Experiment set7IT010 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x

200 most detrimental genes:

  gene name fitness t score description  
PS417_19825 +2.8 17.1 ATPase AAA compare
PS417_19885 +1.8 6.0 flagellar basal body rod protein FlgG compare
PS417_19830 +1.6 2.6 flagellar assembly protein FliT compare
PS417_19730 +1.6 4.6 flagellar biosynthesis protein FliR compare
PS417_19765 +1.6 8.7 flagellar hook-length control protein compare
PS417_19745 +1.6 5.9 flagellar assembly protein FliO compare
PS417_19785 +1.5 6.6 flagellar biogenesis protein compare
PS417_21565 +1.5 5.8 flagellar basal body rod protein FlgC compare
PS417_19880 +1.5 7.0 flagellar basal body L-ring protein compare
PS417_27815 +1.4 2.1 hypothetical protein compare
PS417_27875 +1.4 7.4 histidine kinase compare
PS417_19790 +1.4 4.0 ATP synthase compare
PS417_19710 +1.3 7.8 flagellar biosynthesis protein FlhA compare
PS417_21655 +1.3 1.6 aspartate kinase compare
PS417_21570 +1.3 5.9 flagellar basal body rod protein FlgB compare
PS417_19725 +1.3 5.7 flagellar biosynthesis protein FlhB compare
PS417_26805 +1.2 1.2 cell division protein FtsE compare
PS417_02980 +1.2 1.9 chemotaxis protein compare
PS417_19795 +1.1 5.8 flagellar assembly protein FliH compare
PS417_17645 +1.1 1.8 RND transporter compare
PS417_14065 +1.1 4.7 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_28450 +1.1 3.5 XRE family transcriptional regulator compare
PS417_24895 +1.1 1.1 hypothetical protein compare
PS417_07565 +1.0 3.7 hypothetical protein compare
PS417_15400 +1.0 1.5 hypothetical protein compare
PS417_21555 +1.0 6.4 flagellar hook protein FlgE compare
PS417_21585 +1.0 6.1 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19870 +1.0 2.1 flagellar rod assembly protein FlgJ compare
PS417_14540 +1.0 1.6 cytochrome C oxidase subunit III compare
PS417_02765 +1.0 1.9 phosphate starvation-inducible protein PsiF compare
PS417_07840 +1.0 2.5 hypothetical protein compare
PS417_04050 +1.0 2.3 peptide ABC transporter ATP-binding protein compare
PS417_01390 +1.0 6.2 PbsX family transcriptional regulator compare
PS417_19695 +1.0 3.8 flagellar biosynthesis sigma factor compare
PS417_19740 +1.0 3.6 flagellar biosynthesis protein flip compare
PS417_15495 +1.0 1.7 FAD-dependent oxidoreductase compare
PS417_01420 +1.0 7.4 histidine kinase compare
PS417_09245 +0.9 1.5 recombinase RdgC compare
PS417_07820 +0.9 2.0 transposase compare
PS417_13545 +0.9 2.1 arginine aminotransferase compare
PS417_01405 +0.9 3.0 sugar transporter compare
PS417_05400 +0.9 2.3 hypothetical protein compare
PS417_10405 +0.9 1.0 filamentous hemagglutinin compare
PS417_04915 +0.9 1.6 glutamine ABC transporter ATP-binding protein compare
PS417_01415 +0.9 5.5 glycosyl transferase family 1 compare
PS417_01395 +0.9 6.2 biofilm formation protein PelB compare
PS417_01400 +0.8 1.7 hypothetical protein compare
PS417_22630 +0.8 2.1 hypothetical protein compare
PS417_08025 +0.8 0.9 acetylornithine aminotransferase compare
PS417_08365 +0.8 0.9 hypothetical protein compare
PS417_26240 +0.8 1.8 N-methylproline demethylase compare
PS417_15480 +0.8 1.7 ABC transporter substrate-binding protein compare
PS417_06025 +0.8 2.2 alpha/beta hydrolase compare
PS417_17320 +0.8 2.7 phenylhydantoinase compare
PS417_12735 +0.8 1.7 peroxidase compare
PS417_17705 +0.8 1.8 LacI family transcriptional regulator compare
PS417_01630 +0.8 1.7 hypothetical protein compare
PS417_19735 +0.8 2.1 flagellar biosynthesis protein FliQ compare
PS417_01715 +0.8 1.4 hypothetical protein compare
PS417_07890 +0.8 1.5 hypothetical protein compare
PS417_26175 +0.8 0.6 sarcosine oxidase subunit gamma compare
PS417_12245 +0.8 1.7 GNAT family acetyltransferase compare
PS417_06780 +0.8 2.2 TetR family transcriptional regulator compare
PS417_28340 +0.8 1.8 hypothetical protein compare
PS417_22305 +0.8 3.2 histidine kinase compare
PS417_18640 +0.8 1.9 hydrolase compare
PS417_24535 +0.7 2.3 membrane protein compare
PS417_17855 +0.7 1.3 major facilitator transporter compare
PS417_13085 +0.7 2.0 FMN-dependent NADH-azoreductase compare
PS417_18055 +0.7 1.1 general secretion pathway protein GspK compare
PS417_01410 +0.7 5.0 transporter compare
PS417_11945 +0.7 1.5 hypothetical protein compare
PS417_15885 +0.7 1.4 GCN5 family acetyltransferase compare
PS417_01760 +0.7 3.5 imidazolonepropionase compare
PS417_01310 +0.7 2.7 ATPase compare
PS417_00630 +0.7 3.7 nitrate ABC transporter substrate-binding protein compare
PS417_07010 +0.7 1.4 pseudouridine synthase compare
PS417_06075 +0.7 1.5 hypothetical protein compare
PS417_19620 +0.7 1.7 hypothetical protein compare
PS417_22795 +0.7 1.8 exclusion suppressor FxsA compare
PS417_20105 +0.7 6.3 glycosyl transferase compare
PS417_01030 +0.7 1.2 glutamine ABC transporter substrate-binding protein compare
PS417_05560 +0.7 1.3 ABC transporter compare
PS417_13455 +0.7 1.2 alkaline proteinase inhibitor compare
PS417_21560 +0.7 2.5 flagellar basal body rod modification protein FlgD compare
PS417_28145 +0.7 1.6 AraC family transcriptional regulator compare
PS417_06635 +0.7 1.1 ferredoxin compare
PS417_16045 +0.7 1.7 acyl-CoA dehydrogenase compare
PS417_01635 +0.7 2.9 nitrogen regulation protein NR(I) compare
PS417_10720 +0.7 3.5 chemotaxis protein CheY compare
PS417_24030 +0.7 1.2 MFS transporter compare
PS417_18940 +0.7 1.6 LysR family transcriptional regulator compare
PS417_01795 +0.7 4.4 glucosyltransferase MdoH compare
PS417_10275 +0.7 1.5 histidine kinase compare
PS417_03455 +0.7 1.1 type III secretion protein compare
PS417_24275 +0.7 5.1 diguanylate phosphodiesterase compare
PS417_02745 +0.7 0.9 FMN-dependent NADH-azoreductase compare
PS417_20040 +0.6 2.8 cobyric acid synthase compare
PS417_03470 +0.6 3.0 ATP synthase compare
PS417_01790 +0.6 4.0 glucan biosynthesis protein G compare
PS417_10095 +0.6 0.8 hypothetical protein compare
PS417_24115 +0.6 1.1 hypothetical protein compare
PS417_09420 +0.6 1.5 LysR family transcriptional regulator compare
PS417_12730 +0.6 1.5 glycosyltransferase compare
PS417_15030 +0.6 0.9 short-chain dehydrogenase compare
PS417_15135 +0.6 0.9 hypothetical protein compare
PS417_11475 +0.6 1.7 membrane protein compare
PS417_24495 +0.6 2.3 NAD(FAD)-utilizing dehydrogenase compare
PS417_09160 +0.6 1.5 GNAT family acetyltransferase compare
PS417_10715 +0.6 1.7 Cro/Cl family transcriptional regulator compare
PS417_17755 +0.6 0.6 hypothetical protein compare
PS417_23455 +0.6 1.7 LrgA compare
PS417_17035 +0.6 0.9 Cro/Cl family transcriptional regulator compare
PS417_26115 +0.6 2.1 glutamine ABC transporter ATP-binding protein compare
PS417_03475 +0.6 1.5 type III secretion protein compare
PS417_11100 +0.6 2.3 MocE compare
PS417_22870 +0.6 1.9 lipoprotein compare
PS417_27165 +0.6 3.5 alkanesulfonate monooxygenase compare
PS417_00845 +0.6 0.8 transcriptional regulator compare
PS417_27135 +0.6 0.6 glutamine synthetase compare
PS417_17305 +0.6 0.9 hypothetical protein compare
PS417_02770 +0.6 1.9 membrane protein compare
PS417_11485 +0.6 0.9 AraC family transcriptional regulator compare
PS417_20095 +0.6 4.9 hypothetical protein compare
PS417_16815 +0.6 1.3 acyl-CoA dehydrogenase compare
PS417_13620 +0.6 1.1 thermostable hemolysin compare
PS417_21595 +0.6 1.4 flagellar biosynthesis protein FlgN compare
PS417_12925 +0.6 1.9 serine dehydratase compare
PS417_18250 +0.6 1.1 chemotaxis protein compare
PS417_20090 +0.6 3.9 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_02155 +0.6 1.8 chemotaxis protein compare
PS417_24620 +0.6 1.4 hypothetical protein compare
PS417_15955 +0.6 1.4 secretion protein HylD compare
PS417_15490 +0.6 2.1 glutamine ABC transporter ATP-binding protein compare
PS417_23710 +0.6 2.6 Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data) compare
PS417_06945 +0.6 0.5 membrane protein compare
PS417_15255 +0.6 2.0 serine/threonine protein kinase compare
PS417_02465 +0.6 2.6 carbohydrate kinase compare
PS417_16720 +0.6 0.8 membrane protein compare
PS417_07195 +0.6 1.7 hypothetical protein compare
PS417_18160 +0.6 0.9 YeeE/YedE compare
PS417_14240 +0.6 1.7 isochorismatase compare
PS417_19335 +0.6 1.0 isochorismatase compare
PS417_09335 +0.6 1.2 HAD family hydrolase compare
PS417_24400 +0.5 2.4 peptidase compare
PS417_04960 +0.5 1.2 hypothetical protein compare
PS417_26585 +0.5 1.2 malonate carrier protein compare
PS417_05710 +0.5 0.9 hypothetical protein compare
PS417_05545 +0.5 1.9 amino acid ABC transporter ATP-binding protein compare
PS417_01770 +0.5 1.7 glycine/betaine ABC transporter substrate-binding protein compare
PS417_07700 +0.5 1.3 chromosome partitioning protein ParA compare
PS417_18090 +0.5 2.5 iron ABC transporter compare
PS417_13250 +0.5 2.3 ABC transporter compare
PS417_13655 +0.5 1.9 xylulose kinase compare
PS417_04010 +0.5 3.2 glycine/betaine ABC transporter ATP-binding protein compare
PS417_15820 +0.5 1.3 universal stress protein UspA compare
PS417_20480 +0.5 1.3 hypothetical protein compare
PS417_17140 +0.5 1.3 LysR family transcriptional regulator compare
PS417_02435 +0.5 2.1 flagellar motor protein MotA compare
PS417_11410 +0.5 1.6 phospholipase compare
PS417_00510 +0.5 0.7 membrane protein compare
PS417_10335 +0.5 1.2 peroxiredoxin compare
PS417_16860 +0.5 1.2 diadenosine tetraphosphate hydrolase compare
PS417_24225 +0.5 1.3 hypothetical protein compare
PS417_16165 +0.5 2.6 ABC transporter substrate-binding protein compare
PS417_16180 +0.5 2.1 MFS transporter compare
PS417_24885 +0.5 1.8 transcriptional regulator compare
PS417_16035 +0.5 2.2 ABC transporter substrate-binding protein compare
PS417_01115 +0.5 0.6 serine acetyltransferase compare
PS417_19865 +0.5 3.3 flagellar hook protein FlgK compare
PS417_08360 +0.5 1.1 DoxX family protein compare
PS417_21425 +0.5 0.8 4-amino-4-deoxychorismate lyase compare
PS417_11510 +0.5 0.9 AraC family transcriptional regulator compare
PS417_05405 +0.5 2.9 L-alanine and D-alanine permease (from data) compare
PS417_18990 +0.5 1.2 membrane protein compare
PS417_01375 +0.5 1.5 hypothetical protein compare
PS417_10910 +0.5 1.1 FAD-dependent oxidoreductase compare
PS417_12400 +0.5 1.6 oxidoreductase compare
PS417_23615 +0.5 0.8 sulfate transporter compare
PS417_28015 +0.5 2.1 rubredoxin compare
PS417_17675 +0.5 0.8 ABC transporter compare
PS417_26655 +0.5 1.6 chemotaxis protein compare
PS417_28345 +0.5 3.2 cardiolipin synthetase compare
PS417_09680 +0.5 1.0 hydrolase compare
PS417_01750 +0.5 1.0 histidine ammonia-lyase compare
PS417_07420 +0.5 1.8 restriction endonuclease compare
PS417_09580 +0.5 1.6 tyrosyl-trna synthetase compare
PS417_18205 +0.5 0.8 aldehyde dehydrogenase compare
PS417_10655 +0.5 1.4 LuxR family transcriptional regulator compare
PS417_16060 +0.5 1.2 protein tolQ compare
PS417_05970 +0.5 2.3 chemotaxis protein CheR compare
PS417_14675 +0.5 1.9 aldehyde dehydrogenase compare
PS417_00625 +0.5 2.3 taurine dioxygenase compare
PS417_20340 +0.5 1.3 hypothetical protein compare
PS417_11925 +0.5 1.0 hypothetical protein compare
PS417_17340 +0.5 2.0 GNAT family acetyltransferase compare
PS417_00495 +0.5 2.0 ABC transporter permease compare
PS417_22705 +0.5 1.5 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_19630 +0.5 1.4 LuxR family transcriptional regulator compare
PS417_20825 +0.5 0.8 drug:proton antiporter compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms