Experiment set7IT012 for Pseudomonas simiae WCS417

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

200 most important genes:

  gene name fitness t score description  
PS417_24155 -4.6 -6.4 ATP-binding protein compare
PS417_02415 -3.4 -8.3 phosphoserine phosphatase compare
PS417_20160 -3.1 -4.5 cysteine synthase compare
PS417_05595 -3.1 -9.3 ornithine carbamoyltransferase compare
PS417_01605 -2.9 -2.8 phosphoglycerate mutase compare
PS417_01575 -2.9 -6.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_20985 -2.9 -4.5 porin compare
PS417_27040 -2.8 -4.1 3-phosphoglycerate dehydrogenase compare
PS417_01570 -2.8 -3.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_24745 -2.7 -6.1 gamma-glutamyl phosphate reductase compare
PS417_23770 -2.6 -2.9 exodeoxyribonuclease V subunit alpha compare
PS417_27795 -2.6 -1.3 orotate phosphoribosyltransferase compare
PS417_01855 -2.6 -3.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_23545 -2.5 -3.3 gamma-glutamyl kinase compare
PS417_07170 -2.5 -4.7 hypothetical protein compare
PS417_26730 -2.4 -1.2 pyrroline-5-carboxylate reductase compare
PS417_06375 -2.4 -1.2 deoxycytidine triphosphate deaminase compare
PS417_01565 -2.4 -6.9 imidazole glycerol phosphate synthase compare
PS417_03560 -2.3 -3.7 GTP-binding protein compare
PS417_20125 -2.3 -6.6 phosphoribosylglycinamide formyltransferase compare
PS417_02005 -2.2 -10.4 glutamate synthase compare
PS417_01580 -2.1 -1.8 imidazole glycerol phosphate synthase compare
PS417_08245 -2.0 -2.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_02000 -2.0 -10.3 glutamate synthase compare
PS417_22450 -2.0 -2.1 ATP-dependent DNA helicase RuvA compare
PS417_27195 -2.0 -2.1 N-acetylglutamate synthase compare
PS417_08125 -1.9 -1.8 prephenate dehydratase compare
PS417_20635 -1.9 -1.5 ABC transporter ATP-binding protein compare
PS417_11175 -1.9 -4.0 AraC family transcriptional regulator compare
PS417_04415 -1.8 -6.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_06200 -1.8 -8.8 protein-PII uridylyltransferase compare
PS417_04380 -1.8 -2.0 ABC transporter permease compare
PS417_21125 -1.7 -5.4 phosphoadenosine phosphosulfate reductase compare
PS417_00550 -1.7 -1.5 hypothetical protein compare
PS417_23950 -1.7 -2.5 polynucleotide phosphorylase/polyadenylase compare
PS417_13510 -1.7 -1.7 polyketide cyclase compare
PS417_01560 -1.7 -2.5 imidazoleglycerol-phosphate dehydratase compare
PS417_22690 -1.6 -2.9 phosphogluconate dehydratase compare
PS417_02510 -1.6 -5.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_01850 -1.6 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23775 -1.6 -2.6 exodeoxyribonuclease V subunit beta compare
PS417_28220 -1.5 -2.9 LysR family transcriptional regulator compare
PS417_21630 -1.5 -2.2 magnesium transporter compare
PS417_26995 -1.5 -7.9 phosphoserine phosphatase compare
PS417_23810 -1.5 -9.7 acetolactate synthase 3 catalytic subunit compare
PS417_00180 -1.5 -3.8 tryptophan synthase subunit alpha compare
PS417_23805 -1.5 -5.1 acetolactate synthase 3 regulatory subunit compare
PS417_00705 -1.5 -1.5 MarR family transcriptional regulator compare
PS417_19605 -1.4 -1.5 hypothetical protein compare
PS417_21655 -1.4 -0.9 aspartate kinase compare
PS417_04420 -1.4 -7.1 histidinol dehydrogenase compare
PS417_04410 -1.3 -2.3 hypothetical protein compare
PS417_16465 -1.3 -6.3 sirohydrochlorin ferrochelatase compare
PS417_13010 -1.3 -2.5 alpha/beta hydrolase compare
PS417_10245 -1.3 -2.0 hypothetical protein compare
PS417_23800 -1.3 -6.9 ketol-acid reductoisomerase compare
PS417_17780 -1.3 -0.9 Ais protein compare
PS417_08220 -1.2 -1.3 epimerase compare
PS417_12290 -1.2 -5.3 sulfite reductase compare
PS417_05695 -1.2 -4.3 transcriptional regulator compare
PS417_08230 -1.2 -2.9 lipopolysaccharide biosynthesis protein RfbH compare
PS417_27435 -1.1 -4.3 polyphosphate kinase compare
PS417_26175 -1.1 -0.8 sarcosine oxidase subunit gamma compare
PS417_26230 -1.1 -2.7 electron transfer flavoprotein subunit alpha compare
PS417_10305 -1.1 -2.5 hypothetical protein compare
PS417_08540 -1.1 -2.9 RNA helicase compare
PS417_19835 -1.1 -1.5 flagellar biosynthesis protein FliS compare
PS417_26890 -1.1 -5.3 dihydroxy-acid dehydratase compare
PS417_08205 -1.1 -3.0 acetyltransferase compare
PS417_27935 -1.1 -1.4 type VI secretion protein compare
PS417_18585 -1.1 -3.5 3-isopropylmalate dehydrogenase compare
PS417_20965 -1.1 -4.6 histidine kinase compare
PS417_22520 -1.0 -2.1 histidine kinase compare
PS417_08190 -1.0 -7.2 membrane protein compare
PS417_12015 -1.0 -1.6 phosphoglycerate mutase compare
PS417_02805 -1.0 -1.6 urease subunit gamma compare
PS417_14805 -1.0 -1.8 AraC family transcriptional regulator compare
PS417_26280 -1.0 -2.2 NADPH:quinone reductase compare
PS417_01635 -1.0 -3.0 nitrogen regulation protein NR(I) compare
PS417_07595 -1.0 -3.9 PasA protein compare
PS417_19095 -1.0 -1.5 hypothetical protein compare
PS417_08135 -1.0 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01965 -1.0 -1.8 fimbriae biosynthesis protein compare
PS417_21480 -1.0 -1.2 23S rRNA pseudouridylate synthase compare
PS417_08410 -0.9 -2.4 hypothetical protein compare
PS417_03260 -0.9 -1.6 5S ribosomal RNA compare
PS417_27640 -0.9 -1.5 TetR family transcriptional regulator compare
PS417_14725 -0.9 -4.2 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
PS417_09235 -0.9 -1.1 molecular chaperone compare
PS417_22620 -0.9 -3.1 pyruvate kinase compare
PS417_20030 -0.9 -2.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_17610 -0.9 -1.4 AsnC family transcriptional regulator compare
PS417_06710 -0.9 -1.5 beta-ketoadipyl CoA thiolase compare
PS417_12840 -0.9 -2.9 TetR family transcriptional regulator compare
PS417_03100 -0.9 -0.8 pilus assembly protein compare
PS417_03045 -0.9 -1.7 hypothetical protein compare
PS417_14710 -0.9 -1.4 isochorismatase compare
PS417_01825 -0.9 -2.2 chemotaxis protein compare
PS417_02555 -0.9 -7.5 exoribonuclease R compare
PS417_07710 -0.9 -5.4 membrane protein compare
PS417_18600 -0.9 -2.0 isopropylmalate isomerase compare
PS417_12855 -0.9 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_06680 -0.9 -5.6 nuclease PIN compare
PS417_16055 -0.9 -2.0 biopolymer transporter TolR compare
PS417_15705 -0.9 -1.4 nitrate reductase compare
PS417_09085 -0.9 -1.2 hypothetical protein compare
PS417_02560 -0.9 -1.3 23S rRNA methyltransferase compare
PS417_24675 -0.9 -1.3 lipoyl synthase compare
PS417_19645 -0.9 -1.7 chemotaxis protein compare
PS417_13800 -0.9 -2.6 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_27585 -0.8 -1.7 diaminopimelate epimerase compare
PS417_00345 -0.8 -2.2 copper-binding protein compare
PS417_11810 -0.8 -1.4 oxidoreductase compare
PS417_28050 -0.8 -2.3 hypothetical protein compare
PS417_03875 -0.8 -1.7 membrane protein compare
PS417_22935 -0.8 -2.1 hypothetical protein compare
PS417_26740 -0.8 -4.7 homoserine acetyltransferase compare
PS417_04375 -0.8 -1.7 ABC transporter ATP-binding protein compare
PS417_00185 -0.8 -2.0 tryptophan synthase subunit beta compare
PS417_04585 -0.8 -1.5 hypothetical protein compare
PS417_12845 -0.8 -2.2 NAD(P)H dehydrogenase compare
PS417_24345 -0.8 -3.2 ubiquinol oxidase subunit II compare
PS417_08185 -0.8 -3.0 glycosyl transferase compare
PS417_18760 -0.8 -2.9 hypothetical protein compare
PS417_02070 -0.8 -0.9 membrane protein compare
PS417_19275 -0.8 -1.3 hypothetical protein compare
PS417_18310 -0.8 -1.4 hypothetical protein compare
PS417_13755 -0.8 -1.7 oxidoreductase compare
PS417_19675 -0.8 -2.5 chemotaxis protein CheY compare
PS417_12660 -0.8 -0.9 hypothetical protein compare
PS417_26985 -0.8 -3.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_23910 -0.8 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_22815 -0.8 -4.4 permease compare
PS417_17380 -0.8 -1.4 membrane protein compare
PS417_18860 -0.8 -3.4 transcriptional regulator compare
PS417_04270 -0.8 -4.0 ribonuclease G compare
PS417_19350 -0.8 -1.8 GTP cyclohydrolase compare
PS417_08155 -0.8 -1.5 integration host factor subunit beta compare
PS417_18070 -0.7 -0.9 general secretion pathway protein GspH compare
PS417_08025 -0.7 -0.8 acetylornithine aminotransferase compare
PS417_16715 -0.7 -1.3 DoxX family protein compare
PS417_23380 -0.7 -1.7 cytochrome o ubiquinol oxidase subunit III compare
PS417_01640 -0.7 -2.6 histidine kinase compare
PS417_16400 -0.7 -1.3 NAD(P)H-quinone oxidoreductase compare
PS417_02720 -0.7 -0.7 TetR family transcriptional regulator compare
PS417_02700 -0.7 -1.7 urease accessory protein UreG compare
PS417_06600 -0.7 -0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_00535 -0.7 -1.9 Holliday junction resolvase compare
PS417_14730 -0.7 -3.9 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
PS417_15710 -0.7 -1.6 nitrate reductase compare
PS417_25175 -0.7 -2.0 hypothetical protein compare
PS417_15695 -0.7 -3.1 molybdenum cofactor biosynthesis protein A compare
PS417_27940 -0.7 -1.0 type VI secretion protein compare
PS417_20705 -0.7 -2.2 cbb3-type cytochrome c oxidase subunit II compare
PS417_26445 -0.7 -2.0 ArsR family transcriptional regulator compare
PS417_21010 -0.7 -2.4 ribonuclease activity regulator protein RraA compare
PS417_00755 -0.7 -0.5 biofilm PGA synthesis protein PgaD compare
PS417_16560 -0.7 -1.3 GNAT family acetyltransferase compare
PS417_25650 -0.7 -2.3 anhydro-N-acetylmuramic acid kinase compare
PS417_08225 -0.7 -3.1 acetolactate synthase compare
PS417_20855 -0.7 -1.1 hypothetical protein compare
PS417_20775 -0.7 -3.3 coproporphyrinogen III oxidase compare
PS417_18560 -0.7 -2.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_12375 -0.7 -1.6 serine/threonine protein phosphatase compare
PS417_00975 -0.7 -1.1 hypothetical protein compare
PS417_04365 -0.7 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_21070 -0.7 -1.4 aconitate hydratase compare
PS417_25815 -0.7 -2.6 magnesium transporter ApaG compare
PS417_07305 -0.7 -1.0 3-beta hydroxysteroid dehydrogenase compare
PS417_14280 -0.7 -1.9 hypothetical protein compare
PS417_06355 -0.7 -2.4 protein-L-isoaspartate O-methyltransferase compare
PS417_18690 -0.7 -1.9 aromatic amino acid aminotransferase compare
PS417_04975 -0.7 -2.4 response regulator receiver protein compare
PS417_11400 -0.7 -1.3 phosphoglycerate mutase compare
PS417_05155 -0.7 -1.7 DNA polymerase III subunit chi compare
PS417_18040 -0.7 -1.2 general secretion pathway protein GspN compare
PS417_04180 -0.7 -1.7 GntR family transcriptional regulator compare
PS417_04185 -0.7 -1.8 hypothetical protein compare
PS417_03300 -0.7 -2.4 alanine acetyltransferase compare
PS417_00030 -0.6 -2.0 hypothetical protein compare
PS417_05815 -0.6 -2.8 recombinase RecA compare
PS417_26365 -0.6 -1.9 EmrB/QacA subfamily drug resistance transporter compare
PS417_17450 -0.6 -2.6 amino acid ABC transporter substrate-binding protein compare
PS417_03340 -0.6 -1.6 gluconate transporter compare
PS417_15400 -0.6 -1.0 hypothetical protein compare
PS417_12710 -0.6 -2.2 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) compare
PS417_18450 -0.6 -1.6 hydrolase compare
PS417_22580 -0.6 -1.9 membrane protein compare
PS417_05045 -0.6 -2.6 acetamidase compare
PS417_19650 -0.6 -2.4 chemotaxis protein CheW compare
PS417_05025 -0.6 -1.2 maleylacetoacetate isomerase compare
PS417_11760 -0.6 -2.0 Fis family transcriptional regulator compare
PS417_16950 -0.6 -1.7 fimbrial protein compare
PS417_03525 -0.6 -0.9 hypothetical protein compare
PS417_02270 -0.6 -1.9 carbamoyltransferase compare
PS417_27705 -0.6 -1.0 amino acid dehydrogenase compare
PS417_18425 -0.6 -1.2 sporulation protein compare
PS417_15860 -0.6 -3.1 chromate transporter compare
PS417_04875 -0.6 -1.1 molybdenum cofactor biosynthesis protein MoaE compare
PS417_10320 -0.6 -1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms