Experiment set7IT002 for Pseudomonas simiae WCS417

Compare to:

LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

Genes with specific phenotypes:

  gene name fitness t score description  
PS417_04075 -5.2 -9.6 peptide ABC transporter substrate-binding protein compare
PS417_22740 -4.7 -12.2 imelysin compare
PS417_22735 -4.6 -12.3 thiol oxidoreductase compare
PS417_04060 -4.2 -5.3 dipeptide ABC transporter, permease component (from data) compare
PS417_04070 -4.2 -8.2 porin compare
PS417_04055 -3.8 -6.6 peptide transporter compare
PS417_05210 -3.6 -8.6 copper oxidase compare
PS417_06615 -3.5 -11.1 ABC transporter for branched-chain amino acids, substrate-binding component (from data) compare
PS417_17640 -3.2 -8.6 macrolide ABC transporter ATP-binding protein compare
PS417_20755 -3.1 -5.9 membrane protein compare
PS417_22745 -3.0 -7.3 hypothetical protein compare
PS417_00580 -2.7 -5.4 acyl-CoA dehydrogenase compare
PS417_23830 -2.7 -10.9 hypothetical protein compare
PS417_17550 -2.6 -7.1 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_05590 -2.4 -7.8 iron ABC transporter ATP-binding protein compare
PS417_06605 -2.2 -6.6 leucine/isoleucine/valine transporter permease subunit compare
PS417_04860 -2.0 -8.0 ATPase compare
PS417_08430 -1.9 -6.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_05015 -1.9 -5.7 homogentisate 1,2-dioxygenase compare
PS417_26535 -1.8 -5.6 cytochrome B561 compare
PS417_28035 -1.8 -5.7 transcriptional regulator PhoB compare
PS417_17635 -1.8 -6.0 hemolysin secretion protein D compare
PS417_23250 -1.7 -5.2 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_11715 -1.7 -5.4 chromophore maturation protein PvdO compare
PS417_26020 -1.5 -8.6 transcriptional initiation protein Tat compare
PS417_27260 -1.4 -6.3 iron ABC transporter permease compare
PS417_25400 -1.4 -6.7 bacterioferritin compare
PS417_01705 -1.3 -7.3 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) compare
PS417_27265 -1.1 -5.5 iron ABC transporter substrate-binding protein compare
PS417_08920 +1.0 6.6 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_16830 +1.0 7.1 monovalent cation/H+ antiporter subunit A compare
PS417_25910 +1.0 6.3 amine oxidase compare
PS417_16840 +1.1 5.7 monovalent cation/H+ antiporter subunit D compare
PS417_11730 +1.4 7.5 PvdJ/PvdD/PvdP-like protein compare
PS417_19500 +1.5 7.3 antibiotic synthesis protein MbtH compare
PS417_14390 +1.6 10.3 acyl-homoserine lactone acylase subunit beta compare
PS417_17625 +1.9 11.1 ornithine monooxygenase compare
PS417_25905 +1.9 6.1 AsnC family transcriptional regulator compare
PS417_11710 +2.0 9.0 N(5)-hydroxyornithine transformylase PvdF compare
PS417_11695 +2.1 14.7 peptide synthase compare
PS417_19545 +2.2 18.7 peptide synthase compare
PS417_11690 +2.3 16.6 peptide synthase compare
PS417_19550 +2.5 10.1 thioesterase compare
PS417_12075 +2.6 16.6 DNA-binding protein compare
PS417_21275 +3.0 22.7 GntR family transcriptional regulator compare


Specific phenotypes for supernatant Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms