Experiment set7IT006 for Agrobacterium fabrum C58

Compare to:

Sucrose carbon source

200 most important genes:

  gene name fitness t score description  
Atu1844 -7.5 -5.2 Phosphoribosylformylglycinamidine synthetase compare
Atu1308 -7.3 -5.0 aspartate carbamoyl transferase catalytic subunit compare
Atu1845 -7.1 -5.1 phosphoribosylformylglycinamidine synthase I compare
Atu3707 -7.0 -4.8 phosphoserine aminotransferase compare
Atu1075 -6.9 -6.7 amidophosphoribosyltransferase compare
Atu1140 -6.6 -6.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2726 -6.4 -26.0 pyruvate carboxylase compare
Atu2791 -6.3 -11.4 3-isopropylmalate dehydrogenase compare
Atu2264 -6.2 -18.4 2-isopropylmalate synthase compare
Atu3706 -6.2 -11.1 D-3-phosphoglycerate dehydrogenase compare
Atu0038 -6.2 -6.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0486 -6.1 -6.0 dihydroorotate dehydrogenase compare
Atu3783 -6.1 -21.7 glutamate synthase subunit beta compare
Atu0099 -6.1 -15.4 prephenate dehydratase compare
Atu1307 -6.1 -7.2 dihydroorotase compare
Atu2036 -6.1 -19.3 acetolactate synthase III, large subunit compare
Atu1588 -6.0 -12.4 homoserine dehydrogenase compare
Atu2650 -6.0 -14.0 glycerol-3-phosphate dehydrogenase compare
Atu2274 -6.0 -12.8 cation efflux system protein compare
Atu2709 -5.9 -20.9 3-isopropylmalate dehydratase, large subunit compare
Atu2040 -5.9 -8.0 phosphoserine phosphatase compare
Atu0432 -5.9 -8.2 O-succinylhomoserine sulfhydrylase compare
Atu0043 -5.8 -4.0 imidazoleglycerol-phosphate dehydratase compare
Atu2289 -5.8 -21.6 anthranilate synthase component I and II compare
Atu1687 -5.8 -10.4 anthranilate phosphoribosyltransferase compare
Atu0679 -5.8 -6.5 ATP phosphoribosyltransferase compare
Atu2718 -5.7 -11.0 homoserine O-succinyltransferase compare
Atu0400 -5.7 -4.0 orotate phosphoribosyltransferase compare
Atu0298 -5.7 -5.6 orotidine 5 compare
Atu0678 -5.7 -8.7 histidyl-tRNA synthetase compare
Atu1205 -5.7 -19.2 threonine dehydratase compare
Atu1688 -5.6 -7.7 indole-3-glycerol-phosphate synthase compare
Atu1750 -5.6 -8.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu0647 -5.5 -6.5 phosphoribosylamine--glycine ligase compare
Atu0041 -5.5 -3.8 glutamine amidotransferase compare
Atu3784 -5.4 -27.4 glutamate synthase large subunit compare
Atu3885 -5.2 -13.9 inositol monophosphatase compare
Atu2155 -5.2 -24.9 methionine synthase compare
Atu0537 -5.2 -10.6 histidinol dehydrogenase compare
Atu2790 -5.1 -3.9 3-isopropylmalate dehydratase, small subunit compare
Atu3755 -5.0 -8.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1850 -5.0 -5.8 phosphoribosylformylglycinamidine synthetase II compare
Atu0039 -5.0 -3.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu3754 -4.8 -10.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3469 -4.7 -4.5 phosphoglyceromutase compare
Atu0399 -4.6 -6.3 dihydroorotase compare
Atu2747 -4.5 -14.1 hypothetical protein compare
Atu1141 -4.3 -7.0 Phosphoribosylglycinamide synthetase compare
Atu1446 -4.1 -3.8 two component response regulator compare
Atu0017 -4.1 -5.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3739 -4.0 -5.2 phosphoglycerate kinase compare
Atu2548 -3.7 -18.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu2015 -3.7 -16.6 aminotransferase compare
Atu0040 -3.7 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0641 -3.6 -5.6 hypothetical protein compare
Atu0184 -3.6 -4.2 glucokinase compare
Atu1686 -3.5 -19.1 peptidyl-prolyl cis-trans isomerse D compare
Atu0598 -3.4 -14.2 phosphogluconate dehydratase compare
Atu4616 -3.4 -4.1 dTDP-4-dehydrorhamnose reductase compare
Atu1685 -3.4 -2.2 hypothetical protein compare
Atu0595 -3.3 -15.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu1456 -3.2 -15.5 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1454 -3.1 -10.1 siroheme synthase compare
Atu1589 -3.0 -9.4 aminotransferase, class I compare
Atu3482 -3.0 -11.1 pantoate--beta-alanine ligase compare
Atu1620 -2.9 -13.4 triosephosphate isomerase compare
Atu3483 -2.9 -7.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1030 -2.8 -2.3 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1455 -2.7 -3.5 hypothetical protein compare
Atu0591 -2.5 -12.8 ABC transporter, substrate binding protein (alpha-glucoside) compare
Atu0723 -2.5 -3.2 FAD dependent oxidoreductase compare
Atu0401 -2.5 -8.3 fructokinase compare
Atu2123 -2.5 -8.4 methylenetetrahydrofolate reductase compare
Atu0031 -2.4 -2.0 PTS system, IIA component compare
Atu0346 -2.3 -3.1 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0593 -2.2 -9.6 ABC transporter, membrane spanning protein compare
Atu2684 -2.2 -2.7 hypothetical protein compare
Atu0029 -2.0 -6.4 S-adenosylhomocysteine hydrolase compare
Atu3731 -1.9 -7.1 5-formyltetrahydrofolate cyclo-ligase compare
Atu0592 -1.9 -6.9 ABC transporter, membrane spanning protein compare
Atu0332 -1.8 -9.6 RNA polymerase sigma-54 factor compare
Atu0354 -1.7 -2.4 ferric uptake regulator compare
Atu1462 -1.7 -11.5 glycine cleavage system protein P2 compare
Atu4613 -1.6 -11.7 glycosyltransferase compare
Atu4618 -1.6 -10.7 dTDP-rhamnose-3,5-epimerase compare
Atu0030 -1.5 -2.4 phosphocarrier protein HPr compare
Atu1464 -1.5 -4.9 glycine cleavage system T protein, aminomethyltransferase compare
Atu1604 -1.5 -10.7 poly-beta-hydroxybutyrate synthase compare
Atu1457 -1.5 -1.4 hypothetical protein compare
Atu4617 -1.5 -9.6 dTDP-D-glucose-4,6-dehydratase compare
Atu4075 -1.5 -7.7 glycogen synthase compare
Atu1463 -1.4 -7.8 glycine cleavage system component H compare
Atu0594 -1.4 -7.8 alpha-glucosidase conserved
Atu4614 -1.4 -7.3 glycosyltransferase compare
Atu5045 -1.4 -2.1 hypothetical protein compare
Atu8115 -1.3 -3.9 Hypothetical Protein compare
Atu4317 -1.3 -4.5 TetR family transcriptional regulator compare
Atu0422 -1.3 -2.5 ABC transporter, membrane spanning protein compare
Atu2376 -1.3 -1.1 hypothetical protein compare
Atu4711 -1.3 -6.4 two component sensor kinase compare
Atu4166 -1.2 -2.4 UDP-glucose 4-epimerase compare
Atu2209 -1.2 -3.3 pyrroline-5-carboxylate reductase compare
Atu4615 -1.2 -6.9 glucose-1-phosphate thymidylyltransferase compare
Atu0434 -1.2 -2.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0185 -1.2 -2.7 methylglyoxal synthase compare
Atu3730 -1.1 -1.8 hypothetical protein compare
Atu1359 -1.1 -1.2 dnaK deletion suppressor protein compare
Atu3353 -1.1 -6.9 mannose-1-phosphate guanylyltransferase compare
Atu2183 -1.1 -5.9 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu3311 -1.0 -8.3 phosphomannose isomerase compare
Atu1163 -1.0 -1.5 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0189 -1.0 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu3468 -1.0 -1.0 hypothetical protein compare
Atu6039 -0.9 -2.8 conjugal transfer protein compare
Atu4418 -0.9 -4.0 glutaryl-CoA dehydrogenase compare
Atu0190 -0.9 -4.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1291 -0.9 -2.6 hypothetical protein compare
Atu0971 -0.9 -3.8 two component sensor kinase compare
Atu5146 -0.9 -2.0 hypothetical protein compare
Atu1028 -0.9 -1.8 hypothetical protein compare
Atu0895 -0.9 -2.5 ABC transporter, substrate binding protein compare
Atu2205 -0.9 -3.7 transcriptional regulator, MarR family compare
Atu0677 -0.8 -1.7 hypothetical protein compare
Atu1874 -0.8 -2.8 RecA protein compare
Atu3120 -0.8 -1.3 hypothetical protein compare
Atu3496 -0.8 -2.7 hypothetical protein compare
Atu1445 -0.8 -2.6 two component sensor kinase compare
Atu2694 -0.8 -2.7 hypothetical protein compare
Atu1182 -0.7 -1.4 hypothetical protein compare
Atu2728 -0.7 -2.8 beta (1-->2) glucan export ATP-binding protein compare
Atu4173 -0.7 -2.2 phosphoenolpyruvate-protein phosphotransferase compare
Atu0026 -0.7 -0.9 hypothetical protein compare
Atu1774 -0.7 -4.4 ABC transporter, substrate binding protein (peptide) compare
Atu0977 -0.7 -2.9 serine protease DO-like protease compare
Atu3740 -0.7 -3.9 fructose bisphosphate aldolase compare
Atu2200 -0.7 -2.0 cold shock protein compare
Atu0153 -0.7 -2.7 transcriptional regulator, Fur family compare
Atu0845 -0.7 -3.7 hypothetical protein compare
Atu5449 -0.6 -2.2 heat-shock protein compare
Atu1572 -0.6 -3.0 hydrolase compare
Atu6114 -0.6 -1.6 hypothetical protein compare
Atu0528 -0.6 -1.9 large conductance mechanosensitive channel protein compare
Atu5057 -0.6 -0.8 hypothetical protein compare
Atu1254 -0.6 -1.0 transcriptional regulator, ArsR family compare
Atu0361 -0.6 -1.6 transcriptional regulator compare
Atu2379 -0.6 -4.1 phosphomannomutase compare
Atu4406 -0.6 -1.9 periplasmic nitrate reductase, ferredoxin-like protein compare
Atu6197 -0.6 -2.2 agrocinopine phosphodiesterase compare
Atu0188 -0.6 -2.4 ABC transporter, membrane spanning protein (peptide) compare
Atu8020 -0.6 -2.5 hypothetical protein compare
Atu1714 -0.6 -1.2 exonuclease III compare
Atu0690 -0.6 -1.6 hypothetical protein compare
Atu0427 -0.6 -2.3 hypothetical protein compare
Atu0421 -0.6 -0.9 ABC transporter, membrane spanning protein compare
Atu3426 -0.6 -4.7 sulfonate monooxygenase compare
Atu1327 -0.6 -1.2 NADH-ubiquinone oxidoreductase compare
Atu4773 -0.6 -1.0 two component response regulator compare
Atu2127 -0.6 -2.9 L-carnitine dehydratase compare
Atu4072 -0.6 -1.1 nodulation protein N compare
Atu5489 -0.6 -1.8 hypothetical protein compare
Atu2831 -0.6 -2.0 glucose inhibited division protein A compare
Atu2491 -0.6 -1.0 hypothetical protein compare
Atu8063 -0.5 -1.2 hypothetical protein compare
Atu3313 -0.5 -2.0 hypothetical protein compare
Atu2770 -0.5 -2.2 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu5429 -0.5 -1.8 transcriptional regulator compare
Atu3486 -0.5 -2.0 DeoR family transcriptional regulator compare
Atu8046 -0.5 -1.5 hypothetical protein compare
Atu5160 -0.5 -1.7 transcriptional regulator protein compare
Atu0846 -0.5 -2.6 transcriptional regulator, MarR family compare
Atu5010 -0.5 -1.2 hypothetical protein compare
Atu5107 -0.5 -1.3 hypothetical protein compare
Atu5513 -0.5 -1.0 cold shock protein compare
Atu2746 -0.5 -2.4 hypothetical protein compare
Atu4608 -0.5 -4.0 hypothetical protein compare
Atu5075 -0.5 -2.6 GntR family transcriptional regulator compare
Atu1056 -0.5 -2.0 hypothetical protein compare
Atu2125 -0.5 -0.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu1546 -0.5 -1.8 transcriptional regulator, MerR family compare
Atu0703 -0.5 -1.7 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1916 -0.5 -2.3 hypothetical protein compare
Atu2192 -0.5 -1.0 hypothetical protein compare
Atu1435 -0.5 -1.3 hypothetical protein compare
Atu2115 -0.5 -3.4 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2495 -0.5 -1.6 flavoprotein oxidoreductase compare
Atu5157 -0.5 -1.6 hypothetical protein compare
Atu5028 -0.5 -1.3 IS426 transposase compare
Atu4068 -0.5 -1.7 sarcosine oxidase delta subunit compare
Atu5464 -0.5 -2.9 IclR family transcriptional regulator compare
Atu6195 -0.5 -1.2 conserved hypothetical protein compare
Atu0885 -0.5 -1.2 hypothetical protein compare
Atu5166 -0.5 -2.3 type IV secretion protein AvhB5 compare
Atu2406 -0.5 -1.3 hypothetical protein compare
Atu1258 -0.4 -1.7 ATP-dependent Clp protease, proteolytic subunit compare
Atu0479 -0.4 -1.9 ABC transporter, substrate binding protein (amino acid) compare
Atu5540 -0.4 -0.4 hypothetical protein compare
Atu4161 -0.4 -1.1 hypothetical protein compare
Atu0687 -0.4 -1.0 hypothetical protein compare
Atu2640 -0.4 -1.6 hypothetical protein compare
Atu5114 -0.4 -1.5 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sucrose in Agrobacterium fabrum C58

For carbon source Sucrose across organisms