Experiment set7IT004 for Pseudomonas simiae WCS417

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

200 most important genes:

  gene name fitness t score description  
PS417_24155 -5.3 -7.3 ATP-binding protein compare
PS417_08125 -4.2 -2.2 prephenate dehydratase compare
PS417_27040 -4.2 -3.4 3-phosphoglycerate dehydrogenase compare
PS417_27795 -4.1 -1.5 orotate phosphoribosyltransferase compare
PS417_01605 -4.1 -3.3 phosphoglycerate mutase compare
PS417_24745 -4.0 -5.1 gamma-glutamyl phosphate reductase compare
PS417_28220 -3.8 -3.4 LysR family transcriptional regulator compare
PS417_20985 -3.8 -5.8 porin compare
PS417_05595 -3.7 -10.9 ornithine carbamoyltransferase compare
PS417_23545 -3.5 -2.7 gamma-glutamyl kinase compare
PS417_02415 -3.3 -6.7 phosphoserine phosphatase compare
PS417_20160 -3.3 -3.0 cysteine synthase compare
PS417_27195 -2.9 -1.7 N-acetylglutamate synthase compare
PS417_01575 -2.9 -6.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01855 -2.9 -4.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_01560 -2.9 -3.8 imidazoleglycerol-phosphate dehydratase compare
PS417_04415 -2.9 -9.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_12855 -2.8 -6.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02510 -2.7 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_01580 -2.7 -2.0 imidazole glycerol phosphate synthase compare
PS417_00185 -2.6 -6.4 tryptophan synthase subunit beta compare
PS417_06375 -2.6 -1.3 deoxycytidine triphosphate deaminase compare
PS417_01850 -2.6 -7.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_27435 -2.6 -8.2 polyphosphate kinase compare
PS417_04420 -2.6 -11.4 histidinol dehydrogenase compare
PS417_22690 -2.5 -6.0 phosphogluconate dehydratase compare
PS417_23995 -2.5 -1.5 preprotein translocase subunit SecG compare
PS417_27870 -2.4 -5.1 ATP-dependent DNA helicase RecG compare
PS417_22450 -2.2 -3.2 ATP-dependent DNA helicase RuvA compare
PS417_23810 -2.2 -14.3 acetolactate synthase 3 catalytic subunit compare
PS417_23770 -2.2 -3.0 exodeoxyribonuclease V subunit alpha compare
PS417_01565 -2.2 -5.0 imidazole glycerol phosphate synthase compare
PS417_23800 -2.1 -10.7 ketol-acid reductoisomerase compare
PS417_27835 -2.1 -5.9 endoribonuclease compare
PS417_23805 -2.1 -4.8 acetolactate synthase 3 regulatory subunit compare
PS417_18560 -2.0 -8.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23950 -2.0 -4.1 polynucleotide phosphorylase/polyadenylase compare
PS417_00180 -2.0 -4.8 tryptophan synthase subunit alpha compare
PS417_07170 -1.9 -5.0 hypothetical protein compare
PS417_26995 -1.8 -8.9 phosphoserine phosphatase compare
PS417_20125 -1.8 -5.4 phosphoribosylglycinamide formyltransferase compare
PS417_18600 -1.7 -2.0 isopropylmalate isomerase compare
PS417_18585 -1.7 -3.8 3-isopropylmalate dehydrogenase compare
PS417_08185 -1.6 -4.6 glycosyl transferase compare
PS417_26890 -1.6 -5.1 dihydroxy-acid dehydratase compare
PS417_11400 -1.6 -2.6 phosphoglycerate mutase compare
PS417_04410 -1.5 -2.8 hypothetical protein compare
PS417_06680 -1.5 -7.9 nuclease PIN compare
PS417_04380 -1.5 -2.4 ABC transporter permease compare
PS417_02005 -1.5 -9.5 glutamate synthase compare
PS417_04305 -1.5 -2.3 aspartate ammonia-lyase compare
PS417_02000 -1.5 -10.4 glutamate synthase compare
PS417_12290 -1.5 -6.2 sulfite reductase compare
PS417_26740 -1.4 -6.1 homoserine acetyltransferase compare
PS417_23110 -1.4 -8.0 2-isopropylmalate synthase compare
PS417_18595 -1.4 -3.3 3-isopropylmalate dehydratase compare
PS417_08195 -1.4 -6.8 hypothetical protein compare
PS417_25715 -1.4 -5.6 anthranilate phosphoribosyltransferase compare
PS417_08230 -1.4 -3.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_08190 -1.4 -9.1 membrane protein compare
PS417_10675 -1.4 -1.4 TetR family transcriptional regulator compare
PS417_08220 -1.4 -1.4 epimerase compare
PS417_10015 -1.3 -1.6 hypothetical protein compare
PS417_03560 -1.3 -2.7 GTP-binding protein compare
PS417_18530 -1.3 -6.2 O-succinylhomoserine sulfhydrylase compare
PS417_14710 -1.3 -1.9 isochorismatase compare
PS417_02555 -1.3 -9.8 exoribonuclease R compare
PS417_08205 -1.3 -5.1 acetyltransferase compare
PS417_01570 -1.3 -1.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_16465 -1.3 -8.0 sirohydrochlorin ferrochelatase compare
PS417_26745 -1.3 -4.5 methionine biosynthesis protein MetW compare
PS417_22620 -1.3 -4.3 pyruvate kinase compare
PS417_07165 -1.3 -2.8 dihydrodipicolinate synthase compare
PS417_10220 -1.3 -4.6 hypothetical protein compare
PS417_04585 -1.2 -1.7 hypothetical protein compare
PS417_23105 -1.2 -2.2 hypothetical protein compare
PS417_23915 -1.2 -3.3 pantoate--beta-alanine ligase compare
PS417_25710 -1.2 -1.5 indole-3-glycerol-phosphate synthase compare
PS417_21125 -1.2 -5.4 phosphoadenosine phosphosulfate reductase compare
PS417_12455 -1.2 -2.9 hydrolase compare
PS417_10245 -1.2 -2.1 hypothetical protein compare
PS417_05445 -1.1 -1.6 DNA mismatch repair protein MutT compare
PS417_05155 -1.1 -2.5 DNA polymerase III subunit chi compare
PS417_26685 -1.1 -2.2 hypothetical protein compare
PS417_22520 -1.1 -2.9 histidine kinase compare
PS417_26730 -1.1 -0.9 pyrroline-5-carboxylate reductase compare
PS417_06530 -1.1 -3.3 membrane protein compare
PS417_26695 -1.1 -0.8 uracil phosphoribosyltransferase compare
PS417_06645 -1.0 -5.6 RNA polymerase-associated protein RapA compare
PS417_07615 -1.0 -4.7 TetR family transcriptional regulator compare
PS417_05790 -1.0 -4.0 hypothetical protein compare
PS417_08225 -1.0 -3.9 acetolactate synthase compare
PS417_18040 -1.0 -1.8 general secretion pathway protein GspN compare
PS417_05695 -1.0 -4.3 transcriptional regulator compare
PS417_08200 -1.0 -2.7 hypothetical protein compare
PS417_03310 -1.0 -3.4 carbonate dehydratase compare
PS417_22695 -1.0 -6.2 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_22060 -1.0 -1.3 hypothetical protein compare
PS417_05815 -1.0 -3.2 recombinase RecA compare
PS417_17795 -1.0 -1.6 ABC transporter permease compare
PS417_27585 -1.0 -2.2 diaminopimelate epimerase compare
PS417_23380 -1.0 -2.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_11615 -1.0 -1.5 urea ABC transporter ATP-binding protein compare
PS417_03260 -1.0 -2.0 5S ribosomal RNA compare
PS417_08155 -0.9 -1.0 integration host factor subunit beta compare
PS417_18690 -0.9 -3.6 aromatic amino acid aminotransferase compare
PS417_03815 -0.9 -2.8 DNA transporter compare
PS417_17070 -0.9 -1.8 RNA polymerase subunit sigma-24 compare
PS417_02950 -0.9 -1.7 tRNA-dihydrouridine synthase B compare
PS417_08540 -0.9 -2.7 RNA helicase compare
PS417_18395 -0.9 -2.1 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_02720 -0.9 -1.0 TetR family transcriptional regulator compare
PS417_21630 -0.9 -1.9 magnesium transporter compare
PS417_00085 -0.9 -2.0 16S rRNA methyltransferase compare
PS417_08135 -0.9 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_17240 -0.9 -3.4 trigger factor compare
PS417_11175 -0.9 -2.2 AraC family transcriptional regulator compare
PS417_23910 -0.9 -3.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_06635 -0.9 -1.3 ferredoxin compare
PS417_12375 -0.9 -2.3 serine/threonine protein phosphatase compare
PS417_28050 -0.9 -3.6 hypothetical protein compare
PS417_10480 -0.9 -2.0 glutathione S-transferase compare
PS417_21705 -0.8 -2.4 arginine N-succinyltransferase compare
PS417_05975 -0.8 -0.7 chemotaxis protein CheW compare
PS417_06200 -0.8 -3.2 protein-PII uridylyltransferase compare
PS417_12015 -0.8 -1.5 phosphoglycerate mutase compare
PS417_17215 -0.8 -2.5 peptidylprolyl isomerase compare
PS417_14805 -0.8 -1.2 AraC family transcriptional regulator compare
PS417_08515 -0.8 -2.1 hypothetical protein compare
PS417_15875 -0.8 -1.2 LuxR family transcriptional regulator compare
PS417_15915 -0.8 -1.2 hypothetical protein compare
PS417_13885 -0.8 -2.8 chemotaxis protein CheY compare
PS417_18370 -0.8 -1.9 hypothetical protein compare
PS417_02280 -0.8 -1.7 GlcNAc-PI de-N-acetylase compare
PS417_00755 -0.8 -0.7 biofilm PGA synthesis protein PgaD compare
PS417_19675 -0.8 -2.3 chemotaxis protein CheY compare
PS417_18425 -0.8 -1.6 sporulation protein compare
PS417_01965 -0.8 -1.4 fimbriae biosynthesis protein compare
PS417_03100 -0.8 -1.2 pilus assembly protein compare
PS417_15745 -0.8 -1.5 lipid carrier protein compare
PS417_02105 -0.8 -2.1 acyl carrier protein compare
PS417_08245 -0.8 -1.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_12555 -0.8 -2.8 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_22445 -0.8 -1.7 ATP-dependent DNA helicase RuvB compare
PS417_25225 -0.8 -1.4 MFS transporter compare
PS417_12390 -0.8 -1.9 hypothetical protein compare
PS417_00550 -0.8 -1.0 hypothetical protein compare
PS417_22085 -0.8 -1.4 aldehyde dehydrogenase compare
PS417_08740 -0.8 -1.6 ribose-phosphate pyrophosphokinase compare
PS417_19600 -0.8 -1.0 exonuclease compare
PS417_20030 -0.8 -1.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_01825 -0.8 -1.3 chemotaxis protein compare
PS417_23775 -0.8 -1.0 exodeoxyribonuclease V subunit beta compare
PS417_16490 -0.8 -1.5 cell division protein FtsK compare
PS417_25725 -0.8 -3.9 anthranilate synthase component I compare
PS417_04270 -0.8 -4.9 ribonuclease G compare
PS417_19350 -0.7 -2.1 GTP cyclohydrolase compare
PS417_19935 -0.7 -1.5 hypothetical protein compare
PS417_27800 -0.7 -3.1 exodeoxyribonuclease III compare
PS417_05235 -0.7 -1.6 peptidase inhibitor I42 compare
PS417_22935 -0.7 -2.5 hypothetical protein compare
PS417_07710 -0.7 -3.5 membrane protein compare
PS417_00030 -0.7 -3.2 hypothetical protein compare
PS417_02270 -0.7 -2.7 carbamoyltransferase compare
PS417_09330 -0.7 -2.6 NAD(P)H-quinone oxidoreductase compare
PS417_16750 -0.7 -1.5 ABC transporter ATP-binding protein compare
PS417_22840 -0.7 -1.6 tRNA-Met compare
PS417_16710 -0.7 -2.2 hydrolase compare
PS417_01290 -0.7 -1.4 ADP-ribose diphosphatase compare
PS417_02225 -0.7 -1.6 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_23900 -0.7 -3.8 poly(A) polymerase compare
PS417_15465 -0.7 -1.7 carboxynorspermidine decarboxylase compare
PS417_01620 -0.7 -1.8 preprotein translocase subunit SecB compare
PS417_13510 -0.7 -1.0 polyketide cyclase compare
PS417_11810 -0.7 -1.8 oxidoreductase compare
PS417_02365 -0.7 -2.1 hypothetical protein compare
PS417_01435 -0.7 -1.0 hypothetical protein compare
PS417_14140 -0.7 -1.7 membrane protein compare
PS417_18540 -0.7 -1.7 colicin V production CvpA compare
PS417_11075 -0.7 -2.2 hydroxypyruvate isomerase compare
PS417_12345 -0.7 -2.0 cobalamin biosynthesis protein CobW compare
PS417_05830 -0.7 -1.8 hypothetical protein compare
PS417_19605 -0.7 -1.0 hypothetical protein compare
PS417_09505 -0.7 -1.7 hypothetical protein compare
PS417_22050 -0.7 -2.9 ribonuclease BN compare
PS417_03460 -0.7 -2.6 type III secretion protein HrpI compare
PS417_15860 -0.7 -3.1 chromate transporter compare
PS417_00385 -0.7 -0.8 Fur family transcriptional regulator compare
PS417_19125 -0.7 -2.2 LysR family transcriptional regulator compare
PS417_08580 -0.7 -3.0 histidine kinase compare
PS417_02815 -0.7 -3.0 urea ABC transporter ATP-binding protein compare
PS417_05160 -0.7 -0.9 DNA polymerase III subunit chi compare
PS417_23375 -0.6 -1.4 cytochrome C oxidase compare
PS417_20665 -0.6 -3.2 hypothetical protein compare
PS417_19360 -0.6 -1.7 hypothetical protein compare
PS417_06355 -0.6 -1.7 protein-L-isoaspartate O-methyltransferase compare
PS417_13990 -0.6 -1.6 LysR family transcriptional regulator compare
PS417_19195 -0.6 -1.5 hypothetical protein compare
PS417_22330 -0.6 -1.5 arginine deiminase compare
PS417_07540 -0.6 -2.6 multifunctional fatty acid oxidation complex subunit alpha compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms