| | gene | name | fitness | t score | description | |
|---|
| b3341 | rpsG | +2.0 | 3.2 | 30S ribosomal protein S7 (NCBI) | compare |
| b4402 | yjjY | +1.9 | 1.4 | hypothetical protein (NCBI) | compare |
| b2741 | rpoS | +1.6 | 7.9 | RNA polymerase sigma factor (NCBI) | compare |
| b0014 | dnaK | +1.5 | 2.6 | molecular chaperone DnaK (NCBI) | compare |
| b1642 | slyA | +1.3 | 2.4 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b4443 | gcvB | +1.2 | 0.7 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b4701 | sokX | +1.2 | 1.9 | sok-related sRNA, function unknown (RefSeq) | compare |
| b1823 | cspC | +1.2 | 3.4 | stress protein, member of the CspA-family (NCBI) | compare |
| b0232 | yafN | +1.1 | 1.4 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b4066 | yjcF | +1.1 | 1.0 | hypothetical protein (NCBI) | compare |
| b1217 | chaB | +1.0 | 2.2 | cation transport regulator (NCBI) | compare |
| b3027 | ygiZ | +1.0 | 1.0 | conserved inner membrane protein (NCBI) | compare |
| b1563 | relE | +1.0 | 1.8 | Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI) | compare |
| b1160 | elbA | +0.9 | 1.4 | hypothetical protein (NCBI) | compare |
| b1824 | yobF | +0.9 | 2.5 | hypothetical protein (NCBI) | compare |
| b3649 | rpoZ | +0.9 | 2.9 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b1882 | cheY | +0.9 | 0.9 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b0240 | crl | +0.9 | 5.7 | DNA-binding transcriptional regulator (NCBI) | compare |
| b1542 | ydfI | +0.9 | 2.3 | predicted mannonate dehydrogenase (NCBI) | compare |
| b2498 | upp | +0.8 | 1.7 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b2262 | menB | +0.8 | 1.5 | naphthoate synthase (NCBI) | compare |
| b0407 | yajC | +0.8 | 3.1 | preprotein translocase subunit YajC (NCBI) | compare |
| b4217 | ytfK | +0.8 | 4.1 | orf, hypothetical protein (VIMSS) | compare |
| b3753 | rbsR | +0.8 | 6.4 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b1954 | dsrA | +0.8 | 2.4 | regulatory antisense RNA (NCBI) | compare |
| b4585 | sroB | +0.8 | 1.4 | Novel sRNA, function unknown (RefSeq) | compare |
| b4458 | oxyS | +0.7 | 1.4 | global regulatory RNA (NCBI) | compare |
| b0782 | moaB | +0.7 | 2.4 | molybdopterin biosynthesis protein B (NCBI) | compare |
| b4451 | ryhB | +0.7 | 1.6 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b2217 | rcsB | +0.7 | 4.8 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b2990 | hybG | +0.7 | 1.6 | hydrogenase 2 accessory protein (NCBI) | compare |
| b0212 | gloB | +0.7 | 2.1 | predicted hydroxyacylglutathione hydrolase (NCBI) | compare |
| b0015 | dnaJ | +0.7 | 4.6 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b1818 | manY | +0.7 | 1.4 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b1847 | yebF | +0.7 | 1.7 | predicted protein (RefSeq) | compare |
| b1984 | asnW | +0.7 | 1.0 | tRNA-Asn (NCBI) | compare |
| b1792 | yeaO | +0.7 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b3206 | npr | +0.7 | 3.5 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b3512 | GadE | +0.7 | 3.0 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b2698 | recX | +0.7 | 2.4 | RecA regulator RecX (NCBI) | compare |
| b4025 | pgi | +0.6 | 4.4 | glucose-6-phosphate isomerase (NCBI) | compare |
| b4071 | nrfB | +0.6 | 2.3 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b0866 | ybjQ | +0.6 | 1.2 | hypothetical protein (NCBI) | compare |
| b3228 | sspB | +0.6 | 2.2 | ClpXP protease specificity-enhancing factor (NCBI) | compare |
| b0389 | yaiA | +0.6 | 1.9 | hypothetical protein (NCBI) | compare |
| b1426 | ydcH | +0.6 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b3429 | glgA | +0.6 | 5.0 | glycogen synthase (NCBI) | compare |
| b4201 | priB | +0.6 | 1.5 | primosomal replication protein N (NCBI) | compare |
| b0487 | cueR | +0.6 | 2.8 | DNA-binding transcriptional activator of copper-responsive regulon genes (NCBI) | compare |
| b2145 | yeiS | +0.6 | 3.0 | predicted inner membrane protein (NCBI) | compare |
| b2762 | cysH | +0.6 | 3.9 | phosphoadenosine phosphosulfate reductase (NCBI) | compare |
| b1667 | ydhR | +0.6 | 1.1 | hypothetical protein (NCBI) | compare |
| b1286 | rnb | +0.6 | 1.5 | exoribonuclease II (NCBI) | compare |
| b4097 | phnK | +0.6 | 2.7 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b4041 | plsB | +0.6 | 1.3 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b2221 | atoD | +0.6 | 2.8 | acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (NCBI) | compare |
| b2181 | yejG | +0.6 | 2.7 | hypothetical protein (NCBI) | compare |
| b1108 | ycfP | +0.6 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b2659 | b2659 | +0.6 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1839 | yebY | +0.6 | 1.7 | hypothetical protein (NCBI) | compare |
| b3432 | glgB | +0.6 | 4.9 | glycogen branching enzyme (NCBI) | compare |
| b3348 | slyX | +0.6 | 2.5 | hypothetical protein (NCBI) | compare |
| b1304 | pspA | +0.6 | 1.5 | regulatory protein for phage-shock-protein operon (NCBI) | compare |
| b2346 | vacJ | +0.6 | 4.2 | predicted lipoprotein (NCBI) | compare |
| b1842 | holE | +0.6 | 1.0 | DNA polymerase III, theta subunit (NCBI) | compare |
| b1790 | yeaM | +0.6 | 3.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2642 | yfjW | +0.6 | 0.4 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b3650 | spoT | +0.6 | 3.3 | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (NCBI) | compare |
| b0624 | crcB | +0.6 | 2.1 | camphor resistance protein CrcB (NCBI) | compare |
| b4096 | phnL | +0.6 | 2.4 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b2742 | nlpD | +0.6 | 3.2 | predicted outer membrane lipoprotein (NCBI) | compare |
| b3074 | ygjH | +0.6 | 2.2 | hypothetical protein (NCBI) | compare |
| b0990 | cspG | +0.6 | 0.5 | DNA-binding transcriptional regulator (NCBI) | compare |
| b2510 | b2510 | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1104 | ycfL | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b3195 | yrbF | +0.5 | 4.2 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b2432 | yfeY | +0.5 | 1.2 | hypothetical protein (NCBI) | compare |
| b2954 | yggV | +0.5 | 1.8 | putative deoxyribonucleotide triphosphate pyrophosphatase (NCBI) | compare |
| b0836 | yliH | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b1085 | b1085 | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b3752 | rbsK | +0.5 | 4.0 | ribokinase (NCBI) | compare |
| b0623 | cspE | +0.5 | 0.9 | cold shock protein E (NCBI) | compare |
| b3193 | yrbD | +0.5 | 3.6 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b3194 | yrbE | +0.5 | 3.6 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b2579 | yfiD | +0.5 | 1.7 | pyruvate formate lyase subunit (NCBI) | compare |
| b3149 | yraO | +0.5 | 2.4 | DnaA initiator-associating factor for replication initiation (NCBI) | compare |
| b0912 | ihfB | +0.5 | 1.8 | integration host factor subunit beta (NCBI) | compare |
| b4431 | rprA | +0.5 | 1.5 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b4048 | yjbM | +0.5 | 0.9 | hypothetical protein (NCBI) | compare |
| b2419 | yfeK | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b0778 | bioD | +0.5 | 2.0 | dethiobiotin synthetase (NCBI) | compare |
| b0388 | aroL | +0.5 | 1.5 | shikimate kinase II (NCBI) | compare |
| b0364 | yaiS | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b4578 | insP | +0.5 | 1.7 | no description | compare |
| b2421 | cysM | +0.5 | 2.3 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b1804 | rnd | +0.5 | 2.1 | ribonuclease D (NCBI) | compare |
| b4695 | ykgT | +0.5 | 0.6 | no description | compare |
| b2071 | yegJ | +0.5 | 1.3 | hypothetical protein (NCBI) | compare |
| b3034 | nudF | +0.5 | 2.3 | ADP-ribose pyrophosphatase (NCBI) | compare |
| b4151 | frdD | +0.5 | 2.2 | fumarate reductase subunit D (NCBI) | compare |
| b0410 | yajD | +0.5 | 1.8 | hypothetical protein (NCBI) | compare |
| b3192 | yrbC | +0.5 | 3.4 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b4294 | insA-7 | +0.5 | 0.9 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b1285 | gmr | +0.5 | 2.5 | modulator of Rnase II stability (NCBI) | compare |
| b2831 | mutH | +0.5 | 2.0 | DNA mismatch repair protein (NCBI) | compare |
| b4508 | peaD | +0.5 | 2.1 | putative sensory transduction regulator (VIMSS) | compare |
| b1604 | ydgH | +0.5 | 1.2 | hypothetical protein (NCBI) | compare |
| b4053 | alr | +0.5 | 3.4 | alanine racemase (NCBI) | compare |
| b0998 | torD | +0.5 | 0.8 | chaperone protein TorD (NCBI) | compare |
| b3238 | yhcN | +0.5 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2911 | ssrS | +0.5 | 1.0 | 6S regulatory RNA (NCBI) | compare |
| b1682 | sufC | +0.5 | 2.7 | cysteine desulfurase ATPase component (NCBI) | compare |
| b1831 | proQ | +0.5 | 1.8 | putative solute/DNA competence effector (NCBI) | compare |
| b1312 | ycjP | +0.5 | 3.3 | predicted sugar transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b4522 | yciX_1 | +0.5 | 1.1 | hypothetical protein (NCBI) | compare |
| b0412 | yajI | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1088 | yceD | +0.5 | 1.7 | hypothetical protein (NCBI) | compare |
| b4406 | yaeP | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b1423 | ydcJ | +0.5 | 1.8 | hypothetical protein (NCBI) | compare |
| b2189 | proL | +0.5 | 1.1 | tRNA-Pro (NCBI) | compare |
| b0450 | glnK | +0.5 | 1.6 | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB (NCBI) | compare |
| b1249 | cls | +0.5 | 2.8 | cardiolipin synthetase (NCBI) | compare |
| b3443 | yrhA | +0.5 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b4178 | yjeB | +0.5 | 2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3935 | priA | +0.5 | 1.0 | primosome assembly protein PriA (NCBI) | compare |
| b1422 | ydcI | +0.5 | 2.9 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b3354 | yheU | +0.5 | 2.9 | hypothetical protein (NCBI) | compare |
| b2284 | nuoF | +0.5 | 2.0 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b3469 | zntA | +0.5 | 2.7 | zinc, cobalt and lead efflux system (NCBI) | compare |
| b3555 | yiaG | +0.5 | 1.2 | predicted transcriptional regulator (NCBI) | compare |
| b2535 | csiE | +0.5 | 3.4 | orf, hypothetical protein (VIMSS) | compare |
| b1290 | sapF | +0.5 | 0.6 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b3133 | agaV | +0.4 | 2.6 | PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) (VIMSS) | compare |
| b2101 | yegW | +0.4 | 2.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0108 | ppdD | +0.4 | 1.8 | predicted major pilin subunit (NCBI) | compare |
| b2366 | dsdA | +0.4 | 1.9 | D-serine dehydratase (NCBI) | compare |
| b4445 | omrB | +0.4 | 2.1 | sRNA down regulates OM proteins; positively regulated by OmpR/EnvZ; binds Hfq (RefSeq) | compare |
| b1492 | gadC | +0.4 | 2.9 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b1769 | ydjE | +0.4 | 2.4 | predicted transporter (NCBI) | compare |
| b4568 | ytjA | +0.4 | 1.1 | predicted protein (RefSeq) | compare |
| b4214 | cysQ | +0.4 | 3.3 | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase (NCBI) | compare |
| b3131 | agaR | +0.4 | 1.7 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1650 | nemA | +0.4 | 2.4 | N-ethylmaleimide reductase, FMN-linked (NCBI) | compare |
| b2439 | eutL | +0.4 | 2.1 | predicted carboxysome structural protein with predicted role in ethanolamine utilization (NCBI) | compare |
| b0710 | ybgI | +0.4 | 2.5 | conserved metal-binding protein (NCBI) | compare |
| b0503 | ybbB | +0.4 | 1.4 | tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI) | compare |
| b1778 | yeaA | +0.4 | 0.8 | methionine sulfoxide reductase B (NCBI) | compare |
| b1110 | ycfJ | +0.4 | 2.6 | hypothetical protein (NCBI) | compare |
| b2356 | yfdM | +0.4 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2272 | yfbM | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b1960 | vsr | +0.4 | 1.2 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b1177 | ycgJ | +0.4 | 2.3 | hypothetical protein (NCBI) | compare |
| b0870 | ltaE | +0.4 | 2.6 | L-allo-threonine aldolase, PLP-dependent (NCBI) | compare |
| b1672 | ydhW | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b4435 | isrC | +0.4 | 1.2 | unknown RNA (NCBI) | compare |
| b3507 | dctR | +0.4 | 3.3 | protein involved in metabolism of C4-dicarboxylates (Katherine Huang) | compare |
| b1836 | yebV | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b2690 | yqaB | +0.4 | 1.8 | predicted hydrolase (NCBI) | compare |
| b2287 | nuoB | +0.4 | 1.5 | NADH dehydrogenase subunit B (NCBI) | compare |
| b2003 | yeeT | +0.4 | 0.9 | CP4-44 prophage; predicted protein (NCBI) | compare |
| b2923 | argO | +0.4 | 2.1 | arginine exporter protein (NCBI) | compare |
| b4215 | ytfI | +0.4 | 1.0 | hypothetical protein (NCBI) | compare |
| b1661 | cfa | +0.4 | 2.4 | cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) (NCBI) | compare |
| b1306 | pspC | +0.4 | 1.0 | DNA-binding transcriptional activator (NCBI) | compare |
| b1917 | yecC | +0.4 | 1.4 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b1725 | yniA | +0.4 | 1.5 | predicted phosphotransferase/kinase (NCBI) | compare |
| b0841 | ybjG | +0.4 | 2.3 | undecaprenyl pyrophosphate phosphatase (NCBI) | compare |
| b3516 | gadX | +0.4 | 3.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1345 | intR | +0.4 | 2.7 | Rac prophage; integrase (NCBI) | compare |
| b3504 | yhiS | +0.4 | 0.3 | hypothetical protein (RefSeq) | compare |
| b2165 | yeiN | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b1198 | dhaM | +0.4 | 1.6 | fused predicted dihydroxyacetone-specific PTS enzymes: HPr component/EI component (RefSeq) | compare |
| b2859 | ygeO | +0.4 | 0.9 | hypothetical protein (RefSeq) | compare |
| b1200 | b1200 | +0.4 | 1.7 | putative dihydroxyacetone kinase (EC 2.7.1.2) (VIMSS) | compare |
| b0406 | tgt | +0.4 | 1.8 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b1557 | cspB | +0.4 | 1.1 | Qin prophage; cold shock protein (NCBI) | compare |
| b0164 | yaeI | +0.4 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1205 | ychH | +0.4 | 1.0 | predicted inner membrane protein (NCBI) | compare |
| b1282 | yciH | +0.4 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b3398 | yrfF | +0.4 | 1.4 | predicted inner membrane protein (NCBI) | compare |
| b1819 | manZ | +0.4 | 1.6 | mannose-specific enzyme IID component of PTS (NCBI) | compare |
| b4603 | rseX | +0.4 | 0.3 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b0850 | ybjC | +0.4 | 1.5 | predicted inner membrane protein (NCBI) | compare |
| b1427 | rimL | +0.4 | 1.0 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b1453 | ansP | +0.4 | 1.5 | L-asparagine permease (VIMSS) | compare |
| b4633 | xisD | +0.4 | 1.4 | no description | compare |
| b1334 | fnr | +0.4 | 1.3 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b0065 | yabI | +0.4 | 1.9 | conserved inner membrane protein (NCBI) | compare |
| b1392 | paaE | +0.4 | 1.3 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b4554 | yibT | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b0750 | nadA | +0.4 | 2.4 | quinolinate synthetase (NCBI) | compare |
| b4544 | yfbW | +0.4 | 1.0 | hypothetical protein (NCBI) | compare |
| b2904 | gcvH | +0.4 | 1.1 | glycine cleavage system protein H (NCBI) | compare |
| b3106 | yhaK | +0.4 | 1.6 | predicted pirin-related protein (NCBI) | compare |
| b2673 | nrdH | +0.4 | 1.0 | glutaredoxin-like protein (NCBI) | compare |
| b1408 | b1408 | +0.4 | 1.6 | probable enzyme (VIMSS) | compare |
| b1620 | malI | +0.4 | 1.3 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0882 | clpA | +0.4 | 2.8 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b2460 | eutQ | +0.4 | 2.3 | hypothetical protein (NCBI) | compare |
| b1287 | yciW | +0.4 | 1.3 | putative oxidoreductase (VIMSS) | compare |