Experiment set7IT010 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x

200 most important genes:

  gene name fitness t score description  
PS417_01605 -4.8 -3.2 phosphoglycerate mutase compare
PS417_27040 -4.5 -2.3 3-phosphoglycerate dehydrogenase compare
PS417_23995 -4.4 -1.5 preprotein translocase subunit SecG compare
PS417_08125 -4.2 -2.0 prephenate dehydratase compare
PS417_02415 -4.0 -8.2 phosphoserine phosphatase compare
PS417_24155 -4.0 -4.8 ATP-binding protein compare
PS417_27195 -3.9 -1.8 N-acetylglutamate synthase compare
PS417_24745 -3.6 -2.9 gamma-glutamyl phosphate reductase compare
PS417_04415 -3.5 -13.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_00180 -3.3 -3.8 tryptophan synthase subunit alpha compare
PS417_01580 -3.3 -1.3 imidazole glycerol phosphate synthase compare
PS417_05595 -3.1 -6.5 ornithine carbamoyltransferase compare
PS417_23800 -3.1 -13.3 ketol-acid reductoisomerase compare
PS417_01850 -2.9 -7.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_04420 -2.9 -10.2 histidinol dehydrogenase compare
PS417_22690 -2.9 -5.9 phosphogluconate dehydratase compare
PS417_02510 -2.9 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23810 -2.9 -13.4 acetolactate synthase 3 catalytic subunit compare
PS417_18595 -2.9 -3.7 3-isopropylmalate dehydratase compare
PS417_00185 -2.8 -6.5 tryptophan synthase subunit beta compare
PS417_26890 -2.8 -9.1 dihydroxy-acid dehydratase compare
PS417_23950 -2.7 -4.4 polynucleotide phosphorylase/polyadenylase compare
PS417_01855 -2.7 -3.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_01565 -2.7 -4.3 imidazole glycerol phosphate synthase compare
PS417_26730 -2.7 -1.2 pyrroline-5-carboxylate reductase compare
PS417_23545 -2.6 -2.8 gamma-glutamyl kinase compare
PS417_13305 -2.5 -2.0 hypothetical protein compare
PS417_01575 -2.5 -7.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01560 -2.5 -2.6 imidazoleglycerol-phosphate dehydratase compare
PS417_05975 -2.4 -1.1 chemotaxis protein CheW compare
PS417_18560 -2.4 -8.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_18585 -2.4 -5.3 3-isopropylmalate dehydrogenase compare
PS417_26695 -2.3 -1.4 uracil phosphoribosyltransferase compare
PS417_23805 -2.3 -5.1 acetolactate synthase 3 regulatory subunit compare
PS417_20985 -2.3 -4.8 porin compare
PS417_27435 -2.3 -5.7 polyphosphate kinase compare
PS417_04380 -2.3 -2.1 ABC transporter permease compare
PS417_18600 -2.3 -2.6 isopropylmalate isomerase compare
PS417_27795 -2.3 -1.2 orotate phosphoribosyltransferase compare
PS417_23770 -2.2 -3.0 exodeoxyribonuclease V subunit alpha compare
PS417_25715 -2.1 -6.2 anthranilate phosphoribosyltransferase compare
PS417_26745 -2.0 -4.6 methionine biosynthesis protein MetW compare
PS417_12855 -2.0 -5.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_07170 -2.0 -4.4 hypothetical protein compare
PS417_10245 -1.9 -2.6 hypothetical protein compare
PS417_18530 -1.9 -5.4 O-succinylhomoserine sulfhydrylase compare
PS417_02000 -1.9 -11.3 glutamate synthase compare
PS417_25710 -1.9 -1.6 indole-3-glycerol-phosphate synthase compare
PS417_26740 -1.8 -6.7 homoserine acetyltransferase compare
PS417_25725 -1.8 -10.6 anthranilate synthase component I compare
PS417_27835 -1.8 -5.8 endoribonuclease compare
PS417_27585 -1.8 -2.4 diaminopimelate epimerase compare
PS417_02005 -1.7 -8.4 glutamate synthase compare
PS417_20160 -1.7 -3.4 cysteine synthase compare
PS417_26995 -1.7 -8.1 phosphoserine phosphatase compare
PS417_02210 -1.7 -7.8 diguanylate cyclase compare
PS417_03560 -1.7 -3.2 GTP-binding protein compare
PS417_01570 -1.7 -2.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_19835 -1.6 -1.9 flagellar biosynthesis protein FliS compare
PS417_28220 -1.6 -2.3 LysR family transcriptional regulator compare
PS417_05445 -1.6 -1.8 DNA mismatch repair protein MutT compare
PS417_25720 -1.6 -3.6 anthranilate synthase component II compare
PS417_08245 -1.6 -1.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_27870 -1.5 -6.3 ATP-dependent DNA helicase RecG compare
PS417_23110 -1.5 -5.7 2-isopropylmalate synthase compare
PS417_27315 -1.5 -1.4 hypothetical protein compare
PS417_13800 -1.5 -3.1 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_08090 -1.4 -0.9 3-oxoacyl-ACP reductase compare
PS417_20125 -1.4 -3.7 phosphoribosylglycinamide formyltransferase compare
PS417_06375 -1.4 -0.9 deoxycytidine triphosphate deaminase compare
PS417_22450 -1.4 -2.4 ATP-dependent DNA helicase RuvA compare
PS417_08155 -1.4 -1.7 integration host factor subunit beta compare
PS417_18425 -1.4 -2.2 sporulation protein compare
PS417_00755 -1.3 -0.9 biofilm PGA synthesis protein PgaD compare
PS417_19675 -1.3 -2.7 chemotaxis protein CheY compare
PS417_08135 -1.3 -5.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_12535 -1.3 -2.6 nitrilase compare
PS417_14140 -1.3 -2.1 membrane protein compare
PS417_21695 -1.2 -3.8 succinylglutamate-semialdehyde dehydrogenase compare
PS417_02225 -1.2 -3.1 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_04375 -1.2 -2.0 ABC transporter ATP-binding protein compare
PS417_05160 -1.2 -1.0 DNA polymerase III subunit chi compare
PS417_08540 -1.2 -2.9 RNA helicase compare
PS417_08580 -1.1 -6.2 histidine kinase compare
PS417_03815 -1.1 -2.6 DNA transporter compare
PS417_01915 -1.1 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_05695 -1.1 -4.5 transcriptional regulator compare
PS417_11320 -1.1 -1.9 hypothetical protein compare
PS417_19805 -1.1 -2.5 flagellar M-ring protein FliF compare
PS417_02555 -1.1 -8.1 exoribonuclease R compare
PS417_18690 -1.1 -2.4 aromatic amino acid aminotransferase compare
PS417_04385 -1.0 -4.2 organic solvent ABC transporter substrate-binding protein compare
PS417_06895 -1.0 -4.0 DNA-binding protein compare
PS417_19095 -1.0 -1.3 hypothetical protein compare
PS417_07710 -1.0 -4.5 membrane protein compare
PS417_27940 -1.0 -1.6 type VI secretion protein compare
PS417_04585 -1.0 -1.5 hypothetical protein compare
PS417_07615 -1.0 -3.6 TetR family transcriptional regulator compare
PS417_11480 -1.0 -2.5 hypothetical protein compare
PS417_17350 -1.0 -2.1 copper resistance protein CopD compare
PS417_12840 -1.0 -3.1 TetR family transcriptional regulator compare
PS417_27800 -1.0 -3.9 exodeoxyribonuclease III compare
PS417_20635 -1.0 -1.0 ABC transporter ATP-binding protein compare
PS417_03385 -1.0 -1.1 flavin reductase compare
PS417_06645 -1.0 -5.6 RNA polymerase-associated protein RapA compare
PS417_19275 -1.0 -1.4 hypothetical protein compare
PS417_22085 -0.9 -2.1 aldehyde dehydrogenase compare
PS417_11175 -0.9 -2.1 AraC family transcriptional regulator compare
PS417_18040 -0.9 -1.5 general secretion pathway protein GspN compare
PS417_08195 -0.9 -5.0 hypothetical protein compare
PS417_08230 -0.9 -2.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_11585 -0.9 -2.5 LuxR family transcriptional regulator compare
PS417_16055 -0.9 -1.7 biopolymer transporter TolR compare
PS417_10665 -0.9 -1.6 hypothetical protein compare
PS417_04650 -0.9 -1.4 D-alanine--D-alanine ligase compare
PS417_26985 -0.9 -3.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_19505 -0.9 -2.2 2,4-diaminobutyrate 4-aminotransferase compare
PS417_04305 -0.9 -1.5 aspartate ammonia-lyase compare
PS417_26815 -0.9 -2.0 peptidase M16 compare
PS417_16560 -0.9 -1.6 GNAT family acetyltransferase compare
PS417_05500 -0.9 -1.6 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_03460 -0.9 -1.5 type III secretion protein HrpI compare
PS417_19800 -0.9 -1.9 flagellar motor switch protein FliG compare
PS417_11400 -0.9 -1.5 phosphoglycerate mutase compare
PS417_04390 -0.9 -2.9 toluene tolerance protein compare
PS417_22520 -0.9 -1.8 histidine kinase compare
PS417_26335 -0.9 -1.2 BetI family transcriptional regulator compare
PS417_21000 -0.9 -2.0 CrfX protein compare
PS417_26990 -0.9 -1.0 RNA pyrophosphohydrolase compare
PS417_07000 -0.9 -2.2 hypothetical protein compare
PS417_01590 -0.8 -1.4 polysaccharide deacetylase compare
PS417_12290 -0.8 -4.4 sulfite reductase compare
PS417_08435 -0.8 -1.0 pilus assembly protein PilZ compare
PS417_07470 -0.8 -1.2 hypothetical protein compare
PS417_15100 -0.8 -2.3 BatB protein compare
PS417_04225 -0.8 -2.5 conjugal transfer protein TraR compare
PS417_06530 -0.8 -2.2 membrane protein compare
PS417_03260 -0.8 -1.2 5S ribosomal RNA compare
PS417_19350 -0.8 -2.8 GTP cyclohydrolase compare
PS417_19285 -0.8 -1.3 ankyrin compare
PS417_10920 -0.8 -1.3 LysR family transcriptional regulator compare
PS417_28510 -0.8 -2.0 chromosome partitioning protein compare
PS417_22620 -0.8 -2.3 pyruvate kinase compare
PS417_20610 -0.8 -1.2 hypothetical protein compare
PS417_10025 -0.8 -1.3 bacteriophage lambda NinG family protein compare
PS417_11615 -0.8 -1.3 urea ABC transporter ATP-binding protein compare
PS417_08740 -0.8 -2.0 ribose-phosphate pyrophosphokinase compare
PS417_11340 -0.8 -1.6 prevent-host-death protein compare
PS417_11360 -0.8 -2.5 energy transducer TonB compare
PS417_01200 -0.8 -2.4 phosphoesterase compare
PS417_08620 -0.7 -0.8 hypothetical protein compare
PS417_13885 -0.7 -2.4 chemotaxis protein CheY compare
PS417_01080 -0.7 -2.4 acyl-CoA dehydrogenase compare
PS417_02815 -0.7 -2.3 urea ABC transporter ATP-binding protein compare
PS417_07455 -0.7 -1.0 glutamine amidotransferase compare
PS417_03995 -0.7 -2.4 Fe(II)-dependent oxygenase compare
PS417_10015 -0.7 -1.0 hypothetical protein compare
PS417_16465 -0.7 -3.8 sirohydrochlorin ferrochelatase compare
PS417_02975 -0.7 -3.0 3-dehydroquinate dehydratase compare
PS417_00550 -0.7 -0.9 hypothetical protein compare
PS417_07165 -0.7 -1.9 dihydrodipicolinate synthase compare
PS417_22050 -0.7 -2.7 ribonuclease BN compare
PS417_09235 -0.7 -0.9 molecular chaperone compare
PS417_06095 -0.7 -1.2 energy transducer TonB compare
PS417_18060 -0.7 -1.5 general secretion pathway protein GspJ compare
PS417_20720 -0.7 -1.9 cbb3-type cytochrome c oxidase subunit I compare
PS417_08185 -0.7 -2.2 glycosyl transferase compare
PS417_13175 -0.7 -1.1 iron transporter compare
PS417_23625 -0.7 -1.7 LysR family transcriptional regulator compare
PS417_07140 -0.7 -2.1 peptidase M48 compare
PS417_12695 -0.7 -1.7 mannitol dehydrogenase compare
PS417_19650 -0.7 -3.2 chemotaxis protein CheW compare
PS417_11810 -0.7 -1.2 oxidoreductase compare
PS417_24790 -0.7 -2.3 hypothetical protein compare
PS417_22810 -0.7 -1.3 DNA base-flipping protein YbaZ compare
PS417_27945 -0.7 -1.1 type VI secretion protein ImpA compare
PS417_06680 -0.7 -3.8 nuclease PIN compare
PS417_06355 -0.7 -2.1 protein-L-isoaspartate O-methyltransferase compare
PS417_10320 -0.7 -1.6 hypothetical protein compare
PS417_19065 -0.7 -0.6 monooxygenase compare
PS417_00370 -0.7 -0.8 hypothetical protein compare
PS417_16715 -0.7 -1.2 DoxX family protein compare
PS417_08945 -0.7 -3.8 heat shock protein 90 compare
PS417_05815 -0.7 -2.0 recombinase RecA compare
PS417_24430 -0.6 -0.9 3-dehydroquinate dehydratase compare
PS417_22565 -0.6 -0.8 formyltetrahydrofolate deformylase compare
PS417_28325 -0.6 -1.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_04075 -0.6 -2.9 peptide ABC transporter substrate-binding protein compare
PS417_24675 -0.6 -1.4 lipoyl synthase compare
PS417_09010 -0.6 -0.9 phosphohistidine phosphatase compare
PS417_24525 -0.6 -1.4 nuclease compare
PS417_09300 -0.6 -1.5 peptidylprolyl isomerase compare
PS417_12310 -0.6 -3.1 methionine synthase compare
PS417_10680 -0.6 -1.4 enoyl-CoA hydratase compare
PS417_04445 -0.6 -2.3 cupin compare
PS417_20310 -0.6 -1.0 hypothetical protein compare
PS417_22935 -0.6 -2.0 hypothetical protein compare
PS417_20875 -0.6 -2.3 chromosome segregation protein SMC compare
PS417_22575 -0.6 -2.8 exonuclease I compare
PS417_10695 -0.6 -2.2 decarboxylase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms