Experiment set7IT011 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x

200 most important genes:

  gene name fitness t score description  
PS417_08125 -5.4 -1.9 prephenate dehydratase compare
PS417_24155 -4.5 -6.8 ATP-binding protein compare
PS417_27795 -4.0 -1.4 orotate phosphoribosyltransferase compare
PS417_27040 -3.7 -3.7 3-phosphoglycerate dehydrogenase compare
PS417_22450 -3.5 -3.4 ATP-dependent DNA helicase RuvA compare
PS417_24745 -3.5 -5.8 gamma-glutamyl phosphate reductase compare
PS417_23545 -3.4 -3.3 gamma-glutamyl kinase compare
PS417_05595 -3.3 -7.8 ornithine carbamoyltransferase compare
PS417_27195 -3.2 -2.2 N-acetylglutamate synthase compare
PS417_20985 -3.2 -3.3 porin compare
PS417_28220 -3.2 -3.5 LysR family transcriptional regulator compare
PS417_04415 -3.2 -8.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_02415 -3.0 -6.6 phosphoserine phosphatase compare
PS417_02000 -2.9 -14.5 glutamate synthase compare
PS417_01850 -2.8 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_00180 -2.8 -5.3 tryptophan synthase subunit alpha compare
PS417_04420 -2.7 -12.3 histidinol dehydrogenase compare
PS417_23800 -2.7 -14.7 ketol-acid reductoisomerase compare
PS417_01605 -2.7 -1.9 phosphoglycerate mutase compare
PS417_26890 -2.6 -8.7 dihydroxy-acid dehydratase compare
PS417_02005 -2.6 -12.6 glutamate synthase compare
PS417_26730 -2.6 -1.3 pyrroline-5-carboxylate reductase compare
PS417_02510 -2.5 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_01565 -2.5 -6.5 imidazole glycerol phosphate synthase compare
PS417_23805 -2.5 -5.6 acetolactate synthase 3 regulatory subunit compare
PS417_00185 -2.4 -4.8 tryptophan synthase subunit beta compare
PS417_05975 -2.4 -1.2 chemotaxis protein CheW compare
PS417_23995 -2.4 -1.4 preprotein translocase subunit SecG compare
PS417_22690 -2.4 -4.6 phosphogluconate dehydratase compare
PS417_01575 -2.4 -5.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_12855 -2.3 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01855 -2.3 -4.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_18585 -2.3 -5.7 3-isopropylmalate dehydrogenase compare
PS417_27435 -2.3 -7.7 polyphosphate kinase compare
PS417_01560 -2.2 -3.9 imidazoleglycerol-phosphate dehydratase compare
PS417_26995 -2.1 -9.3 phosphoserine phosphatase compare
PS417_23950 -2.1 -2.2 polynucleotide phosphorylase/polyadenylase compare
PS417_18560 -2.1 -7.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_26745 -2.1 -6.1 methionine biosynthesis protein MetW compare
PS417_23810 -2.0 -10.3 acetolactate synthase 3 catalytic subunit compare
PS417_01580 -2.0 -2.0 imidazole glycerol phosphate synthase compare
PS417_18530 -2.0 -7.1 O-succinylhomoserine sulfhydrylase compare
PS417_04380 -2.0 -2.3 ABC transporter permease compare
PS417_08155 -1.9 -2.9 integration host factor subunit beta compare
PS417_06375 -1.9 -1.1 deoxycytidine triphosphate deaminase compare
PS417_20160 -1.8 -3.5 cysteine synthase compare
PS417_13510 -1.8 -1.8 polyketide cyclase compare
PS417_20125 -1.7 -3.5 phosphoribosylglycinamide formyltransferase compare
PS417_11175 -1.7 -1.7 AraC family transcriptional regulator compare
PS417_19675 -1.7 -5.2 chemotaxis protein CheY compare
PS417_00195 -1.7 -2.3 hypothetical protein compare
PS417_11180 -1.6 -4.2 TetR family transcriptional regulator compare
PS417_25715 -1.6 -4.0 anthranilate phosphoribosyltransferase compare
PS417_23770 -1.6 -2.3 exodeoxyribonuclease V subunit alpha compare
PS417_02555 -1.6 -11.4 exoribonuclease R compare
PS417_18055 -1.6 -1.4 general secretion pathway protein GspK compare
PS417_25725 -1.5 -8.1 anthranilate synthase component I compare
PS417_18595 -1.5 -3.7 3-isopropylmalate dehydratase compare
PS417_07170 -1.5 -2.8 hypothetical protein compare
PS417_23105 -1.5 -2.3 hypothetical protein compare
PS417_04385 -1.5 -5.4 organic solvent ABC transporter substrate-binding protein compare
PS417_23110 -1.5 -6.1 2-isopropylmalate synthase compare
PS417_26740 -1.4 -4.9 homoserine acetyltransferase compare
PS417_18600 -1.4 -2.6 isopropylmalate isomerase compare
PS417_10245 -1.4 -2.1 hypothetical protein compare
PS417_04650 -1.4 -1.7 D-alanine--D-alanine ligase compare
PS417_27835 -1.4 -6.0 endoribonuclease compare
PS417_06145 -1.4 -1.5 hypothetical protein compare
PS417_00550 -1.4 -1.4 hypothetical protein compare
PS417_25710 -1.4 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_17240 -1.3 -3.0 trigger factor compare
PS417_06645 -1.3 -7.1 RNA polymerase-associated protein RapA compare
PS417_02210 -1.3 -3.7 diguanylate cyclase compare
PS417_06680 -1.3 -6.7 nuclease PIN compare
PS417_22620 -1.2 -3.8 pyruvate kinase compare
PS417_21850 -1.2 -1.5 LysR family transcriptional regulator compare
PS417_16465 -1.2 -6.4 sirohydrochlorin ferrochelatase compare
PS417_08135 -1.2 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_06530 -1.2 -2.6 membrane protein compare
PS417_26685 -1.2 -2.6 hypothetical protein compare
PS417_16715 -1.2 -2.2 DoxX family protein compare
PS417_19645 -1.2 -2.0 chemotaxis protein compare
PS417_25720 -1.2 -3.4 anthranilate synthase component II compare
PS417_01570 -1.2 -1.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_07710 -1.1 -5.9 membrane protein compare
PS417_26695 -1.1 -1.0 uracil phosphoribosyltransferase compare
PS417_22695 -1.1 -7.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_26990 -1.1 -1.2 RNA pyrophosphohydrolase compare
PS417_08580 -1.1 -5.6 histidine kinase compare
PS417_09235 -1.1 -1.3 molecular chaperone compare
PS417_07165 -1.1 -2.9 dihydrodipicolinate synthase compare
PS417_27705 -1.1 -1.7 amino acid dehydrogenase compare
PS417_19955 -1.1 -2.1 hypothetical protein compare
PS417_22175 -1.1 -1.8 amino acid transporter LysE compare
PS417_21065 -1.0 -2.4 3-methylitaconate isomerase compare
PS417_14590 -1.0 -1.4 LysR family transcriptional regulator compare
PS417_26470 -1.0 -2.2 cytochrome C compare
PS417_18690 -1.0 -3.2 aromatic amino acid aminotransferase compare
PS417_12840 -1.0 -2.4 TetR family transcriptional regulator compare
PS417_24525 -1.0 -1.9 nuclease compare
PS417_19800 -1.0 -1.2 flagellar motor switch protein FliG compare
PS417_03560 -1.0 -2.1 GTP-binding protein compare
PS417_08540 -1.0 -2.7 RNA helicase compare
PS417_01030 -1.0 -1.4 glutamine ABC transporter substrate-binding protein compare
PS417_07595 -1.0 -3.4 PasA protein compare
PS417_16555 -1.0 -1.1 cupin compare
PS417_19755 -1.0 -1.5 flagellar motor switch protein FliM compare
PS417_08185 -1.0 -3.2 glycosyl transferase compare
PS417_04390 -1.0 -3.4 toluene tolerance protein compare
PS417_08335 -1.0 -2.0 hypothetical protein compare
PS417_05815 -0.9 -3.6 recombinase RecA compare
PS417_24535 -0.9 -1.9 membrane protein compare
PS417_13800 -0.9 -2.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_18425 -0.9 -1.8 sporulation protein compare
PS417_12290 -0.9 -4.9 sulfite reductase compare
PS417_00370 -0.9 -1.0 hypothetical protein compare
PS417_18450 -0.9 -3.3 hydrolase compare
PS417_04270 -0.9 -5.6 ribonuclease G compare
PS417_14805 -0.9 -1.3 AraC family transcriptional regulator compare
PS417_21125 -0.9 -5.3 phosphoadenosine phosphosulfate reductase compare
PS417_11400 -0.9 -1.5 phosphoglycerate mutase compare
PS417_12455 -0.9 -2.8 hydrolase compare
PS417_13075 -0.9 -1.3 hypothetical protein compare
PS417_21015 -0.9 -1.5 EstX protein compare
PS417_08515 -0.9 -1.2 hypothetical protein compare
PS417_05790 -0.8 -2.8 hypothetical protein compare
PS417_11585 -0.8 -1.9 LuxR family transcriptional regulator compare
PS417_18860 -0.8 -4.3 transcriptional regulator compare
PS417_00975 -0.8 -1.4 hypothetical protein compare
PS417_08990 -0.8 -2.1 ABC transporter substrate-binding protein compare
PS417_25780 -0.8 -2.7 molecular chaperone DnaJ compare
PS417_27035 -0.8 -2.1 FAD-linked oxidase compare
PS417_17070 -0.8 -1.8 RNA polymerase subunit sigma-24 compare
PS417_24575 -0.8 -1.1 hypothetical protein compare
PS417_01435 -0.8 -1.1 hypothetical protein compare
PS417_11810 -0.8 -1.8 oxidoreductase compare
PS417_23330 -0.8 -1.4 hypothetical protein compare
PS417_22300 -0.8 -1.2 LTXXQ domain protein compare
PS417_02720 -0.8 -0.8 TetR family transcriptional regulator compare
PS417_19600 -0.8 -0.9 exonuclease compare
PS417_19190 -0.8 -2.9 BolA family transcriptional regulator compare
PS417_08230 -0.8 -2.0 lipopolysaccharide biosynthesis protein RfbH compare
PS417_03145 -0.8 -1.3 acetyl-CoA acetyltransferase compare
PS417_10995 -0.8 -1.8 GntR family transcriptional regulator compare
PS417_08435 -0.8 -1.1 pilus assembly protein PilZ compare
PS417_21705 -0.8 -2.4 arginine N-succinyltransferase compare
PS417_10220 -0.8 -4.0 hypothetical protein compare
PS417_18020 -0.8 -1.6 hypothetical protein compare
PS417_21285 -0.8 -3.0 hypothetical protein compare
PS417_08675 -0.8 -4.4 molybdenum cofactor biosynthesis protein MoaA compare
PS417_10145 -0.8 -1.9 hypothetical protein compare
PS417_20610 -0.8 -1.1 hypothetical protein compare
PS417_26335 -0.8 -1.9 BetI family transcriptional regulator compare
PS417_22520 -0.8 -1.7 histidine kinase compare
PS417_06100 -0.8 -1.5 SAM-dependent methyltransferase compare
PS417_23775 -0.8 -1.4 exodeoxyribonuclease V subunit beta compare
PS417_08190 -0.8 -5.2 membrane protein compare
PS417_19805 -0.8 -2.6 flagellar M-ring protein FliF compare
PS417_08205 -0.7 -2.6 acetyltransferase compare
PS417_16560 -0.7 -1.3 GNAT family acetyltransferase compare
PS417_20665 -0.7 -4.1 hypothetical protein compare
PS417_27940 -0.7 -1.4 type VI secretion protein compare
PS417_27960 -0.7 -2.9 Hcp1 family type VI secretion system effector compare
PS417_04180 -0.7 -2.7 GntR family transcriptional regulator compare
PS417_02270 -0.7 -3.4 carbamoyltransferase compare
PS417_06620 -0.7 -0.9 hypothetical protein compare
PS417_10025 -0.7 -1.3 bacteriophage lambda NinG family protein compare
PS417_25380 -0.7 -2.0 hypothetical protein compare
PS417_19285 -0.7 -1.4 ankyrin compare
PS417_11770 -0.7 -1.3 pyruvate dehydrogenase compare
PS417_15930 -0.7 -2.9 thioredoxin reductase compare
PS417_22840 -0.7 -1.0 tRNA-Met compare
PS417_25825 -0.7 -2.1 sulfurtransferase compare
PS417_15095 -0.7 -1.5 hypothetical protein compare
PS417_19660 -0.7 -3.3 cobalamin biosynthesis protein CobQ compare
PS417_27205 -0.7 -2.3 adenylate cyclase compare
PS417_00045 -0.7 -1.7 glycerol acyltransferase compare
PS417_16400 -0.7 -1.6 NAD(P)H-quinone oxidoreductase compare
PS417_14045 -0.7 -3.3 alkyl hydroperoxide reductase compare
PS417_23910 -0.7 -2.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_20715 -0.7 -1.0 cytochrome Cbb3 compare
PS417_24430 -0.7 -1.0 3-dehydroquinate dehydratase compare
PS417_11060 -0.7 -1.6 transporter compare
PS417_08225 -0.7 -2.6 acetolactate synthase compare
PS417_22085 -0.7 -1.9 aldehyde dehydrogenase compare
PS417_14935 -0.7 -2.2 transposase compare
PS417_05500 -0.7 -2.2 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_06355 -0.7 -2.4 protein-L-isoaspartate O-methyltransferase compare
PS417_06540 -0.7 -1.2 membrane protein compare
PS417_06895 -0.7 -2.4 DNA-binding protein compare
PS417_04410 -0.7 -0.8 hypothetical protein compare
PS417_06600 -0.7 -0.7 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_27005 -0.7 -0.7 membrane protein compare
PS417_11670 -0.7 -2.1 multidrug transporter MATE compare
PS417_06845 -0.7 -0.8 lipoprotein compare
PS417_03075 -0.7 -2.1 hypothetical protein compare
PS417_09210 -0.7 -0.7 TetR family transcriptional regulator compare
PS417_02990 -0.7 -1.6 hypothetical protein compare
PS417_05695 -0.7 -2.5 transcriptional regulator compare
PS417_05120 -0.7 -1.2 RNA polymerase subunit sigma-24 compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms