Experiment set7IT001 for Pseudomonas simiae WCS417

200 most important genes:

gene	name	fitness	t score	description
PS417_24745		-5.6	-5.4	gamma-glutamyl phosphate reductase
PS417_08125		-5.3	-1.9	prephenate dehydratase
PS417_24155		-4.6	-7.0	ATP-binding protein
PS417_27705		-4.5	-2.3	amino acid dehydrogenase
PS417_00185		-4.5	-5.3	tryptophan synthase subunit beta
PS417_01605		-4.4	-3.0	phosphoglycerate mutase
PS417_02280		-4.4	-3.6	GlcNAc-PI de-N-acetylase
PS417_03560		-4.4	-4.2	GTP-binding protein
PS417_20985		-4.3	-6.5	porin
PS417_12855		-4.3	-4.2	3-phosphoshikimate 1-carboxyvinyltransferase
PS417_23545		-4.2	-4.3	gamma-glutamyl kinase
PS417_16990		-4.1	-8.6	acyl-CoA dehydrogenase
PS417_27795		-3.8	-1.4	orotate phosphoribosyltransferase
PS417_08540		-3.8	-4.3	RNA helicase
PS417_04075		-3.7	-9.4	peptide ABC transporter substrate-binding protein
PS417_19555		-3.6	-6.0	RNA polymerase sigma70
PS417_06375		-3.6	-1.3	deoxycytidine triphosphate deaminase
PS417_04055		-3.5	-6.7	peptide transporter
PS417_05590		-3.5	-7.9	iron ABC transporter ATP-binding protein
PS417_17640		-3.4	-7.9	macrolide ABC transporter ATP-binding protein
PS417_00180		-3.4	-3.8	tryptophan synthase subunit alpha
PS417_04060		-3.3	-4.8	dipeptide ABC transporter, permease component (from data)
PS417_22740		-3.3	-11.8	imelysin
PS417_07560		-3.2	-2.8	universal stress protein UspA
PS417_26985		-3.1	-5.2	phosphoenolpyruvate-protein phosphotransferase
PS417_17635		-3.0	-8.5	hemolysin secretion protein D
PS417_02415		-3.0	-6.2	phosphoserine phosphatase
PS417_22735		-2.9	-10.6	thiol oxidoreductase
PS417_27875		-2.9	-9.4	histidine kinase
PS417_04070		-2.9	-7.5	porin
PS417_22195		-2.8	-6.9	peptidase
PS417_14065		-2.8	-12.8	UTP--glucose-1-phosphate uridylyltransferase
PS417_22520		-2.8	-3.3	histidine kinase
PS417_00580		-2.7	-4.3	acyl-CoA dehydrogenase
PS417_07170		-2.6	-4.8	hypothetical protein
PS417_18560		-2.6	-12.6	N-(5'-phosphoribosyl)anthranilate isomerase
PS417_05025		-2.5	-2.8	maleylacetoacetate isomerase
PS417_06600		-2.5	-1.5	leucine/isoleucine/valine transporter ATP-binding subunit
PS417_24705		-2.5	-4.6	D-alanyl-D-alanine carboxypeptidase
PS417_21680		-2.5	-5.3	succinylglutamate desuccinylase
PS417_22745		-2.5	-4.8	hypothetical protein
PS417_19705		-2.5	-3.7	flagellar biosynthesis regulator FlhF
PS417_24710		-2.4	-6.4	lipoprotein
PS417_23910		-2.4	-6.7	3-methyl-2-oxobutanoate hydroxymethyltransferase
PS417_20160		-2.4	-3.2	cysteine synthase
PS417_27260		-2.4	-9.6	iron ABC transporter permease
PS417_04650		-2.4	-1.9	D-alanine--D-alanine ligase
PS417_27490		-2.4	-3.4	hypothetical protein
PS417_26730		-2.4	-1.2	pyrroline-5-carboxylate reductase
PS417_08230		-2.4	-3.6	lipopolysaccharide biosynthesis protein RfbH
PS417_17545		-2.3	-2.6	2-oxoisovalerate dehydrogenase
PS417_25710		-2.3	-1.6	indole-3-glycerol-phosphate synthase
PS417_27195		-2.3	-1.8	N-acetylglutamate synthase
PS417_17645		-2.3	-2.2	RND transporter
PS417_27265		-2.3	-8.4	iron ABC transporter substrate-binding protein
PS417_11700		-2.3	-11.5	ligand-gated channel
PS417_04180		-2.2	-3.0	GntR family transcriptional regulator
PS417_00345		-2.2	-3.5	copper-binding protein
PS417_27435		-2.2	-5.2	polyphosphate kinase
PS417_19350		-2.2	-5.8	GTP cyclohydrolase
PS417_17550		-2.2	-7.2	branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data)
PS417_06615		-2.1	-7.0	ABC transporter for branched-chain amino acids, substrate-binding component (from data)
PS417_05210		-2.1	-7.5	copper oxidase
PS417_28035		-2.1	-4.8	transcriptional regulator PhoB
PS417_26020		-2.1	-10.5	transcriptional initiation protein Tat
PS417_05015		-2.1	-4.3	homogentisate 1,2-dioxygenase
PS417_08410		-2.1	-2.3	hypothetical protein
PS417_21210		-2.1	-2.5	amidotransferase
PS417_04270		-2.0	-8.2	ribonuclease G
PS417_11705		-2.0	-8.0	cyclic peptide transporter
PS417_03300		-2.0	-4.6	alanine acetyltransferase
PS417_26535		-2.0	-4.3	cytochrome B561
PS417_00385		-2.0	-1.5	Fur family transcriptional regulator
PS417_08185		-2.0	-5.8	glycosyl transferase
PS417_02880		-2.0	-3.0	copper chaperone
PS417_17565		-2.0	-2.7	branched-chain amino acid aminotransferase
PS417_23830		-1.9	-9.9	hypothetical protein
PS417_01850		-1.9	-2.8	phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data)
PS417_28040		-1.9	-5.5	histidine kinase
PS417_19335		-1.9	-2.1	isochorismatase
PS417_08190		-1.9	-12.3	membrane protein
PS417_04080		-1.9	-2.4	peptide ABC transporter substrate-binding protein
PS417_22450		-1.9	-2.5	ATP-dependent DNA helicase RuvA
PS417_27870		-1.8	-4.3	ATP-dependent DNA helicase RecG
PS417_02175		-1.8	-4.6	transcriptional regulator
PS417_14005		-1.8	-7.8	4-hydroxyphenylpyruvate dioxygenase
PS417_07470		-1.8	-2.1	hypothetical protein
PS417_05165		-1.8	-3.0	cytosol aminopeptidase
PS417_24615		-1.8	-0.9	hypothetical protein
PS417_25650		-1.8	-5.0	anhydro-N-acetylmuramic acid kinase
PS417_21065		-1.8	-2.7	3-methylitaconate isomerase
PS417_23770		-1.8	-2.4	exodeoxyribonuclease V subunit alpha
PS417_01710		-1.7	-4.5	histidine utilization repressor
PS417_17240		-1.7	-3.2	trigger factor
PS417_05595		-1.7	-5.5	ornithine carbamoyltransferase
PS417_10520		-1.7	-3.7	succinyl-CoA:3-ketoacid-CoA transferase
PS417_17610		-1.7	-2.4	AsnC family transcriptional regulator
PS417_19160		-1.7	-4.9	hypothetical protein
PS417_02225		-1.6	-2.1	bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase
PS417_18055		-1.6	-1.4	general secretion pathway protein GspK
PS417_23725		-1.6	-3.8	methylmalonate-semialdehyde dehydrogenase
PS417_07615		-1.6	-5.5	TetR family transcriptional regulator
PS417_21695		-1.6	-3.8	succinylglutamate-semialdehyde dehydrogenase
PS417_05160		-1.6	-1.5	DNA polymerase III subunit chi
PS417_11175		-1.5	-2.4	AraC family transcriptional regulator
PS417_22825		-1.5	-7.3	hypothetical protein
PS417_04050		-1.5	-1.5	peptide ABC transporter ATP-binding protein
PS417_06895		-1.5	-4.6	DNA-binding protein
PS417_12695		-1.5	-4.2	mannitol dehydrogenase
PS417_06645		-1.5	-7.4	RNA polymerase-associated protein RapA
PS417_04860		-1.5	-5.5	ATPase
PS417_22990		-1.5	-1.8	iron dicitrate transport regulator FecR
PS417_18310		-1.5	-1.6	hypothetical protein
PS417_08245		-1.4	-1.7	CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase
PS417_26900		-1.4	-1.6	L-cystine transporter tcyP
PS417_12200		-1.4	-4.4	microcin ABC transporter permease
PS417_16555		-1.4	-1.9	cupin
PS417_06365		-1.4	-6.1	RNA polymerase sigma factor
PS417_20635		-1.4	-1.2	ABC transporter ATP-binding protein
PS417_09235		-1.4	-1.5	molecular chaperone
PS417_02270		-1.4	-3.7	carbamoyltransferase
PS417_04375		-1.3	-2.5	ABC transporter ATP-binding protein
PS417_19675		-1.3	-4.3	chemotaxis protein CheY
PS417_01030		-1.3	-1.5	glutamine ABC transporter substrate-binding protein
PS417_04065		-1.3	-3.1	peptide ABC transporter substrate-binding protein
PS417_23995		-1.3	-1.0	preprotein translocase subunit SecG
PS417_08135		-1.3	-4.1	3-phosphoshikimate 1-carboxyvinyltransferase
PS417_06530		-1.3	-3.0	membrane protein
PS417_12840		-1.3	-4.0	TetR family transcriptional regulator
PS417_21070		-1.3	-1.5	aconitate hydratase
PS417_00975		-1.3	-1.6	hypothetical protein
PS417_25790		-1.3	-3.9	aminoglycoside phosphotransferase
PS417_06165		-1.3	-2.7	thiamine biosynthesis protein ThiF
PS417_22565		-1.3	-1.3	formyltetrahydrofolate deformylase
PS417_26530		-1.3	-1.2	hypothetical protein
PS417_21430		-1.2	-2.6	3-oxoacyl-ACP synthase
PS417_25715		-1.2	-3.0	anthranilate phosphoribosyltransferase
PS417_04380		-1.2	-1.8	ABC transporter permease
PS417_12750		-1.2	-4.7	acriflavine resistance protein B
PS417_19605		-1.2	-1.5	hypothetical protein
PS417_16195		-1.2	-1.2	AraC family transcriptional regulator
PS417_17215		-1.2	-2.8	peptidylprolyl isomerase
PS417_07875		-1.2	-1.0	hypothetical protein
PS417_04365		-1.2	-1.2	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
PS417_11720		-1.2	-2.4	class V aminotransferase
PS417_07640		-1.2	-2.6	glyceraldehyde-3-phosphate dehydrogenase
PS417_06175		-1.2	-3.0	cysteine sulfinate desulfinase
PS417_05695		-1.2	-3.6	transcriptional regulator
PS417_01995		-1.2	-2.1	hypothetical protein
PS417_06605		-1.2	-4.8	leucine/isoleucine/valine transporter permease subunit
PS417_15770		-1.2	-1.2	pyridoxine 5'-phosphate oxidase
PS417_27245		-1.2	-3.1	aminotransferase DegT
PS417_01705		-1.2	-6.1	Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data)
PS417_07165		-1.2	-2.2	dihydrodipicolinate synthase
PS417_26725		-1.2	-2.4	hypothetical protein
PS417_09300		-1.2	-2.5	peptidylprolyl isomerase
PS417_11715		-1.2	-3.7	chromophore maturation protein PvdO
PS417_04385		-1.1	-4.0	organic solvent ABC transporter substrate-binding protein
PS417_09325		-1.1	-2.1	peptidase S41
PS417_22570		-1.1	-0.9	H-NS histone
PS417_26175		-1.1	-0.9	sarcosine oxidase subunit gamma
PS417_23835		-1.1	-3.8	hypothetical protein
PS417_22445		-1.1	-3.6	ATP-dependent DNA helicase RuvB
PS417_12205		-1.1	-3.9	hypothetical protein
PS417_06780		-1.1	-2.5	TetR family transcriptional regulator
PS417_27800		-1.1	-3.1	exodeoxyribonuclease III
PS417_01620		-1.1	-3.0	preprotein translocase subunit SecB
PS417_23150		-1.1	-2.3	Cro/Cl family transcriptional regulator
PS417_09085		-1.1	-1.1	hypothetical protein
PS417_20855		-1.1	-1.4	hypothetical protein
PS417_00825		-1.1	-2.8	recombinase RecF
PS417_04585		-1.1	-1.5	hypothetical protein
PS417_25725		-1.1	-4.1	anthranilate synthase component I
PS417_25915		-1.0	-2.4	carbon-nitrogen hydrolase
PS417_20720		-1.0	-2.0	cbb3-type cytochrome c oxidase subunit I
PS417_21630		-1.0	-2.2	magnesium transporter
PS417_01915		-1.0	-0.9	ATP-dependent protease ATP-binding subunit HslU
PS417_28050		-1.0	-2.9	hypothetical protein
PS417_07620		-1.0	-2.1	beta-hexosaminidase
PS417_05825		-1.0	-4.0	cytochrome D ubiquinol oxidase subunit II
PS417_00510		-1.0	-0.8	membrane protein
PS417_03815		-1.0	-2.5	DNA transporter
PS417_26555		-1.0	-3.7	endoribonuclease L-PSP
PS417_27140		-1.0	-1.8	Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data)
PS417_06200		-1.0	-2.8	protein-PII uridylyltransferase
PS417_08225		-1.0	-3.7	acetolactate synthase
PS417_04875		-1.0	-1.5	molybdenum cofactor biosynthesis protein MoaE
PS417_20080		-1.0	-2.6	peptidase P60
PS417_18760		-1.0	-3.4	hypothetical protein
PS417_24230		-1.0	-5.1	ATP-dependent protease
PS417_08430		-1.0	-3.4	phospho-2-dehydro-3-deoxyheptonate aldolase
PS417_27300		-1.0	-0.9	cell division protein ZapA
PS417_26280		-1.0	-2.0	NADPH:quinone reductase
PS417_12595		-1.0	-1.7	transcriptional regulator
PS417_27585		-0.9	-2.5	diaminopimelate epimerase
PS417_23250		-0.9	-3.6	S-adenosylmethionine tRNA ribosyltransferase
PS417_11400		-0.9	-1.3	phosphoglycerate mutase
PS417_28315		-0.9	-1.8	zinc ABC transporter permease
PS417_02865		-0.9	-2.7	peptidase
PS417_26190		-0.9	-3.7	sarcosine oxidase subunit beta

Specific Phenotypes

For 34 genes in this experiment

For supernatant Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms