Experiment set7IT005 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_glucose with MS_media 1x

200 most important genes:

  gene name fitness t score description  
PS417_24155 -5.6 -6.7 ATP-binding protein compare
PS417_01605 -4.9 -3.4 phosphoglycerate mutase compare
PS417_24745 -4.7 -7.1 gamma-glutamyl phosphate reductase compare
PS417_27795 -4.2 -1.5 orotate phosphoribosyltransferase compare
PS417_20985 -4.0 -5.5 porin compare
PS417_27040 -3.9 -4.1 3-phosphoglycerate dehydrogenase compare
PS417_02510 -3.8 -9.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_08125 -3.6 -2.2 prephenate dehydratase compare
PS417_05595 -3.5 -9.9 ornithine carbamoyltransferase compare
PS417_27195 -3.4 -2.5 N-acetylglutamate synthase compare
PS417_02415 -3.4 -5.1 phosphoserine phosphatase compare
PS417_23995 -3.2 -1.7 preprotein translocase subunit SecG compare
PS417_01855 -3.1 -4.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_28220 -3.1 -3.5 LysR family transcriptional regulator compare
PS417_20160 -3.0 -3.6 cysteine synthase compare
PS417_27435 -3.0 -10.6 polyphosphate kinase compare
PS417_01565 -3.0 -9.3 imidazole glycerol phosphate synthase compare
PS417_01575 -3.0 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23545 -2.9 -3.0 gamma-glutamyl kinase compare
PS417_00180 -2.9 -5.6 tryptophan synthase subunit alpha compare
PS417_01850 -2.8 -7.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_00185 -2.8 -5.0 tryptophan synthase subunit beta compare
PS417_26730 -2.8 -1.4 pyrroline-5-carboxylate reductase compare
PS417_04415 -2.7 -9.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_04420 -2.5 -10.7 histidinol dehydrogenase compare
PS417_22690 -2.5 -6.0 phosphogluconate dehydratase compare
PS417_23950 -2.4 -3.4 polynucleotide phosphorylase/polyadenylase compare
PS417_23800 -2.4 -9.5 ketol-acid reductoisomerase compare
PS417_01570 -2.4 -3.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_23805 -2.3 -7.9 acetolactate synthase 3 regulatory subunit compare
PS417_20125 -2.3 -5.8 phosphoribosylglycinamide formyltransferase compare
PS417_27585 -2.2 -4.5 diaminopimelate epimerase compare
PS417_01580 -2.1 -1.6 imidazole glycerol phosphate synthase compare
PS417_26995 -2.1 -10.3 phosphoserine phosphatase compare
PS417_12855 -2.0 -5.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_06375 -2.0 -1.2 deoxycytidine triphosphate deaminase compare
PS417_10015 -1.9 -2.0 hypothetical protein compare
PS417_09235 -1.9 -1.9 molecular chaperone compare
PS417_23810 -1.9 -12.7 acetolactate synthase 3 catalytic subunit compare
PS417_02005 -1.9 -10.0 glutamate synthase compare
PS417_23770 -1.9 -3.4 exodeoxyribonuclease V subunit alpha compare
PS417_22450 -1.9 -2.8 ATP-dependent DNA helicase RuvA compare
PS417_18560 -1.9 -6.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_27870 -1.9 -4.6 ATP-dependent DNA helicase RecG compare
PS417_26890 -1.8 -6.7 dihydroxy-acid dehydratase compare
PS417_23775 -1.8 -3.0 exodeoxyribonuclease V subunit beta compare
PS417_02000 -1.8 -10.3 glutamate synthase compare
PS417_07170 -1.8 -3.5 hypothetical protein compare
PS417_26745 -1.7 -6.8 methionine biosynthesis protein MetW compare
PS417_18530 -1.7 -5.6 O-succinylhomoserine sulfhydrylase compare
PS417_12290 -1.6 -6.1 sulfite reductase compare
PS417_27835 -1.6 -7.6 endoribonuclease compare
PS417_18690 -1.6 -4.5 aromatic amino acid aminotransferase compare
PS417_25715 -1.6 -4.9 anthranilate phosphoribosyltransferase compare
PS417_01560 -1.6 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_21625 -1.6 -1.8 DNA-binding protein compare
PS417_26740 -1.5 -7.0 homoserine acetyltransferase compare
PS417_04585 -1.5 -1.6 hypothetical protein compare
PS417_08220 -1.5 -1.5 epimerase compare
PS417_26695 -1.5 -1.6 uracil phosphoribosyltransferase compare
PS417_22990 -1.5 -2.0 iron dicitrate transport regulator FecR compare
PS417_18600 -1.5 -1.9 isopropylmalate isomerase compare
PS417_07165 -1.5 -2.9 dihydrodipicolinate synthase compare
PS417_19605 -1.5 -1.9 hypothetical protein compare
PS417_16465 -1.4 -7.7 sirohydrochlorin ferrochelatase compare
PS417_23110 -1.4 -6.5 2-isopropylmalate synthase compare
PS417_06680 -1.4 -8.2 nuclease PIN compare
PS417_08230 -1.4 -3.4 lipopolysaccharide biosynthesis protein RfbH compare
PS417_02555 -1.4 -10.9 exoribonuclease R compare
PS417_18585 -1.3 -5.0 3-isopropylmalate dehydrogenase compare
PS417_22620 -1.2 -4.2 pyruvate kinase compare
PS417_09865 -1.2 -2.2 hypothetical protein compare
PS417_02805 -1.2 -1.9 urease subunit gamma compare
PS417_04650 -1.2 -1.5 D-alanine--D-alanine ligase compare
PS417_13645 -1.2 -3.2 ABC transporter compare
PS417_13510 -1.2 -1.4 polyketide cyclase compare
PS417_25725 -1.2 -5.9 anthranilate synthase component I compare
PS417_00195 -1.2 -2.6 hypothetical protein compare
PS417_06645 -1.2 -7.0 RNA polymerase-associated protein RapA compare
PS417_18595 -1.1 -2.0 3-isopropylmalate dehydratase compare
PS417_12375 -1.1 -2.5 serine/threonine protein phosphatase compare
PS417_21125 -1.1 -4.7 phosphoadenosine phosphosulfate reductase compare
PS417_08245 -1.1 -1.6 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_22840 -1.1 -2.3 tRNA-Met compare
PS417_08135 -1.1 -5.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_11175 -1.1 -1.8 AraC family transcriptional regulator compare
PS417_27935 -1.1 -1.7 type VI secretion protein compare
PS417_08540 -1.1 -3.0 RNA helicase compare
PS417_22520 -1.1 -2.9 histidine kinase compare
PS417_20635 -1.1 -1.1 ABC transporter ATP-binding protein compare
PS417_00175 -1.0 -1.2 CigR compare
PS417_03560 -1.0 -2.0 GTP-binding protein compare
PS417_08190 -1.0 -6.6 membrane protein compare
PS417_27865 -1.0 -1.8 LysR family transcriptional regulator compare
PS417_10220 -1.0 -3.7 hypothetical protein compare
PS417_04410 -1.0 -1.5 hypothetical protein compare
PS417_26990 -1.0 -1.4 RNA pyrophosphohydrolase compare
PS417_01095 -1.0 -1.7 amino acid ABC transporter ATP-binding protein compare
PS417_25720 -1.0 -2.7 anthranilate synthase component II compare
PS417_06895 -1.0 -3.2 DNA-binding protein compare
PS417_08205 -1.0 -2.9 acetyltransferase compare
PS417_04375 -1.0 -2.4 ABC transporter ATP-binding protein compare
PS417_03310 -1.0 -3.1 carbonate dehydratase compare
PS417_06540 -1.0 -1.7 membrane protein compare
PS417_28230 -0.9 -1.8 transcriptional regulator compare
PS417_23095 -0.9 -1.1 exodeoxyribonuclease compare
PS417_19645 -0.9 -1.5 chemotaxis protein compare
PS417_03100 -0.9 -1.4 pilus assembly protein compare
PS417_24840 -0.9 -1.1 hypothetical protein compare
PS417_06355 -0.9 -2.4 protein-L-isoaspartate O-methyltransferase compare
PS417_16560 -0.9 -2.3 GNAT family acetyltransferase compare
PS417_01825 -0.9 -2.0 chemotaxis protein compare
PS417_22445 -0.9 -2.6 ATP-dependent DNA helicase RuvB compare
PS417_21140 -0.9 -3.5 LysR family transcriptional regulator compare
PS417_08185 -0.9 -3.6 glycosyl transferase compare
PS417_05790 -0.9 -3.4 hypothetical protein compare
PS417_17610 -0.9 -1.7 AsnC family transcriptional regulator compare
PS417_25710 -0.9 -0.6 indole-3-glycerol-phosphate synthase compare
PS417_04380 -0.9 -1.2 ABC transporter permease compare
PS417_08580 -0.9 -4.2 histidine kinase compare
PS417_04875 -0.9 -1.4 molybdenum cofactor biosynthesis protein MoaE compare
PS417_21705 -0.8 -3.0 arginine N-succinyltransferase compare
PS417_26335 -0.8 -2.2 BetI family transcriptional regulator compare
PS417_06335 -0.8 -2.7 S-formylglutathione hydrolase compare
PS417_20025 -0.8 -1.4 alpha-ribazole phosphatase compare
PS417_04270 -0.8 -4.7 ribonuclease G compare
PS417_14980 -0.8 -0.9 universal stress protein UspA compare
PS417_11585 -0.8 -2.4 LuxR family transcriptional regulator compare
PS417_00385 -0.8 -1.0 Fur family transcriptional regulator compare
PS417_08155 -0.8 -1.6 integration host factor subunit beta compare
PS417_05160 -0.8 -1.1 DNA polymerase III subunit chi compare
PS417_05815 -0.8 -3.2 recombinase RecA compare
PS417_12915 -0.8 -2.9 DNA-binding protein compare
PS417_17070 -0.8 -1.3 RNA polymerase subunit sigma-24 compare
PS417_06745 -0.8 -1.8 polysaccharide deacetylase compare
PS417_19195 -0.8 -1.7 hypothetical protein compare
PS417_04385 -0.8 -3.7 organic solvent ABC transporter substrate-binding protein compare
PS417_19285 -0.8 -1.3 ankyrin compare
PS417_19675 -0.8 -3.0 chemotaxis protein CheY compare
PS417_10955 -0.7 -2.1 porin compare
PS417_09245 -0.7 -0.9 recombinase RdgC compare
PS417_05695 -0.7 -2.7 transcriptional regulator compare
PS417_23205 -0.7 -1.7 transcriptional regulator compare
PS417_14515 -0.7 -1.3 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_08225 -0.7 -2.4 acetolactate synthase compare
PS417_13870 -0.7 -1.3 hypothetical protein compare
PS417_08195 -0.7 -4.8 hypothetical protein compare
PS417_05785 -0.7 -2.9 tail protein compare
PS417_11810 -0.7 -1.2 oxidoreductase compare
PS417_08320 -0.7 -2.2 metal-chelation protein CHAD compare
PS417_22175 -0.7 -1.2 amino acid transporter LysE compare
PS417_06145 -0.7 -1.0 hypothetical protein compare
PS417_06200 -0.7 -3.2 protein-PII uridylyltransferase compare
PS417_12390 -0.7 -1.7 hypothetical protein compare
PS417_12930 -0.7 -1.8 LpxA family transferase compare
PS417_02210 -0.7 -2.9 diguanylate cyclase compare
PS417_26280 -0.7 -1.9 NADPH:quinone reductase compare
PS417_14400 -0.7 -1.8 hypothetical protein compare
PS417_15665 -0.7 -0.9 hypothetical protein compare
PS417_07615 -0.7 -3.5 TetR family transcriptional regulator compare
PS417_06095 -0.7 -1.5 energy transducer TonB compare
PS417_15655 -0.7 -2.7 hypothetical protein compare
PS417_12870 -0.7 -1.3 enoyl-CoA hydratase compare
PS417_17215 -0.7 -2.4 peptidylprolyl isomerase compare
PS417_19650 -0.7 -2.5 chemotaxis protein CheW compare
PS417_15885 -0.7 -1.0 GCN5 family acetyltransferase compare
PS417_22695 -0.7 -4.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_11880 -0.7 -1.4 oxidoreductase compare
PS417_14590 -0.7 -1.3 LysR family transcriptional regulator compare
PS417_04390 -0.6 -2.8 toluene tolerance protein compare
PS417_18370 -0.6 -1.4 hypothetical protein compare
PS417_16845 -0.6 -1.7 monovalent cation/H+ antiporter subunit E compare
PS417_22050 -0.6 -2.6 ribonuclease BN compare
PS417_14935 -0.6 -2.2 transposase compare
PS417_26985 -0.6 -2.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_14140 -0.6 -1.8 membrane protein compare
PS417_22815 -0.6 -3.3 permease compare
PS417_25380 -0.6 -1.1 hypothetical protein compare
PS417_15890 -0.6 -1.5 RNA polymerase sigma factor compare
PS417_10275 -0.6 -1.5 histidine kinase compare
PS417_07710 -0.6 -3.2 membrane protein compare
PS417_23210 -0.6 -1.5 serine acetyltransferase compare
PS417_21000 -0.6 -1.3 CrfX protein compare
PS417_09010 -0.6 -1.3 phosphohistidine phosphatase compare
PS417_23900 -0.6 -3.8 poly(A) polymerase compare
PS417_01965 -0.6 -1.3 fimbriae biosynthesis protein compare
PS417_18060 -0.6 -1.3 general secretion pathway protein GspJ compare
PS417_03815 -0.6 -1.4 DNA transporter compare
PS417_22935 -0.6 -1.5 hypothetical protein compare
PS417_22800 -0.6 -2.3 heme iron utilization protein compare
PS417_19805 -0.6 -1.7 flagellar M-ring protein FliF compare
PS417_10205 -0.6 -2.0 hypothetical protein compare
PS417_05155 -0.6 -1.8 DNA polymerase III subunit chi compare
PS417_08130 -0.6 -1.2 aspartate aminotransferase compare
PS417_00550 -0.6 -0.8 hypothetical protein compare
PS417_08990 -0.6 -2.1 ABC transporter substrate-binding protein compare
PS417_05705 -0.6 -3.0 pyocin R2, holin compare
PS417_23825 -0.6 -2.8 penicillin-binding protein compare
PS417_00975 -0.6 -1.0 hypothetical protein compare
PS417_24775 -0.6 -2.0 dehydratase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in carbon source experiments

For carbon source MS_media across organisms