Experiment set7IT006 for Pseudomonas simiae WCS417

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

200 most important genes:

  gene name fitness t score description  
PS417_20985 -5.1 -4.9 porin compare
PS417_24155 -4.8 -5.6 ATP-binding protein compare
PS417_24745 -4.1 -7.4 gamma-glutamyl phosphate reductase compare
PS417_23545 -4.0 -4.3 gamma-glutamyl kinase compare
PS417_02415 -3.8 -9.4 phosphoserine phosphatase compare
PS417_27040 -3.8 -4.6 3-phosphoglycerate dehydrogenase compare
PS417_27195 -3.5 -2.5 N-acetylglutamate synthase compare
PS417_00185 -3.4 -6.8 tryptophan synthase subunit beta compare
PS417_02510 -3.4 -9.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_06200 -3.4 -9.4 protein-PII uridylyltransferase compare
PS417_02000 -3.4 -18.3 glutamate synthase compare
PS417_01605 -3.4 -2.9 phosphoglycerate mutase compare
PS417_02005 -3.3 -15.2 glutamate synthase compare
PS417_23770 -3.2 -3.7 exodeoxyribonuclease V subunit alpha compare
PS417_00180 -3.2 -4.6 tryptophan synthase subunit alpha compare
PS417_05595 -3.1 -9.8 ornithine carbamoyltransferase compare
PS417_27795 -3.1 -1.5 orotate phosphoribosyltransferase compare
PS417_01640 -2.9 -6.1 histidine kinase compare
PS417_01635 -2.9 -9.2 nitrogen regulation protein NR(I) compare
PS417_26730 -2.8 -1.4 pyrroline-5-carboxylate reductase compare
PS417_27435 -2.8 -8.6 polyphosphate kinase compare
PS417_06375 -2.7 -1.3 deoxycytidine triphosphate deaminase compare
PS417_08125 -2.7 -2.3 prephenate dehydratase compare
PS417_01565 -2.6 -9.0 imidazole glycerol phosphate synthase compare
PS417_01575 -2.5 -8.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01850 -2.4 -8.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23810 -2.4 -15.5 acetolactate synthase 3 catalytic subunit compare
PS417_23800 -2.3 -10.4 ketol-acid reductoisomerase compare
PS417_18560 -2.3 -8.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_07170 -2.3 -3.8 hypothetical protein compare
PS417_04380 -2.3 -3.1 ABC transporter permease compare
PS417_18600 -2.2 -3.8 isopropylmalate isomerase compare
PS417_25715 -2.2 -5.5 anthranilate phosphoribosyltransferase compare
PS417_01855 -2.2 -4.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_20160 -2.2 -3.0 cysteine synthase compare
PS417_22690 -2.2 -4.7 phosphogluconate dehydratase compare
PS417_01560 -2.1 -2.4 imidazoleglycerol-phosphate dehydratase compare
PS417_01580 -2.0 -2.4 imidazole glycerol phosphate synthase compare
PS417_21510 -2.0 -2.6 histidine kinase compare
PS417_23805 -2.0 -7.6 acetolactate synthase 3 regulatory subunit compare
PS417_26890 -2.0 -6.9 dihydroxy-acid dehydratase compare
PS417_04420 -1.9 -10.5 histidinol dehydrogenase compare
PS417_03310 -1.9 -6.6 carbonate dehydratase compare
PS417_08230 -1.9 -2.7 lipopolysaccharide biosynthesis protein RfbH compare
PS417_04415 -1.9 -8.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_26745 -1.9 -6.6 methionine biosynthesis protein MetW compare
PS417_01570 -1.9 -3.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_07165 -1.9 -4.7 dihydrodipicolinate synthase compare
PS417_08220 -1.9 -1.8 epimerase compare
PS417_25720 -1.8 -6.7 anthranilate synthase component II compare
PS417_20125 -1.8 -4.7 phosphoribosylglycinamide formyltransferase compare
PS417_25725 -1.8 -10.3 anthranilate synthase component I compare
PS417_26740 -1.7 -9.5 homoserine acetyltransferase compare
PS417_22450 -1.7 -2.0 ATP-dependent DNA helicase RuvA compare
PS417_03560 -1.7 -2.6 GTP-binding protein compare
PS417_26995 -1.7 -6.9 phosphoserine phosphatase compare
PS417_08245 -1.7 -2.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_08185 -1.6 -5.1 glycosyl transferase compare
PS417_12290 -1.6 -8.8 sulfite reductase compare
PS417_04875 -1.6 -2.2 molybdenum cofactor biosynthesis protein MoaE compare
PS417_21125 -1.6 -5.5 phosphoadenosine phosphosulfate reductase compare
PS417_27870 -1.6 -5.6 ATP-dependent DNA helicase RecG compare
PS417_22850 -1.6 -8.5 virulence factor family protein compare
PS417_04365 -1.6 -1.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_14725 -1.6 -6.4 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
PS417_28220 -1.5 -3.4 LysR family transcriptional regulator compare
PS417_22845 -1.5 -11.6 membrane protein compare
PS417_18310 -1.5 -2.5 hypothetical protein compare
PS417_16465 -1.5 -6.2 sirohydrochlorin ferrochelatase compare
PS417_14730 -1.5 -7.0 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
PS417_23995 -1.4 -1.2 preprotein translocase subunit SecG compare
PS417_05695 -1.4 -5.3 transcriptional regulator compare
PS417_13800 -1.4 -3.6 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_06835 -1.4 -2.3 phospholipase compare
PS417_04275 -1.4 -9.7 hypothetical protein compare
PS417_06895 -1.4 -4.9 DNA-binding protein compare
PS417_04410 -1.3 -2.4 hypothetical protein compare
PS417_18585 -1.3 -4.9 3-isopropylmalate dehydrogenase compare
PS417_18595 -1.3 -3.4 3-isopropylmalate dehydratase compare
PS417_20965 -1.3 -4.7 histidine kinase compare
PS417_09235 -1.3 -1.6 molecular chaperone compare
PS417_08190 -1.3 -9.9 membrane protein compare
PS417_16915 -1.3 -6.2 hemolysin D compare
PS417_08540 -1.3 -3.5 RNA helicase compare
PS417_23315 -1.3 -1.6 transcriptional regulator compare
PS417_04270 -1.3 -6.9 ribonuclease G compare
PS417_18425 -1.2 -2.4 sporulation protein compare
PS417_26990 -1.2 -1.8 RNA pyrophosphohydrolase compare
PS417_09085 -1.2 -1.8 hypothetical protein compare
PS417_05975 -1.2 -0.9 chemotaxis protein CheW compare
PS417_02815 -1.2 -2.9 urea ABC transporter ATP-binding protein compare
PS417_23380 -1.2 -3.2 cytochrome o ubiquinol oxidase subunit III compare
PS417_19605 -1.2 -2.1 hypothetical protein compare
PS417_06530 -1.2 -2.9 membrane protein compare
PS417_23370 -1.2 -3.6 protoheme IX farnesyltransferase compare
PS417_26470 -1.2 -2.2 cytochrome C compare
PS417_19275 -1.2 -1.6 hypothetical protein compare
PS417_17610 -1.2 -2.6 AsnC family transcriptional regulator compare
PS417_18530 -1.2 -5.5 O-succinylhomoserine sulfhydrylase compare
PS417_08195 -1.2 -7.5 hypothetical protein compare
PS417_23110 -1.2 -5.0 2-isopropylmalate synthase compare
PS417_12855 -1.2 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_22840 -1.1 -2.1 tRNA-Met compare
PS417_08205 -1.1 -2.7 acetyltransferase compare
PS417_08155 -1.1 -1.5 integration host factor subunit beta compare
PS417_08200 -1.1 -3.5 hypothetical protein compare
PS417_02270 -1.1 -3.4 carbamoyltransferase compare
PS417_10220 -1.1 -4.7 hypothetical protein compare
PS417_23950 -1.1 -2.8 polynucleotide phosphorylase/polyadenylase compare
PS417_13790 -1.1 -3.9 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_01510 -1.1 -1.8 hypothetical protein compare
PS417_12695 -1.1 -3.3 mannitol dehydrogenase compare
PS417_15805 -1.1 -1.9 transporter compare
PS417_05885 -1.1 -5.6 potassium transporter Kup compare
PS417_17215 -1.1 -3.6 peptidylprolyl isomerase compare
PS417_14115 -1.1 -5.3 molybdate ABC transporter substrate-binding protein compare
PS417_08410 -1.0 -2.2 hypothetical protein compare
PS417_13010 -1.0 -2.1 alpha/beta hydrolase compare
PS417_02555 -1.0 -7.7 exoribonuclease R compare
PS417_08225 -1.0 -5.1 acetolactate synthase compare
PS417_20665 -1.0 -4.6 hypothetical protein compare
PS417_03815 -1.0 -2.8 DNA transporter compare
PS417_11175 -1.0 -1.8 AraC family transcriptional regulator compare
PS417_18540 -1.0 -2.6 colicin V production CvpA compare
PS417_14065 -1.0 -4.4 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_24615 -1.0 -1.1 hypothetical protein compare
PS417_04650 -1.0 -1.1 D-alanine--D-alanine ligase compare
PS417_17240 -1.0 -2.1 trigger factor compare
PS417_19625 -0.9 -3.8 histidine kinase compare
PS417_22565 -0.9 -1.2 formyltetrahydrofolate deformylase compare
PS417_21625 -0.9 -1.3 DNA-binding protein compare
PS417_22445 -0.9 -2.6 ATP-dependent DNA helicase RuvB compare
PS417_14735 -0.9 -4.2 Nitrate reductase (EC 1.7.99.4) (from data) compare
PS417_05790 -0.9 -2.9 hypothetical protein compare
PS417_21285 -0.9 -2.7 hypothetical protein compare
PS417_07000 -0.9 -2.0 hypothetical protein compare
PS417_28070 -0.9 -4.9 phosphate ABC transporter ATP-binding protein compare
PS417_06540 -0.9 -1.4 membrane protein compare
PS417_08670 -0.9 -2.9 molybdopterin biosynthesis protein B compare
PS417_25710 -0.9 -0.5 indole-3-glycerol-phosphate synthase compare
PS417_20650 -0.9 -5.1 hypothetical protein compare
PS417_26695 -0.9 -1.2 uracil phosphoribosyltransferase compare
PS417_04865 -0.9 -2.8 molybdenum cofactor biosynthesis protein MoaC compare
PS417_25650 -0.9 -3.1 anhydro-N-acetylmuramic acid kinase compare
PS417_27245 -0.9 -3.1 aminotransferase DegT compare
PS417_21395 -0.9 -4.3 radical SAM protein compare
PS417_00160 -0.9 -2.8 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_09865 -0.9 -1.7 hypothetical protein compare
PS417_07615 -0.9 -4.7 TetR family transcriptional regulator compare
PS417_07470 -0.9 -1.2 hypothetical protein compare
PS417_13885 -0.8 -2.2 chemotaxis protein CheY compare
PS417_13820 -0.8 -4.6 UDP-glucose 6-dehydrogenase compare
PS417_02365 -0.8 -2.2 hypothetical protein compare
PS417_08665 -0.8 -3.5 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_14935 -0.8 -2.6 transposase compare
PS417_02950 -0.8 -2.3 tRNA-dihydrouridine synthase B compare
PS417_22195 -0.8 -3.9 peptidase compare
PS417_15915 -0.8 -1.2 hypothetical protein compare
PS417_18040 -0.8 -1.6 general secretion pathway protein GspN compare
PS417_27865 -0.8 -1.9 LysR family transcriptional regulator compare
PS417_20950 -0.8 -2.3 hypothetical protein compare
PS417_06095 -0.8 -1.6 energy transducer TonB compare
PS417_25120 -0.8 -3.0 capsular biosynthesis protein compare
PS417_17930 -0.8 -1.8 aldehyde dehydrogenase compare
PS417_22815 -0.8 -5.0 permease compare
PS417_01710 -0.8 -2.8 histidine utilization repressor compare
PS417_19645 -0.8 -2.2 chemotaxis protein compare
PS417_14805 -0.8 -1.7 AraC family transcriptional regulator compare
PS417_23375 -0.8 -1.7 cytochrome C oxidase compare
PS417_05160 -0.8 -0.8 DNA polymerase III subunit chi compare
PS417_22050 -0.8 -3.8 ribonuclease BN compare
PS417_16475 -0.8 -2.0 camphor resistance protein CrcB compare
PS417_06680 -0.8 -4.9 nuclease PIN compare
PS417_25790 -0.8 -4.3 aminoglycoside phosphotransferase compare
PS417_24800 -0.8 -4.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_25390 -0.8 -3.1 MFS transporter compare
PS417_22620 -0.8 -2.0 pyruvate kinase compare
PS417_05010 -0.8 -1.3 IclR family transcriptional regulator compare
PS417_13510 -0.8 -1.1 polyketide cyclase compare
PS417_10100 -0.8 -2.9 hypothetical protein compare
PS417_04585 -0.8 -1.7 hypothetical protein compare
PS417_13165 -0.8 -1.4 peroxidase compare
PS417_00705 -0.8 -1.1 MarR family transcriptional regulator compare
PS417_13795 -0.8 -2.8 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_20340 -0.8 -1.2 hypothetical protein compare
PS417_14120 -0.8 -3.8 molybdenum ABC transporter permease compare
PS417_20130 -0.7 -4.7 dehydrogenase compare
PS417_22535 -0.7 -2.7 ornithine acetyltransferase compare
PS417_06355 -0.7 -2.0 protein-L-isoaspartate O-methyltransferase compare
PS417_23385 -0.7 -3.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_01095 -0.7 -1.2 amino acid ABC transporter ATP-binding protein compare
PS417_15215 -0.7 -1.7 protein activator of alkane oxidation PraA compare
PS417_25765 -0.7 -1.4 transcriptional regulator compare
PS417_26335 -0.7 -2.4 BetI family transcriptional regulator compare
PS417_27010 -0.7 -5.1 threonine dehydratase compare
PS417_04390 -0.7 -2.9 toluene tolerance protein compare
PS417_22520 -0.7 -2.1 histidine kinase compare
PS417_01955 -0.7 -4.2 peptidase compare
PS417_17925 -0.7 -1.1 acyl-CoA dehydrogenase compare
PS417_21515 -0.7 -4.0 transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For supernatant Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms