Experiment set7IT009 for Agrobacterium fabrum C58

Compare to:

Lactitol carbon source

200 most important genes:

  gene name fitness t score description  
Atu2791 -7.3 -7.1 3-isopropylmalate dehydrogenase compare
Atu0038 -7.0 -6.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0099 -7.0 -10.7 prephenate dehydratase compare
Atu1205 -6.9 -10.6 threonine dehydratase compare
Atu2040 -6.9 -4.7 phosphoserine phosphatase compare
Atu1845 -6.8 -6.6 phosphoribosylformylglycinamidine synthase I compare
Atu3707 -6.4 -4.4 phosphoserine aminotransferase compare
Atu0432 -6.4 -9.7 O-succinylhomoserine sulfhydrylase compare
Atu2709 -6.3 -18.3 3-isopropylmalate dehydratase, large subunit compare
Atu0537 -6.2 -6.0 histidinol dehydrogenase compare
Atu2264 -6.2 -14.4 2-isopropylmalate synthase compare
Atu2036 -6.2 -14.4 acetolactate synthase III, large subunit compare
Atu2718 -6.1 -8.4 homoserine O-succinyltransferase compare
Atu1308 -5.9 -5.8 aspartate carbamoyl transferase catalytic subunit compare
Atu0678 -5.9 -5.8 histidyl-tRNA synthetase compare
Atu1588 -5.9 -11.4 homoserine dehydrogenase compare
Atu2650 -5.9 -12.7 glycerol-3-phosphate dehydrogenase compare
Atu3706 -5.8 -9.7 D-3-phosphoglycerate dehydrogenase compare
Atu1307 -5.8 -5.6 dihydroorotase compare
Atu1688 -5.8 -5.6 indole-3-glycerol-phosphate synthase compare
Atu2289 -5.8 -20.1 anthranilate synthase component I and II compare
Atu3754 -5.7 -8.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1750 -5.7 -4.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu3151 -5.7 -10.2 sugar ABC transporter substrate-binding protein conserved
Atu0486 -5.6 -5.4 dihydroorotate dehydrogenase compare
Atu2155 -5.6 -20.8 methionine synthase compare
Atu0298 -5.5 -3.8 orotidine 5 compare
Atu0679 -5.4 -7.5 ATP phosphoribosyltransferase compare
Atu0647 -5.4 -5.2 phosphoribosylamine--glycine ligase compare
Atu2790 -5.3 -3.0 3-isopropylmalate dehydratase, small subunit compare
Atu0043 -5.3 -3.7 imidazoleglycerol-phosphate dehydratase compare
Atu1075 -5.3 -8.1 amidophosphoribosyltransferase compare
Atu0400 -5.3 -3.7 orotate phosphoribosyltransferase compare
Atu1141 -5.3 -7.6 Phosphoribosylglycinamide synthetase compare
Atu3885 -5.1 -7.9 inositol monophosphatase compare
Atu3783 -5.1 -17.4 glutamate synthase subunit beta compare
Atu0041 -5.0 -3.4 glutamine amidotransferase compare
Atu1687 -4.9 -9.6 anthranilate phosphoribosyltransferase compare
Atu1030 -4.9 -3.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1446 -4.9 -3.3 two component response regulator compare
Atu2726 -4.8 -21.9 pyruvate carboxylase compare
Atu3150 -4.8 -10.0 sugar ABC transporter permease compare
Atu3348 -4.8 -9.0 hypothetical protein conserved
Atu3147 -4.8 -19.5 oxidoreductase compare
Atu2747 -4.7 -13.5 hypothetical protein compare
Atu0039 -4.5 -3.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu3784 -4.4 -27.5 glutamate synthase large subunit compare
Atu3347 -4.4 -13.5 hypothetical protein conserved
Atu1140 -4.4 -4.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3152 -4.3 -7.7 AraC family transcriptional regulator compare
Atu1850 -4.2 -5.0 phosphoribosylformylglycinamidine synthetase II compare
Atu0401 -4.0 -6.4 fructokinase compare
Atu3352 -4.0 -12.5 sugar ABC transporter substrate-binding protein compare
Atu0399 -3.9 -5.3 dihydroorotase compare
Atu0017 -3.8 -4.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3350 -3.8 -13.0 ABC transporter permease conserved
Atu1844 -3.7 -3.5 Phosphoribosylformylglycinamidine synthetase compare
Atu2015 -3.6 -13.3 aminotransferase compare
Atu3149 -3.6 -10.0 sugar ABC transporter permease compare
Atu1456 -3.6 -14.1 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3349 -3.5 -10.9 ABC transporter permease conserved
Atu3482 -3.5 -8.7 pantoate--beta-alanine ligase compare
Atu0641 -3.4 -5.0 hypothetical protein compare
Atu3351 -3.4 -12.9 sugar ABC transporter permease conserved
Atu0040 -3.3 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3739 -3.3 -4.7 phosphoglycerate kinase compare
Atu3148 -3.3 -8.7 sugar ABC transporter ATPase compare
Atu1589 -3.3 -8.6 aminotransferase, class I compare
Atu2274 -3.3 -8.5 cation efflux system protein compare
Atu1686 -3.2 -14.2 peptidyl-prolyl cis-trans isomerse D compare
Atu0047 -3.2 -14.4 malate synthase G compare
Atu2684 -3.2 -2.0 hypothetical protein compare
Atu1454 -3.1 -7.9 siroheme synthase compare
Atu0184 -3.1 -3.6 glucokinase compare
Atu0346 -3.1 -4.4 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1359 -3.0 -1.7 dnaK deletion suppressor protein compare
Atu3755 -3.0 -5.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3469 -2.9 -3.9 phosphoglyceromutase compare
Atu0029 -2.7 -6.6 S-adenosylhomocysteine hydrolase compare
Atu3483 -2.7 -5.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2548 -2.6 -13.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3598 -2.5 -3.4 thiol:disulfide interchange protein compare
Atu3731 -2.4 -9.2 5-formyltetrahydrofolate cyclo-ligase compare
Atu1455 -2.4 -4.2 hypothetical protein compare
Atu0030 -2.4 -2.5 phosphocarrier protein HPr compare
Atu2123 -2.3 -5.7 methylenetetrahydrofolate reductase compare
Atu4711 -2.2 -10.0 two component sensor kinase compare
Atu0598 -2.1 -7.1 phosphogluconate dehydratase compare
Atu1462 -1.8 -9.9 glycine cleavage system protein P2 compare
Atu1620 -1.8 -9.0 triosephosphate isomerase compare
Atu1463 -1.7 -8.2 glycine cleavage system component H compare
Atu2113 -1.7 -4.2 N-acetylmuramoyl-L-alanine amidase compare
Atu4773 -1.7 -1.9 two component response regulator compare
Atu1219 -1.7 -1.7 hypothetical protein compare
Atu1464 -1.7 -6.2 glycine cleavage system T protein, aminomethyltransferase compare
Atu0361 -1.6 -3.6 transcriptional regulator compare
Atu0536 -1.6 -8.0 hypothetical protein compare
Atu3730 -1.5 -1.9 hypothetical protein compare
Atu0803 -1.3 -9.2 pyruvate,orthophosphate dikinase compare
Atu1445 -1.3 -3.9 two component sensor kinase compare
Atu4318 -1.3 -5.7 xylitol dehydrogenase compare
Atu5034 -1.2 -2.0 hypothetical protein compare
Atu2249 -1.2 -1.4 hypothetical protein compare
Atu2209 -1.2 -2.4 pyrroline-5-carboxylate reductase compare
Atu0119 -1.2 -1.4 hypothetical protein compare
Atu1163 -1.1 -2.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2728 -1.1 -3.9 beta (1-->2) glucan export ATP-binding protein compare
Atu2125 -1.1 -1.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu8115 -1.1 -4.1 Hypothetical Protein compare
Atu0434 -1.1 -2.6 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2205 -1.1 -5.1 transcriptional regulator, MarR family compare
Atu0031 -1.0 -1.1 PTS system, IIA component compare
Atu0188 -1.0 -3.6 ABC transporter, membrane spanning protein (peptide) compare
Atu1327 -1.0 -1.6 NADH-ubiquinone oxidoreductase compare
Atu1457 -1.0 -1.2 hypothetical protein compare
Atu0062 -1.0 -4.6 transcriptional regulator, ROK family compare
Atu0876 -1.0 -1.8 superoxide dismutase compare
Atu5125 -1.0 -3.9 GntR family transcriptional regulator compare
Atu3963 -1.0 -6.1 GntR family transcriptional regulator compare
Atu2237 -1.0 -3.6 cytochrome c1 compare
Atu0966 -0.9 -2.5 hypothetical protein compare
Atu0535 -0.9 -3.2 hypothetical protein compare
Atu4166 -0.9 -2.0 UDP-glucose 4-epimerase compare
Atu0190 -0.9 -5.1 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1685 -0.9 -1.0 hypothetical protein compare
Atu2192 -0.9 -1.5 hypothetical protein compare
Atu1223 -0.9 -1.5 hypothetical protein compare
Atu4514 -0.9 -2.9 RpiR family transcriptional regulator compare
Atu1546 -0.8 -2.9 transcriptional regulator, MerR family compare
Atu0677 -0.8 -1.9 hypothetical protein compare
Atu0026 -0.8 -0.9 hypothetical protein compare
Atu1503 -0.8 -1.0 hypothetical protein compare
Atu2746 -0.8 -2.1 hypothetical protein compare
Atu0786 -0.8 -3.6 peptidase, family M16 compare
Atu0421 -0.8 -1.0 ABC transporter, membrane spanning protein compare
Atu5430 -0.8 -0.7 hypothetical protein compare
Atu1902 -0.7 -3.2 transketolase compare
Atu0477 -0.7 -1.5 hypothetical protein compare
Atu3468 -0.7 -0.7 hypothetical protein compare
Atu2376 -0.7 -0.6 hypothetical protein compare
Atu0718 -0.7 -1.5 hypothetical protein compare
Atu3750 -0.7 -1.6 thiamine-phosphate pyrophosphorylase compare
Atu0565 -0.7 -3.0 hypothetical protein compare
Atu1028 -0.7 -1.5 hypothetical protein compare
Atu8191 -0.7 -1.6 hypothetical protein compare
Atu2745 -0.7 -5.0 acetyl-coenzyme A synthetase compare
Atu2406 -0.7 -1.6 hypothetical protein compare
Atu2464 -0.7 -1.7 formyltetrahydrofolate deformylase compare
Atu5115 -0.7 -1.1 hypothetical protein compare
Atu0332 -0.7 -4.0 RNA polymerase sigma-54 factor compare
Atu3775 -0.7 -2.4 hypothetical protein compare
Atu4505 -0.7 -4.1 LacI family transcriptional regulator compare
Atu1439 -0.7 -2.0 hypothetical protein compare
Atu4364 -0.6 -4.7 LacI family transcriptional regulator compare
Atu2489 -0.6 -3.5 hypothetical protein compare
Atu3732 -0.6 -3.4 hemolysin compare
Atu1175 -0.6 -1.2 hypothetical protein compare
Atu0141 -0.6 -1.2 cytochrome O ubiquinol oxidase subunit I compare
Atu0422 -0.6 -1.2 ABC transporter, membrane spanning protein compare
Atu0189 -0.6 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu0703 -0.6 -1.2 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu4373 -0.6 -3.5 LacI family transcriptional regulator compare
Atu8144 -0.6 -1.4 hypothetical protein compare
Atu4502 -0.6 -2.9 cobalamin synthesis protein compare
Atu5157 -0.6 -1.4 hypothetical protein compare
Atu3496 -0.6 -2.3 hypothetical protein compare
Atu8036 -0.6 -2.6 protein YBGT-like protein compare
Atu4077 -0.6 -3.9 glycogen branching protein compare
Atu0812 -0.6 -1.5 hypothetical protein compare
Atu3740 -0.6 -3.2 fructose bisphosphate aldolase compare
Atu0185 -0.6 -2.0 methylglyoxal synthase compare
Atu0926 -0.6 -3.5 hypothetical protein compare
Atu1868 -0.6 -3.1 tRNA/rRNA methyltransferase compare
Atu1023 -0.6 -1.3 hypothetical protein compare
Atu3759 -0.6 -1.1 hypothetical protein compare
Atu8056 -0.6 -0.7 hypothetical protein compare
Atu1731 -0.6 -2.4 xanthine-guanine phosphoribosyltransferase compare
Atu6133 -0.6 -2.3 conserved hypothetical protein compare
Atu4223 -0.6 -1.2 sarcosine oxidase delta subunit compare
Atu1705 -0.6 -1.7 SEC-independent protein translocase protein compare
Atu4317 -0.6 -1.3 TetR family transcriptional regulator compare
Atu3572 -0.5 -3.0 transcriptional regulator compare
Atu2606 -0.5 -2.3 transcriptional regulator, GntR family compare
Atu1085 -0.5 -1.9 transcriptional regulator, MarR family compare
Atu3164 -0.5 -2.5 sorbitol dehydrogenase compare
Atu3486 -0.5 -1.9 DeoR family transcriptional regulator compare
Atu0205 -0.5 -3.8 methylmalonate-semialdehyde dehydrogenase compare
Atu4148 -0.5 -2.6 UDP-glucuronic acid epimerase compare
Atu2020 -0.5 -3.1 transcriptional regulator, TetR family compare
Atu2801 -0.5 -1.8 precorrin-2 C20 methyltransferase compare
Atu3337 -0.5 -3.6 LacI family transcriptional regulator compare
Atu1241 -0.5 -0.9 hypothetical protein compare
Atu2555 -0.5 -2.2 L-lysine 2,3-aminomutase compare
Atu2270 -0.5 -0.8 ATP-dependent Clp protease, proteolytic subunit compare
Atu1774 -0.5 -2.7 ABC transporter, substrate binding protein (peptide) compare
Atu6138 -0.5 -2.2 Repressor of the acc and arc operons compare
Atu0931 -0.5 -3.4 penicillin binding protein compare
Atu3485 -0.5 -3.5 short chain dehydrogenase compare
Atu1417 -0.5 -2.5 enoyl-CoA hydratase compare
Atu3674 -0.5 -1.6 hypothetical protein compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source Lactitol in Agrobacterium fabrum C58

For carbon source Lactitol across organisms