Experiment set7IT008 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x

200 most important genes:

  gene name fitness t score description  
PS417_24155 -5.3 -5.9 ATP-binding protein compare
PS417_20985 -5.1 -6.1 porin compare
PS417_24745 -4.7 -6.4 gamma-glutamyl phosphate reductase compare
PS417_27040 -4.5 -2.4 3-phosphoglycerate dehydrogenase compare
PS417_27795 -4.1 -1.5 orotate phosphoribosyltransferase compare
PS417_02005 -3.8 -14.7 glutamate synthase compare
PS417_05595 -3.7 -10.3 ornithine carbamoyltransferase compare
PS417_06375 -3.7 -1.4 deoxycytidine triphosphate deaminase compare
PS417_01855 -3.4 -3.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_23545 -3.3 -3.7 gamma-glutamyl kinase compare
PS417_28220 -3.2 -3.6 LysR family transcriptional regulator compare
PS417_02000 -3.2 -14.3 glutamate synthase compare
PS417_22690 -3.1 -6.5 phosphogluconate dehydratase compare
PS417_23995 -3.1 -1.6 preprotein translocase subunit SecG compare
PS417_02510 -3.0 -8.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_02415 -3.0 -5.8 phosphoserine phosphatase compare
PS417_22450 -3.0 -3.1 ATP-dependent DNA helicase RuvA compare
PS417_01575 -2.7 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_20125 -2.7 -5.3 phosphoribosylglycinamide formyltransferase compare
PS417_26730 -2.7 -1.4 pyrroline-5-carboxylate reductase compare
PS417_27195 -2.6 -2.0 N-acetylglutamate synthase compare
PS417_01560 -2.6 -4.1 imidazoleglycerol-phosphate dehydratase compare
PS417_01605 -2.5 -3.0 phosphoglycerate mutase compare
PS417_28070 -2.4 -8.5 phosphate ABC transporter ATP-binding protein compare
PS417_01580 -2.3 -2.1 imidazole glycerol phosphate synthase compare
PS417_04415 -2.2 -7.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23810 -2.2 -12.4 acetolactate synthase 3 catalytic subunit compare
PS417_23950 -2.2 -5.0 polynucleotide phosphorylase/polyadenylase compare
PS417_01850 -2.2 -7.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_27835 -2.2 -7.8 endoribonuclease compare
PS417_01565 -2.2 -6.6 imidazole glycerol phosphate synthase compare
PS417_20160 -2.1 -3.2 cysteine synthase compare
PS417_07170 -2.1 -3.3 hypothetical protein compare
PS417_04420 -2.1 -8.6 histidinol dehydrogenase compare
PS417_23805 -2.1 -7.0 acetolactate synthase 3 regulatory subunit compare
PS417_27870 -2.0 -5.9 ATP-dependent DNA helicase RecG compare
PS417_23800 -2.0 -9.1 ketol-acid reductoisomerase compare
PS417_00185 -1.9 -4.9 tryptophan synthase subunit beta compare
PS417_27435 -1.9 -7.2 polyphosphate kinase compare
PS417_08125 -1.9 -1.9 prephenate dehydratase compare
PS417_26890 -1.8 -5.9 dihydroxy-acid dehydratase compare
PS417_23770 -1.8 -3.3 exodeoxyribonuclease V subunit alpha compare
PS417_00180 -1.8 -2.4 tryptophan synthase subunit alpha compare
PS417_01570 -1.7 -1.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_05975 -1.7 -1.0 chemotaxis protein CheW compare
PS417_26995 -1.7 -9.2 phosphoserine phosphatase compare
PS417_06530 -1.7 -3.7 membrane protein compare
PS417_27585 -1.6 -3.1 diaminopimelate epimerase compare
PS417_04375 -1.6 -3.2 ABC transporter ATP-binding protein compare
PS417_21000 -1.5 -2.7 CrfX protein compare
PS417_03560 -1.5 -1.9 GTP-binding protein compare
PS417_12855 -1.5 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18560 -1.5 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25715 -1.5 -5.8 anthranilate phosphoribosyltransferase compare
PS417_18530 -1.5 -4.8 O-succinylhomoserine sulfhydrylase compare
PS417_16555 -1.4 -1.9 cupin compare
PS417_07165 -1.4 -3.4 dihydrodipicolinate synthase compare
PS417_28080 -1.4 -7.9 phosphate ABC transporter permease compare
PS417_06680 -1.4 -7.2 nuclease PIN compare
PS417_27800 -1.4 -4.4 exodeoxyribonuclease III compare
PS417_20635 -1.3 -1.3 ABC transporter ATP-binding protein compare
PS417_04410 -1.3 -1.8 hypothetical protein compare
PS417_10015 -1.3 -1.5 hypothetical protein compare
PS417_11175 -1.3 -3.4 AraC family transcriptional regulator compare
PS417_18040 -1.3 -2.0 general secretion pathway protein GspN compare
PS417_26745 -1.3 -4.4 methionine biosynthesis protein MetW compare
PS417_23775 -1.3 -1.4 exodeoxyribonuclease V subunit beta compare
PS417_18055 -1.3 -1.2 general secretion pathway protein GspK compare
PS417_26740 -1.3 -6.1 homoserine acetyltransferase compare
PS417_10220 -1.3 -5.0 hypothetical protein compare
PS417_18585 -1.2 -3.7 3-isopropylmalate dehydrogenase compare
PS417_23315 -1.2 -1.4 transcriptional regulator compare
PS417_15930 -1.2 -4.2 thioredoxin reductase compare
PS417_23580 -1.2 -1.8 peptidylprolyl isomerase compare
PS417_12870 -1.2 -1.8 enoyl-CoA hydratase compare
PS417_08155 -1.2 -2.0 integration host factor subunit beta compare
PS417_01145 -1.2 -1.1 taurine transporter ATP-binding subunit compare
PS417_02555 -1.2 -8.3 exoribonuclease R compare
PS417_25725 -1.1 -7.1 anthranilate synthase component I compare
PS417_17070 -1.1 -1.4 RNA polymerase subunit sigma-24 compare
PS417_06685 -1.1 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_10985 -1.1 -1.1 NADH:flavin oxidoreductase compare
PS417_23110 -1.1 -4.8 2-isopropylmalate synthase compare
PS417_18600 -1.1 -2.4 isopropylmalate isomerase compare
PS417_08135 -1.1 -5.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_06355 -1.1 -3.3 protein-L-isoaspartate O-methyltransferase compare
PS417_06770 -1.1 -4.5 multidrug transporter compare
PS417_06775 -1.1 -3.2 antibiotic transporter compare
PS417_07710 -1.1 -6.1 membrane protein compare
PS417_08580 -1.1 -4.6 histidine kinase compare
PS417_01030 -1.0 -1.5 glutamine ABC transporter substrate-binding protein compare
PS417_18425 -1.0 -1.9 sporulation protein compare
PS417_05695 -1.0 -4.0 transcriptional regulator compare
PS417_22620 -1.0 -2.6 pyruvate kinase compare
PS417_16560 -1.0 -2.0 GNAT family acetyltransferase compare
PS417_23380 -1.0 -2.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_19275 -1.0 -0.9 hypothetical protein compare
PS417_04390 -1.0 -4.0 toluene tolerance protein compare
PS417_17565 -1.0 -2.4 branched-chain amino acid aminotransferase compare
PS417_19645 -1.0 -1.5 chemotaxis protein compare
PS417_00195 -1.0 -2.1 hypothetical protein compare
PS417_03815 -1.0 -2.2 DNA transporter compare
PS417_08225 -1.0 -3.5 acetolactate synthase compare
PS417_17610 -1.0 -1.9 AsnC family transcriptional regulator compare
PS417_22050 -1.0 -4.5 ribonuclease BN compare
PS417_18690 -1.0 -3.6 aromatic amino acid aminotransferase compare
PS417_00030 -0.9 -2.4 hypothetical protein compare
PS417_02225 -0.9 -2.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_17215 -0.9 -2.7 peptidylprolyl isomerase compare
PS417_22445 -0.9 -2.7 ATP-dependent DNA helicase RuvB compare
PS417_25710 -0.9 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_08205 -0.9 -2.4 acetyltransferase compare
PS417_12555 -0.9 -4.4 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_20340 -0.9 -1.5 hypothetical protein compare
PS417_19955 -0.9 -1.4 hypothetical protein compare
PS417_11615 -0.9 -1.4 urea ABC transporter ATP-binding protein compare
PS417_00085 -0.9 -1.8 16S rRNA methyltransferase compare
PS417_17240 -0.9 -1.9 trigger factor compare
PS417_27940 -0.9 -1.2 type VI secretion protein compare
PS417_21630 -0.9 -1.9 magnesium transporter compare
PS417_05065 -0.9 -1.6 hypothetical protein compare
PS417_13735 -0.9 -1.2 hypothetical protein compare
PS417_18370 -0.9 -2.0 hypothetical protein compare
PS417_27715 -0.9 -1.4 Fe-S oxidoreductase compare
PS417_04305 -0.9 -1.5 aspartate ammonia-lyase compare
PS417_08190 -0.9 -6.2 membrane protein compare
PS417_05010 -0.9 -1.1 IclR family transcriptional regulator compare
PS417_01965 -0.9 -2.0 fimbriae biosynthesis protein compare
PS417_06895 -0.9 -3.2 DNA-binding protein compare
PS417_18595 -0.8 -2.8 3-isopropylmalate dehydratase compare
PS417_06200 -0.8 -2.9 protein-PII uridylyltransferase compare
PS417_05445 -0.8 -1.3 DNA mismatch repair protein MutT compare
PS417_21065 -0.8 -2.0 3-methylitaconate isomerase compare
PS417_22575 -0.8 -4.7 exonuclease I compare
PS417_22520 -0.8 -2.1 histidine kinase compare
PS417_00900 -0.8 -1.5 4-aminobutyrate aminotransferase compare
PS417_09210 -0.8 -1.2 TetR family transcriptional regulator compare
PS417_09545 -0.8 -2.0 aldehyde-activating protein compare
PS417_13425 -0.8 -1.5 cupin compare
PS417_20310 -0.8 -2.0 hypothetical protein compare
PS417_14280 -0.8 -2.4 hypothetical protein compare
PS417_08185 -0.8 -3.6 glycosyl transferase compare
PS417_08540 -0.8 -2.2 RNA helicase compare
PS417_06175 -0.8 -3.1 cysteine sulfinate desulfinase compare
PS417_22990 -0.8 -1.2 iron dicitrate transport regulator FecR compare
PS417_19675 -0.8 -1.9 chemotaxis protein CheY compare
PS417_27865 -0.8 -1.9 LysR family transcriptional regulator compare
PS417_17490 -0.8 -1.4 ABC transporter ATP-binding protein compare
PS417_17980 -0.8 -2.0 ABC transporter permease compare
PS417_08200 -0.8 -1.9 hypothetical protein compare
PS417_22945 -0.7 -1.6 phosphoribosylglycinamide formyltransferase compare
PS417_15780 -0.7 -2.0 membrane protein compare
PS417_19195 -0.7 -2.3 hypothetical protein compare
PS417_06165 -0.7 -2.6 thiamine biosynthesis protein ThiF compare
PS417_00705 -0.7 -1.2 MarR family transcriptional regulator compare
PS417_17945 -0.7 -0.7 hypothetical protein compare
PS417_04385 -0.7 -2.6 organic solvent ABC transporter substrate-binding protein compare
PS417_18590 -0.7 -1.7 SAM-dependent methyltransferase compare
PS417_11400 -0.7 -1.1 phosphoglycerate mutase compare
PS417_19095 -0.7 -0.9 hypothetical protein compare
PS417_14925 -0.7 -2.4 2-methylcitrate dehydratase compare
PS417_21510 -0.7 -1.3 histidine kinase compare
PS417_25720 -0.7 -2.5 anthranilate synthase component II compare
PS417_04585 -0.7 -1.4 hypothetical protein compare
PS417_08245 -0.7 -1.0 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_13195 -0.7 -2.6 RND transporter MFP subunit compare
PS417_05120 -0.7 -2.2 RNA polymerase subunit sigma-24 compare
PS417_10675 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_13375 -0.7 -3.9 LysR family transcriptional regulator compare
PS417_00375 -0.7 -1.8 membrane protein compare
PS417_19650 -0.7 -2.2 chemotaxis protein CheW compare
PS417_19805 -0.7 -2.2 flagellar M-ring protein FliF compare
PS417_13305 -0.7 -0.5 hypothetical protein compare
PS417_06540 -0.7 -0.7 membrane protein compare
PS417_07470 -0.7 -1.2 hypothetical protein compare
PS417_23505 -0.7 -2.1 cell division protein DedD compare
PS417_02560 -0.7 -1.0 23S rRNA methyltransferase compare
PS417_23250 -0.7 -2.7 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_00535 -0.7 -1.0 Holliday junction resolvase compare
PS417_05235 -0.7 -1.1 peptidase inhibitor I42 compare
PS417_06280 -0.7 -2.8 ribonuclease HII compare
PS417_02210 -0.7 -2.0 diguanylate cyclase compare
PS417_17615 -0.7 -2.5 leucyl-tRNA synthetase compare
PS417_08410 -0.7 -2.1 hypothetical protein compare
PS417_05905 -0.7 -1.4 hypothetical protein compare
PS417_01270 -0.7 -1.4 iron ABC transporter substrate-binding protein compare
PS417_14400 -0.6 -1.7 hypothetical protein compare
PS417_24785 -0.6 -1.8 nucleoside-diphosphate sugar epimerase compare
PS417_16715 -0.6 -1.0 DoxX family protein compare
PS417_02815 -0.6 -3.7 urea ABC transporter ATP-binding protein compare
PS417_21845 -0.6 -1.3 membrane protein compare
PS417_19335 -0.6 -1.2 isochorismatase compare
PS417_02270 -0.6 -2.4 carbamoyltransferase compare
PS417_08130 -0.6 -1.1 aspartate aminotransferase compare
PS417_02950 -0.6 -1.3 tRNA-dihydrouridine synthase B compare
PS417_11885 -0.6 -1.6 Inositol transport system sugar-binding protein (from data) compare
PS417_24385 -0.6 -2.7 tRNA (uracil-5-)-methyltransferase compare
PS417_06635 -0.6 -0.9 ferredoxin compare
PS417_03260 -0.6 -1.4 5S ribosomal RNA compare
PS417_16950 -0.6 -1.9 fimbrial protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms