Experiment set78S306 for Escherichia coli BW25113
PoolT9D18
Group: phageMedia: LB_plus_SM_buffer + double orbital, continuous, 205cpm (10 MOI)
Culturing: Keio_ML9a, 48 well microplate, Liquid, at 37 (C), shaken=Aerobic, (Phage)
By: Sarshad on 10/6/2025
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride, 100 mM Sodium Chloride, 4 mM Magnesium sulfate, 0.005 vol% Gelatin, 25 mM Tris hydrochloride
Specific Phenotypes
For 4 genes in this experiment
For phage double orbital, continuous, 205cpm in Escherichia coli BW25113
For phage double orbital, continuous, 205cpm across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Maltose and Maltodextrin Utilization | 2 |
| D-Tagatose and Galactitol Utilization | 1 |
| Trehalose Uptake and Utilization | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glycolysis / Gluconeogenesis
- Fructose and mannose metabolism
- Galactose metabolism
- Ascorbate and aldarate metabolism
- Starch and sucrose metabolism
- Nucleotide sugars metabolism
- Aminosugars metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| galactitol degradation | 5 | 5 | 1 |
| superpathway of hexitol degradation (bacteria) | 18 | 18 | 1 |