Experiment set7IT001 for Pseudomonas simiae WCS417

Compare to:

LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x

Genes with specific phenotypes:

  gene name fitness t score description  
PS417_04075 -3.7 -9.4 peptide ABC transporter substrate-binding protein compare
PS417_19555 -3.6 -6.0 RNA polymerase sigma70 compare
PS417_04055 -3.5 -6.7 peptide transporter compare
PS417_05590 -3.5 -7.9 iron ABC transporter ATP-binding protein compare
PS417_17640 -3.4 -7.9 macrolide ABC transporter ATP-binding protein compare
PS417_22740 -3.3 -11.8 imelysin compare
PS417_17635 -3.0 -8.5 hemolysin secretion protein D compare
PS417_22735 -2.9 -10.6 thiol oxidoreductase compare
PS417_04070 -2.9 -7.5 porin compare
PS417_21680 -2.5 -5.3 succinylglutamate desuccinylase compare
PS417_27260 -2.4 -9.6 iron ABC transporter permease compare
PS417_27265 -2.3 -8.4 iron ABC transporter substrate-binding protein compare
PS417_11700 -2.3 -11.5 ligand-gated channel compare
PS417_17550 -2.2 -7.2 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_06615 -2.1 -7.0 ABC transporter for branched-chain amino acids, substrate-binding component (from data) compare
PS417_05210 -2.1 -7.5 copper oxidase compare
PS417_26020 -2.1 -10.5 transcriptional initiation protein Tat compare
PS417_23830 -1.9 -9.9 hypothetical protein compare
PS417_28040 -1.9 -5.5 histidine kinase compare
PS417_14005 -1.8 -7.8 4-hydroxyphenylpyruvate dioxygenase compare
PS417_22825 -1.5 -7.3 hypothetical protein compare
PS417_04860 -1.5 -5.5 ATPase compare
PS417_01705 -1.2 -6.1 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) compare
PS417_11730 +1.1 6.7 PvdJ/PvdD/PvdP-like protein compare
PS417_14390 +1.2 8.1 acyl-homoserine lactone acylase subunit beta compare
PS417_24680 +1.3 8.7 murein transglycosylase compare
PS417_11695 +1.4 10.0 peptide synthase compare
PS417_17625 +1.4 8.9 ornithine monooxygenase compare
PS417_11690 +1.4 9.9 peptide synthase compare
PS417_11710 +1.5 5.4 N(5)-hydroxyornithine transformylase PvdF compare
PS417_19545 +1.5 13.8 peptide synthase compare
PS417_18715 +1.8 10.1 peptidase M4 compare
PS417_19550 +1.8 7.2 thioesterase compare
PS417_21275 +3.0 22.5 GntR family transcriptional regulator compare


Specific phenotypes for supernatant Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms