Experiment set7IT007 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x

200 most important genes:

  gene name fitness t score description  
PS417_24155 -5.3 -6.8 ATP-binding protein compare
PS417_24745 -4.6 -7.0 gamma-glutamyl phosphate reductase compare
PS417_27795 -4.1 -1.4 orotate phosphoribosyltransferase compare
PS417_05975 -3.7 -1.2 chemotaxis protein CheW compare
PS417_20985 -3.6 -5.3 porin compare
PS417_27195 -3.3 -2.2 N-acetylglutamate synthase compare
PS417_27040 -3.3 -2.4 3-phosphoglycerate dehydrogenase compare
PS417_02415 -3.2 -7.2 phosphoserine phosphatase compare
PS417_23995 -3.2 -1.5 preprotein translocase subunit SecG compare
PS417_05595 -3.2 -8.8 ornithine carbamoyltransferase compare
PS417_23545 -2.9 -4.3 gamma-glutamyl kinase compare
PS417_02005 -2.9 -13.1 glutamate synthase compare
PS417_08125 -2.8 -2.0 prephenate dehydratase compare
PS417_02000 -2.7 -15.3 glutamate synthase compare
PS417_26730 -2.7 -1.2 pyrroline-5-carboxylate reductase compare
PS417_01565 -2.6 -7.6 imidazole glycerol phosphate synthase compare
PS417_08245 -2.5 -2.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_01575 -2.3 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01855 -2.3 -3.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_07170 -2.2 -4.3 hypothetical protein compare
PS417_01605 -2.2 -1.9 phosphoglycerate mutase compare
PS417_16715 -2.2 -2.8 DoxX family protein compare
PS417_20160 -2.1 -4.4 cysteine synthase compare
PS417_04415 -2.1 -7.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_02510 -2.1 -3.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23810 -2.0 -11.9 acetolactate synthase 3 catalytic subunit compare
PS417_06375 -1.9 -1.1 deoxycytidine triphosphate deaminase compare
PS417_23805 -1.9 -5.0 acetolactate synthase 3 regulatory subunit compare
PS417_04420 -1.9 -10.6 histidinol dehydrogenase compare
PS417_00180 -1.8 -3.1 tryptophan synthase subunit alpha compare
PS417_01850 -1.8 -6.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_27435 -1.8 -6.6 polyphosphate kinase compare
PS417_20125 -1.8 -5.5 phosphoribosylglycinamide formyltransferase compare
PS417_27005 -1.7 -1.3 membrane protein compare
PS417_04410 -1.7 -1.7 hypothetical protein compare
PS417_27870 -1.7 -4.6 ATP-dependent DNA helicase RecG compare
PS417_27835 -1.7 -5.1 endoribonuclease compare
PS417_22690 -1.6 -4.7 phosphogluconate dehydratase compare
PS417_28220 -1.6 -1.8 LysR family transcriptional regulator compare
PS417_28070 -1.6 -7.4 phosphate ABC transporter ATP-binding protein compare
PS417_00755 -1.6 -1.0 biofilm PGA synthesis protein PgaD compare
PS417_01560 -1.6 -2.3 imidazoleglycerol-phosphate dehydratase compare
PS417_18595 -1.6 -3.2 3-isopropylmalate dehydratase compare
PS417_10390 -1.5 -3.3 RNA polymerase subunit sigma24 compare
PS417_17240 -1.5 -4.6 trigger factor compare
PS417_18560 -1.4 -7.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_08185 -1.4 -4.4 glycosyl transferase compare
PS417_21625 -1.4 -1.5 DNA-binding protein compare
PS417_04375 -1.4 -2.6 ABC transporter ATP-binding protein compare
PS417_23800 -1.4 -7.1 ketol-acid reductoisomerase compare
PS417_13800 -1.4 -3.0 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_15325 -1.3 -1.5 type VI secretion protein compare
PS417_23770 -1.3 -2.1 exodeoxyribonuclease V subunit alpha compare
PS417_22570 -1.3 -1.1 H-NS histone compare
PS417_01570 -1.3 -2.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_12855 -1.3 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26740 -1.3 -5.8 homoserine acetyltransferase compare
PS417_20855 -1.3 -1.7 hypothetical protein compare
PS417_18600 -1.2 -1.8 isopropylmalate isomerase compare
PS417_27800 -1.2 -4.3 exodeoxyribonuclease III compare
PS417_09235 -1.2 -1.4 molecular chaperone compare
PS417_06775 -1.2 -4.3 antibiotic transporter compare
PS417_03260 -1.2 -1.5 5S ribosomal RNA compare
PS417_15915 -1.2 -1.7 hypothetical protein compare
PS417_18585 -1.2 -4.2 3-isopropylmalate dehydrogenase compare
PS417_00185 -1.2 -3.0 tryptophan synthase subunit beta compare
PS417_23950 -1.2 -2.2 polynucleotide phosphorylase/polyadenylase compare
PS417_19645 -1.2 -3.3 chemotaxis protein compare
PS417_08220 -1.2 -1.2 epimerase compare
PS417_23490 -1.2 -1.4 dihydrofolate reductase compare
PS417_08155 -1.2 -2.2 integration host factor subunit beta compare
PS417_26890 -1.2 -4.4 dihydroxy-acid dehydratase compare
PS417_03815 -1.2 -3.1 DNA transporter compare
PS417_26995 -1.2 -5.5 phosphoserine phosphatase compare
PS417_06200 -1.2 -4.5 protein-PII uridylyltransferase compare
PS417_25710 -1.2 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_27705 -1.2 -1.7 amino acid dehydrogenase compare
PS417_00455 -1.1 -1.6 hypothetical protein compare
PS417_23910 -1.1 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_02555 -1.1 -8.6 exoribonuclease R compare
PS417_08410 -1.1 -2.6 hypothetical protein compare
PS417_26745 -1.1 -4.0 methionine biosynthesis protein MetW compare
PS417_01580 -1.1 -1.4 imidazole glycerol phosphate synthase compare
PS417_04585 -1.1 -1.5 hypothetical protein compare
PS417_06770 -1.1 -3.8 multidrug transporter compare
PS417_11535 -1.1 -2.1 nicotinate phosphoribosyltransferase compare
PS417_22580 -1.1 -2.5 membrane protein compare
PS417_16555 -1.1 -2.3 cupin compare
PS417_26990 -1.1 -1.2 RNA pyrophosphohydrolase compare
PS417_13305 -1.1 -1.4 hypothetical protein compare
PS417_08230 -1.1 -2.0 lipopolysaccharide biosynthesis protein RfbH compare
PS417_08250 -1.1 -2.4 competence protein ComEA compare
PS417_17780 -1.1 -1.1 Ais protein compare
PS417_13140 -1.1 -1.6 oxidoreductase compare
PS417_07710 -1.0 -6.0 membrane protein compare
PS417_03560 -1.0 -1.4 GTP-binding protein compare
PS417_18530 -1.0 -3.8 O-succinylhomoserine sulfhydrylase compare
PS417_18690 -1.0 -3.1 aromatic amino acid aminotransferase compare
PS417_08540 -1.0 -2.7 RNA helicase compare
PS417_04390 -1.0 -4.8 toluene tolerance protein compare
PS417_18070 -1.0 -1.1 general secretion pathway protein GspH compare
PS417_11175 -1.0 -1.9 AraC family transcriptional regulator compare
PS417_20030 -1.0 -3.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_10025 -1.0 -1.4 bacteriophage lambda NinG family protein compare
PS417_08580 -1.0 -4.6 histidine kinase compare
PS417_04385 -1.0 -3.0 organic solvent ABC transporter substrate-binding protein compare
PS417_21360 -1.0 -1.0 termination factor Rho compare
PS417_06165 -1.0 -2.6 thiamine biosynthesis protein ThiF compare
PS417_05695 -0.9 -3.8 transcriptional regulator compare
PS417_22445 -0.9 -2.2 ATP-dependent DNA helicase RuvB compare
PS417_07010 -0.9 -1.9 pseudouridine synthase compare
PS417_20635 -0.9 -1.0 ABC transporter ATP-binding protein compare
PS417_23110 -0.9 -5.0 2-isopropylmalate synthase compare
PS417_04380 -0.9 -1.4 ABC transporter permease compare
PS417_22085 -0.9 -1.6 aldehyde dehydrogenase compare
PS417_05790 -0.9 -3.7 hypothetical protein compare
PS417_10675 -0.9 -1.0 TetR family transcriptional regulator compare
PS417_21630 -0.9 -2.3 magnesium transporter compare
PS417_13425 -0.9 -1.0 cupin compare
PS417_08190 -0.9 -6.7 membrane protein compare
PS417_12375 -0.9 -1.8 serine/threonine protein phosphatase compare
PS417_06680 -0.9 -5.5 nuclease PIN compare
PS417_12840 -0.9 -2.1 TetR family transcriptional regulator compare
PS417_09085 -0.9 -1.1 hypothetical protein compare
PS417_00195 -0.9 -2.3 hypothetical protein compare
PS417_28080 -0.9 -5.6 phosphate ABC transporter permease compare
PS417_26230 -0.9 -2.2 electron transfer flavoprotein subunit alpha compare
PS417_11320 -0.9 -1.7 hypothetical protein compare
PS417_06745 -0.9 -1.5 polysaccharide deacetylase compare
PS417_22950 -0.9 -1.5 preQ0 transporter compare
PS417_14235 -0.9 -2.4 hypothetical protein compare
PS417_27585 -0.9 -2.5 diaminopimelate epimerase compare
PS417_00370 -0.8 -1.0 hypothetical protein compare
PS417_13010 -0.8 -1.9 alpha/beta hydrolase compare
PS417_06530 -0.8 -1.3 membrane protein compare
PS417_11770 -0.8 -1.2 pyruvate dehydrogenase compare
PS417_06645 -0.8 -4.4 RNA polymerase-associated protein RapA compare
PS417_23315 -0.8 -1.1 transcriptional regulator compare
PS417_26985 -0.8 -3.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_23580 -0.8 -1.4 peptidylprolyl isomerase compare
PS417_04530 -0.8 -1.5 glycerate dehydrogenase compare
PS417_19285 -0.8 -1.1 ankyrin compare
PS417_01630 -0.8 -1.4 hypothetical protein compare
PS417_08135 -0.8 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_12695 -0.8 -3.7 mannitol dehydrogenase compare
PS417_19675 -0.8 -2.6 chemotaxis protein CheY compare
PS417_02070 -0.8 -0.9 membrane protein compare
PS417_25715 -0.8 -2.0 anthranilate phosphoribosyltransferase compare
PS417_08195 -0.8 -4.3 hypothetical protein compare
PS417_25780 -0.8 -2.5 molecular chaperone DnaJ compare
PS417_13790 -0.8 -3.0 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_06540 -0.8 -1.3 membrane protein compare
PS417_25725 -0.8 -5.0 anthranilate synthase component I compare
PS417_21705 -0.8 -3.3 arginine N-succinyltransferase compare
PS417_01915 -0.8 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_20715 -0.8 -2.0 cytochrome Cbb3 compare
PS417_17070 -0.8 -1.5 RNA polymerase subunit sigma-24 compare
PS417_17830 -0.8 -2.4 4-hydroxyphenylacetate isomerase compare
PS417_15085 -0.8 -2.7 ATPase AAA compare
PS417_15930 -0.8 -2.8 thioredoxin reductase compare
PS417_22840 -0.8 -1.4 tRNA-Met compare
PS417_17215 -0.7 -1.8 peptidylprolyl isomerase compare
PS417_04220 -0.7 -0.9 4-carboxymuconolactone decarboxylase compare
PS417_04305 -0.7 -1.0 aspartate ammonia-lyase compare
PS417_05815 -0.7 -2.4 recombinase RecA compare
PS417_00900 -0.7 -1.3 4-aminobutyrate aminotransferase compare
PS417_22990 -0.7 -0.9 iron dicitrate transport regulator FecR compare
PS417_12455 -0.7 -2.0 hydrolase compare
PS417_10220 -0.7 -1.9 hypothetical protein compare
PS417_05785 -0.7 -1.8 tail protein compare
PS417_09865 -0.7 -1.2 hypothetical protein compare
PS417_10920 -0.7 -1.0 LysR family transcriptional regulator compare
PS417_10710 -0.7 -1.4 GNAT family acetyltransferase compare
PS417_12015 -0.7 -2.2 phosphoglycerate mutase compare
PS417_27865 -0.7 -1.5 LysR family transcriptional regulator compare
PS417_02210 -0.7 -2.9 diguanylate cyclase compare
PS417_02815 -0.7 -1.9 urea ABC transporter ATP-binding protein compare
PS417_28050 -0.7 -2.2 hypothetical protein compare
PS417_06895 -0.7 -2.0 DNA-binding protein compare
PS417_05065 -0.7 -1.1 hypothetical protein compare
PS417_08225 -0.7 -2.5 acetolactate synthase compare
PS417_09545 -0.7 -1.3 aldehyde-activating protein compare
PS417_08435 -0.7 -1.2 pilus assembly protein PilZ compare
PS417_11055 -0.7 -2.0 AraC family transcriptional regulator compare
PS417_00385 -0.7 -0.8 Fur family transcriptional regulator compare
PS417_12485 -0.7 -2.3 hypothetical protein compare
PS417_21865 -0.7 -1.9 hypothetical protein compare
PS417_03380 -0.7 -0.7 hypothetical protein compare
PS417_00405 -0.7 -4.2 DNA polymerase I compare
PS417_18020 -0.7 -1.2 hypothetical protein compare
PS417_08420 -0.7 -2.8 lipoprotein compare
PS417_25275 -0.7 -1.8 hypothetical protein compare
PS417_05155 -0.7 -2.0 DNA polymerase III subunit chi compare
PS417_02560 -0.7 -1.0 23S rRNA methyltransferase compare
PS417_21870 -0.7 -1.7 glycerophosphodiester phosphodiesterase compare
PS417_13795 -0.7 -3.3 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_01955 -0.7 -3.4 peptidase compare
PS417_15305 -0.7 -1.2 type VI secretion protein compare
PS417_13725 -0.7 -2.2 membrane protein compare
PS417_12105 -0.7 -3.1 ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms