7 -4.6 sulfonate monooxygenase compare
Atu2406 -0.6 -1.5 hypothetical protein compare
Atu0876 -0.6 -1.3 superoxide dismutase compare
Atu2462 -0.6 -1.5 hypothetical protein compare
Atu1056 -0.6 -3.2 hypothetical protein compare
Atu3730 -0.6 -1.4 hypothetical protein compare
Atu6114 -0.6 -0.9 hypothetical protein compare
Atu0434 -0.6 -1.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3289 -0.6 -2.2 thiamine-phosphate pyrophosphorylase compare
Atu4477 -0.6 -4.0 TetR family transcriptional regulator compare
Atu4407 -0.6 -1.5 periplasmic nitrate reductase, NapD protein compare
Atu4418 -0.6 -2.6 glutaryl-CoA dehydrogenase compare
Atu2555 -0.6 -1.7 L-lysine 2,3-aminomutase compare
Atu2020 -0.6 -2.3 transcriptional regulator, TetR family compare
Atu0977 -0.6 -2.0 serine protease DO-like protease compare
Atu1076 -0.6 -2.2 colicin V production protein compare
Atu1550 -0.6 -2.7 polypeptide deformylase compare
Atu8096 -0.6 -1.4 hypothetical protein compare
Atu0479 -0.6 -2.3 ABC transporter, substrate binding protein (amino acid) compare
Atu0189 -0.6 -1.4 ABC transporter, membrane spanning protein (peptide) compare
Atu1774 -0.6 -3.3 ABC transporter, substrate binding protein (peptide) compare
Atu2379 -0.6 -3.6 phosphomannomutase compare
Atu0141 -0.6 -1.1 cytochrome O ubiquinol oxidase subunit I compare
Atu0153 -0.6 -2.1 transcriptional regulator, Fur family compare
Atu1739 -0.6 -3.2 permease compare
Atu0237 -0.6 -2.9 hypothetical protein compare
Atu0943 -0.6 -1.5 hypothetical protein compare
Atu0926 -0.6 -2.2 hypothetical protein compare
Atu6159 -0.6 -1.8 hypothetical protein compare
Atu3342 -0.6 -3.0 trehalose utilization-like protein compare
Atu6112 -0.5 -2.0 conserved hypothetical protein compare
Atu0142 -0.5 -1.2 cytochrome o ubiquinol oxidase subunit II compare
Atu3121 -0.5 -0.9 cold shock protein compare
Atu0535 -0.5 -2.2 hypothetical protein compare
Atu2207 -0.5 -2.3 two component sensor kinase compare
Atu2472 -0.5 -1.0 hypothetical protein compare
Atu2130 -0.5 -2.4 hypothetical protein compare
Atu3740 -0.5 -3.0 fructose bisphosphate aldolase compare
Atu0382 -0.5 -1.5 hypothetical protein compare
Atu0894 -0.5 -2.0 ABC transporter, membrane spanning protein compare
Atu4779 -0.5 -1.7 hypothetical protein compare
Atu3727 -0.5 -1.9 hypothetical protein compare
Atu1714 -0.5 -1.1 exonuclease III compare
Atu2770 -0.5 -2.9 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu4077 -0.5 -3.1 glycogen branching protein compare
Atu0846 -0.5 -1.8 transcriptional regulator, MarR family compare
Atu3485 -0.5 -3.7 short chain dehydrogenase compare
Atu3353 -0.5 -3.5 mannose-1-phosphate guanylyltransferase compare
Atu8176 -0.5 -1.4 hypothetical protein compare
Atu2710 -0.5 -2.8 hypothetical protein compare
Atu0895 -0.5 -1.3 ABC transporter, substrate binding protein compare
Atu4072 -0.5 -1.0 nodulation protein N compare
Atu2127 -0.5 -2.9 L-carnitine dehydratase compare
Atu3343 -0.5 -2.9 trehalose utilization-like protein compare
Atu8020 -0.5 -2.5 hypothetical protein compare
Atu0103 -0.5 -3.7 penicillin-binding protein compare
Atu1339 -0.5 -1.4 ribonuclease E compare
Atu3340 -0.5 -3.3 trehalose/maltose ABC transporter permease compare
Atu3732 -0.5 -3.4 hemolysin compare
Atu3331 -0.5 -2.6 hypothetical protein compare
Atu2489 -0.5 -2.9 hypothetical protein compare
Atu4137 -0.5 -1.5 hypothetical protein compare
Atu2067 -0.5 -0.6 hypothetical protein compare
Atu1629 -0.5 -0.9 transcriptional regulator, ArsR family compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Trehalose dihydrate in Agrobacterium fabrum C58

For carbon source D-Trehalose dihydrate across organisms