Experiment set7IT002 for Pseudomonas simiae WCS417

200 most important genes:

gene	name	fitness	t score	description
PS417_00185		-6.0	-4.1	tryptophan synthase subunit beta
PS417_23545		-5.9	-3.5	gamma-glutamyl kinase
PS417_24745		-5.8	-5.6	gamma-glutamyl phosphate reductase
PS417_08125		-5.4	-1.7	prephenate dehydratase
PS417_04075		-5.2	-9.6	peptide ABC transporter substrate-binding protein
PS417_22740		-4.7	-12.2	imelysin
PS417_24155		-4.7	-5.5	ATP-binding protein
PS417_22735		-4.6	-12.3	thiol oxidoreductase
PS417_04270		-4.5	-12.0	ribonuclease G
PS417_20985		-4.5	-5.0	porin
PS417_17645		-4.5	-2.3	RND transporter
PS417_01620		-4.5	-3.9	preprotein translocase subunit SecB
PS417_17240		-4.4	-4.4	trigger factor
PS417_14065		-4.4	-6.5	UTP--glucose-1-phosphate uridylyltransferase
PS417_12855		-4.2	-5.8	3-phosphoshikimate 1-carboxyvinyltransferase
PS417_04060		-4.2	-5.3	dipeptide ABC transporter, permease component (from data)
PS417_00345		-4.2	-4.5	copper-binding protein
PS417_04070		-4.2	-8.2	porin
PS417_07560		-4.1	-2.1	universal stress protein UspA
PS417_02280		-4.0	-2.1	GlcNAc-PI de-N-acetylase
PS417_27795		-3.9	-1.2	orotate phosphoribosyltransferase
PS417_04055		-3.8	-6.6	peptide transporter
PS417_18560		-3.8	-9.1	N-(5'-phosphoribosyl)anthranilate isomerase
PS417_06375		-3.7	-1.1	deoxycytidine triphosphate deaminase
PS417_27195		-3.7	-1.6	N-acetylglutamate synthase
PS417_01605		-3.6	-3.0	phosphoglycerate mutase
PS417_05210		-3.6	-8.6	copper oxidase
PS417_27135		-3.6	-1.1	glutamine synthetase
PS417_06615		-3.5	-11.1	ABC transporter for branched-chain amino acids, substrate-binding component (from data)
PS417_08185		-3.4	-7.9	glycosyl transferase
PS417_23910		-3.4	-6.8	3-methyl-2-oxobutanoate hydroxymethyltransferase
PS417_22195		-3.3	-4.0	peptidase
PS417_11705		-3.2	-11.2	cyclic peptide transporter
PS417_02880		-3.2	-2.3	copper chaperone
PS417_17640		-3.2	-8.6	macrolide ABC transporter ATP-binding protein
PS417_02270		-3.2	-5.3	carbamoyltransferase
PS417_00385		-3.1	-1.6	Fur family transcriptional regulator
PS417_00180		-3.1	-3.5	tryptophan synthase subunit alpha
PS417_25710		-3.1	-1.3	indole-3-glycerol-phosphate synthase
PS417_22520		-3.1	-4.1	histidine kinase
PS417_20755		-3.1	-5.9	membrane protein
PS417_22745		-3.0	-7.3	hypothetical protein
PS417_02175		-3.0	-3.5	transcriptional regulator
PS417_08190		-2.9	-17.5	membrane protein
PS417_19335		-2.8	-3.3	isochorismatase
PS417_02415		-2.8	-5.5	phosphoserine phosphatase
PS417_04080		-2.7	-3.4	peptide ABC transporter substrate-binding protein
PS417_00580		-2.7	-5.4	acyl-CoA dehydrogenase
PS417_25715		-2.7	-5.0	anthranilate phosphoribosyltransferase
PS417_26530		-2.7	-1.6	hypothetical protein
PS417_23830		-2.7	-10.9	hypothetical protein
PS417_01710		-2.6	-7.4	histidine utilization repressor
PS417_23770		-2.6	-2.1	exodeoxyribonuclease V subunit alpha
PS417_07615		-2.6	-7.7	TetR family transcriptional regulator
PS417_07170		-2.6	-7.1	hypothetical protein
PS417_17550		-2.6	-7.1	branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data)
PS417_27870		-2.6	-3.7	ATP-dependent DNA helicase RecG
PS417_08195		-2.5	-12.8	hypothetical protein
PS417_08205		-2.4	-5.7	acetyltransferase
PS417_23775		-2.4	-2.2	exodeoxyribonuclease V subunit beta
PS417_05165		-2.4	-4.2	cytosol aminopeptidase
PS417_08225		-2.4	-6.2	acetolactate synthase
PS417_26985		-2.4	-5.2	phosphoenolpyruvate-protein phosphotransferase
PS417_22450		-2.4	-2.0	ATP-dependent DNA helicase RuvA
PS417_06600		-2.4	-1.4	leucine/isoleucine/valine transporter ATP-binding subunit
PS417_04650		-2.4	-1.9	D-alanine--D-alanine ligase
PS417_05590		-2.4	-7.8	iron ABC transporter ATP-binding protein
PS417_04050		-2.3	-2.4	peptide ABC transporter ATP-binding protein
PS417_26815		-2.3	-3.8	peptidase M16
PS417_19350		-2.3	-5.5	GTP cyclohydrolase
PS417_03260		-2.3	-2.7	5S ribosomal RNA
PS417_27875		-2.3	-8.4	histidine kinase
PS417_06605		-2.2	-6.6	leucine/isoleucine/valine transporter permease subunit
PS417_24705		-2.2	-4.7	D-alanyl-D-alanine carboxypeptidase
PS417_08090		-2.2	-1.1	3-oxoacyl-ACP reductase
PS417_05025		-2.1	-2.4	maleylacetoacetate isomerase
PS417_20160		-2.1	-2.9	cysteine synthase
PS417_20650		-2.1	-10.6	hypothetical protein
PS417_00085		-2.1	-3.2	16S rRNA methyltransferase
PS417_25650		-2.0	-6.4	anhydro-N-acetylmuramic acid kinase
PS417_04860		-2.0	-8.0	ATPase
PS417_08245		-2.0	-1.9	CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase
PS417_16990		-2.0	-5.7	acyl-CoA dehydrogenase
PS417_17565		-2.0	-3.7	branched-chain amino acid aminotransferase
PS417_19675		-2.0	-4.0	chemotaxis protein CheY
PS417_06845		-2.0	-2.2	lipoprotein
PS417_22565		-2.0	-1.5	formyltetrahydrofolate deformylase
PS417_09300		-2.0	-2.8	peptidylprolyl isomerase
PS417_08230		-2.0	-2.5	lipopolysaccharide biosynthesis protein RfbH
PS417_04365		-2.0	-1.3	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
PS417_24710		-1.9	-8.1	lipoprotein
PS417_04180		-1.9	-3.5	GntR family transcriptional regulator
PS417_08430		-1.9	-6.0	phospho-2-dehydro-3-deoxyheptonate aldolase
PS417_08220		-1.9	-1.5	epimerase
PS417_27705		-1.9	-2.0	amino acid dehydrogenase
PS417_01850		-1.9	-2.8	phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data)
PS417_27800		-1.9	-6.8	exodeoxyribonuclease III
PS417_05015		-1.9	-5.7	homogentisate 1,2-dioxygenase
PS417_08540		-1.9	-3.6	RNA helicase
PS417_27140		-1.8	-3.9	Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data)
PS417_26730		-1.8	-1.1	pyrroline-5-carboxylate reductase
PS417_07620		-1.8	-2.7	beta-hexosaminidase
PS417_17215		-1.8	-3.9	peptidylprolyl isomerase
PS417_26535		-1.8	-5.6	cytochrome B561
PS417_28035		-1.8	-5.7	transcriptional regulator PhoB
PS417_05975		-1.8	-0.9	chemotaxis protein CheW
PS417_17635		-1.8	-6.0	hemolysin secretion protein D
PS417_27065		-1.7	-4.9	hypothetical protein
PS417_26990		-1.7	-1.9	RNA pyrophosphohydrolase
PS417_27040		-1.7	-2.3	3-phosphoglycerate dehydrogenase
PS417_20635		-1.7	-1.3	ABC transporter ATP-binding protein
PS417_23250		-1.7	-5.2	S-adenosylmethionine tRNA ribosyltransferase
PS417_04065		-1.7	-4.2	peptide ABC transporter substrate-binding protein
PS417_11715		-1.7	-5.4	chromophore maturation protein PvdO
PS417_11810		-1.7	-3.4	oxidoreductase
PS417_12695		-1.7	-6.1	mannitol dehydrogenase
PS417_05610		-1.6	-3.6	bacterioferritin
PS417_08200		-1.6	-2.1	hypothetical protein
PS417_00550		-1.6	-1.4	hypothetical protein
PS417_25725		-1.6	-4.8	anthranilate synthase component I
PS417_19955		-1.6	-1.9	hypothetical protein
PS417_06365		-1.5	-6.6	RNA polymerase sigma factor
PS417_04380		-1.5	-1.0	ABC transporter permease
PS417_26020		-1.5	-8.6	transcriptional initiation protein Tat
PS417_09235		-1.5	-1.4	molecular chaperone
PS417_23725		-1.5	-2.8	methylmalonate-semialdehyde dehydrogenase
PS417_26310		-1.5	-4.6	serine dehydratase
PS417_22445		-1.5	-3.4	ATP-dependent DNA helicase RuvB
PS417_21625		-1.5	-1.4	DNA-binding protein
PS417_25790		-1.5	-5.5	aminoglycoside phosphotransferase
PS417_20665		-1.5	-7.2	hypothetical protein
PS417_19555		-1.5	-4.2	RNA polymerase sigma70
PS417_20660		-1.5	-8.2	hypothetical protein
PS417_22825		-1.4	-4.8	hypothetical protein
PS417_17545		-1.4	-2.5	2-oxoisovalerate dehydrogenase
PS417_20855		-1.4	-1.1	hypothetical protein
PS417_27520		-1.4	-3.2	uroporphyrin-III methyltransferase
PS417_18310		-1.4	-1.9	hypothetical protein
PS417_03300		-1.4	-3.2	alanine acetyltransferase
PS417_00195		-1.4	-2.7	hypothetical protein
PS417_02255		-1.4	-2.2	lipopolysaccharide kinase
PS417_05695		-1.4	-4.6	transcriptional regulator
PS417_16465		-1.4	-8.0	sirohydrochlorin ferrochelatase
PS417_21210		-1.4	-1.2	amidotransferase
PS417_27260		-1.4	-6.3	iron ABC transporter permease
PS417_19755		-1.4	-1.7	flagellar motor switch protein FliM
PS417_12375		-1.4	-2.6	serine/threonine protein phosphatase
PS417_25400		-1.4	-6.7	bacterioferritin
PS417_25390		-1.3	-3.4	MFS transporter
PS417_23995		-1.3	-0.9	preprotein translocase subunit SecG
PS417_20080		-1.3	-2.6	peptidase P60
PS417_21830		-1.3	-3.2	TetR family transcriptional regulator
PS417_28040		-1.3	-2.3	histidine kinase
PS417_06835		-1.3	-2.0	phospholipase
PS417_27835		-1.3	-4.5	endoribonuclease
PS417_08155		-1.3	-1.9	integration host factor subunit beta
PS417_03560		-1.3	-1.5	GTP-binding protein
PS417_23890		-1.3	-3.8	ATPase
PS417_01705		-1.3	-7.3	Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data)
PS417_12200		-1.3	-4.5	microcin ABC transporter permease
PS417_08135		-1.3	-5.4	3-phosphoshikimate 1-carboxyvinyltransferase
PS417_04385		-1.3	-5.4	organic solvent ABC transporter substrate-binding protein
PS417_20670		-1.3	-4.5	glycosyl transferase family 2
PS417_12290		-1.3	-6.0	sulfite reductase
PS417_04390		-1.2	-6.0	toluene tolerance protein
PS417_27295		-1.2	-4.7	hypothetical protein
PS417_12840		-1.2	-4.2	TetR family transcriptional regulator
PS417_05535		-1.2	-1.4	Fis family transcriptional regulator
PS417_13855		-1.2	-1.4	acetyl-CoA acetyltransferase
PS417_10520		-1.2	-3.6	succinyl-CoA:3-ketoacid-CoA transferase
PS417_16490		-1.2	-1.2	cell division protein FtsK
PS417_13305		-1.2	-1.5	hypothetical protein
PS417_12195		-1.2	-3.2	ABC transporter permease
PS417_03875		-1.2	-2.5	membrane protein
PS417_22815		-1.2	-6.3	permease
PS417_21680		-1.2	-2.1	succinylglutamate desuccinylase
PS417_21695		-1.2	-3.0	succinylglutamate-semialdehyde dehydrogenase
PS417_09210		-1.2	-1.5	TetR family transcriptional regulator
PS417_01795		-1.2	-7.0	glucosyltransferase MdoH
PS417_12205		-1.2	-5.7	hypothetical protein
PS417_01915		-1.2	-0.9	ATP-dependent protease ATP-binding subunit HslU
PS417_17630		-1.1	-2.3	RNA polymerase sigma factor
PS417_06500		-1.1	-1.4	hypothetical protein
PS417_03970		-1.1	-1.5	1-phosphofructokinase
PS417_21630		-1.1	-2.0	magnesium transporter
PS417_07710		-1.1	-5.5	membrane protein
PS417_06530		-1.1	-1.8	membrane protein
PS417_19705		-1.1	-1.8	flagellar biosynthesis regulator FlhF
PS417_17610		-1.1	-2.0	AsnC family transcriptional regulator
PS417_23105		-1.1	-1.3	hypothetical protein
PS417_19425		-1.1	-0.8	allantoicase
PS417_20610		-1.1	-1.4	hypothetical protein
PS417_21510		-1.1	-1.7	histidine kinase
PS417_19275		-1.1	-1.3	hypothetical protein
PS417_00405		-1.1	-5.6	DNA polymerase I
PS417_01790		-1.1	-4.2	glucan biosynthesis protein G
PS417_16370		-1.1	-5.5	chemotaxis protein CheY
PS417_28220		-1.1	-2.1	LysR family transcriptional regulator
PS417_08410		-1.1	-2.1	hypothetical protein
PS417_27265		-1.1	-5.5	iron ABC transporter substrate-binding protein

Specific Phenotypes

For 45 genes in this experiment

For supernatant Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms