| | gene | name | fitness | t score | description | |
|---|
| b3977 | tyrU | -4.4 | -1.5 | tRNA-Tyr (NCBI) | compare |
| b2620 | smpB | -3.5 | -2.4 | SsrA-binding protein (NCBI) | compare |
| b2168 | fruK | -3.5 | -2.0 | 1-phosphofructokinase (NCBI) | compare |
| b3390 | aroK | -3.3 | -3.0 | shikimate kinase I (NCBI) | compare |
| b0683 | fur | -3.0 | -1.7 | ferric uptake regulator (NCBI) | compare |
| b1493 | gadB | -2.7 | -1.3 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b1860 | ruvB | -2.6 | -1.8 | Holliday junction DNA helicase B (NCBI) | compare |
| b3169 | nusA | -2.6 | -4.4 | transcription elongation factor NusA (NCBI) | compare |
| b3183 | obgE | -2.6 | -1.7 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b0053 | surA | -2.6 | -5.5 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b0564 | appY | -2.4 | -1.5 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b3863 | polA | -2.3 | -1.6 | DNA polymerase I (NCBI) | compare |
| b1161 | ycgX | -2.2 | -1.1 | hypothetical protein (NCBI) | compare |
| b2699 | recA | -2.2 | -1.5 | recombinase A (NCBI) | compare |
| b0200 | gmhB | -2.1 | -1.5 | hypothetical protein (NCBI) | compare |
| b3619 | rfaD | -2.1 | -4.6 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b3613 | yibP | -2.1 | -3.9 | putative membrane protein (VIMSS) | compare |
| b2846 | yqeH | -2.1 | -1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1765 | ydjA | -2.0 | -1.4 | predicted oxidoreductase (NCBI) | compare |
| b0439 | lon | -2.0 | -5.9 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b0630 | lipB | -1.9 | -1.3 | protein of lipoate biosynthesis (VIMSS) | compare |
| b2282 | nuoH | -1.9 | -3.8 | NADH dehydrogenase subunit H (NCBI) | compare |
| b4042 | dgkA | -1.8 | -2.8 | diacylglycerol kinase (NCBI) | compare |
| b4451 | ryhB | -1.8 | -1.5 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b2894 | xerD | -1.8 | -1.2 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b1129 | phoQ | -1.7 | -1.7 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b1984 | asnW | -1.7 | -1.3 | tRNA-Asn (NCBI) | compare |
| b1290 | sapF | -1.7 | -2.1 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0049 | apaH | -1.7 | -3.5 | diadenosinetetraphosphatase (NCBI) | compare |
| b3979 | thrT | -1.6 | -0.5 | tRNA-Thr (NCBI) | compare |
| b2287 | nuoB | -1.6 | -3.0 | NADH dehydrogenase subunit B (NCBI) | compare |
| b3811 | xerC | -1.6 | -1.1 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b3052 | rfaE | -1.6 | -4.4 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b3778 | rep | -1.6 | -5.9 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b2281 | nuoI | -1.5 | -2.9 | NADH dehydrogenase subunit I (NCBI) | compare |
| b2528 | iscA | -1.5 | -1.6 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b2820 | recB | -1.5 | -1.0 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b3624 | rfaZ | -1.5 | -2.4 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b3816 | corA | -1.5 | -6.0 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b2830 | nudH | -1.4 | -1.4 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b2279 | nuoK | -1.4 | -2.4 | NADH dehydrogenase subunit K (NCBI) | compare |
| b1236 | galU | -1.4 | -3.9 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b1842 | holE | -1.4 | -2.0 | DNA polymerase III, theta subunit (NCBI) | compare |
| b3706 | trmE | -1.4 | -4.8 | tRNA modification GTPase (NCBI) | compare |
| b2286 | nuoC | -1.4 | -3.9 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b3026 | qseC | -1.4 | -3.9 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b1850 | eda | -1.4 | -1.3 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b1292 | sapC | -1.4 | -2.1 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0088 | murD | -1.3 | -2.9 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) | compare |
| b2935 | tktA | -1.3 | -2.2 | transketolase 1, thiamin-binding (NCBI) | compare |
| b3839 | tatC | -1.3 | -3.9 | TatABCE protein translocation system subunit (NCBI) | compare |
| b3290 | trkA | -1.3 | -2.0 | potassium transporter peripheral membrane component (NCBI) | compare |
| b2288 | nuoA | -1.3 | -3.2 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b3426 | glpD | -1.3 | -3.3 | sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding (NCBI) | compare |
| b1613 | manA | -1.3 | -2.0 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b3620 | rfaF | -1.3 | -4.4 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b2277 | nuoM | -1.3 | -3.9 | NADH dehydrogenase subunit M (NCBI) | compare |
| b4171 | miaA | -1.2 | -3.1 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b4201 | priB | -1.2 | -2.5 | primosomal replication protein N (NCBI) | compare |
| b3792 | wzxE | -1.2 | -5.4 | O-antigen translocase (NCBI) | compare |
| b3728 | pstS | -1.2 | -2.6 | phosphate transporter subunit (NCBI) | compare |
| b0738 | tolR | -1.2 | -2.5 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0437 | clpP | -1.2 | -3.2 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b1863 | ruvC | -1.2 | -1.6 | Holliday junction resolvase (NCBI) | compare |
| b2278 | nuoL | -1.2 | -6.0 | NADH dehydrogenase subunit L (NCBI) | compare |
| b1160 | elbA | -1.2 | -1.3 | hypothetical protein (NCBI) | compare |
| b2897 | ygfY | -1.1 | -3.0 | hypothetical protein (NCBI) | compare |
| b0080 | fruR | -1.1 | -3.9 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3405 | ompR | -1.1 | -3.1 | osmolarity response regulator (NCBI) | compare |
| b3741 | gidA | -1.1 | -3.2 | glucose-inhibited division protein A (NCBI) | compare |
| b2318 | truA | -1.1 | -2.1 | tRNA pseudouridine synthase A (NCBI) | compare |
| b0740 | tolB | -1.1 | -3.2 | translocation protein TolB precursor (NCBI) | compare |
| b3021 | ygiT | -1.1 | -1.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0051 | ksgA | -1.1 | -2.6 | dimethyladenosine transferase (NCBI) | compare |
| b2276 | nuoN | -1.1 | -3.5 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b3726 | pstA | -1.1 | -3.6 | phosphate transporter subunit (NCBI) | compare |
| b1291 | sapD | -1.1 | -1.2 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b4698 | mgrR | -1.1 | -2.2 | sRNA antisense regulator down regulates YgdQ and EptB, PhoPQ-regulated, Hfq-dependent; affects sensitivity to antimicrobial peptides (RefSeq) | compare |
| b1476 | fdnI | -1.1 | -1.0 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b2330 | yfcB | -1.1 | -1.4 | putative adenine-specific methylase (VIMSS) | compare |
| b4647 | mokA | -1.0 | -0.8 | no description | compare |
| b4402 | yjjY | -1.0 | -0.9 | hypothetical protein (NCBI) | compare |
| b1347 | ydaC | -1.0 | -0.5 | Rac prophage; predicted protein (NCBI) | compare |
| b2283 | nuoG | -1.0 | -4.6 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b1855 | lpxM | -1.0 | -2.5 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b4515 | ybgT | -1.0 | -1.5 | hypothetical protein (NCBI) | compare |
| b1306 | pspC | -1.0 | -1.9 | DNA-binding transcriptional activator (NCBI) | compare |
| b1804 | rnd | -1.0 | -3.5 | ribonuclease D (NCBI) | compare |
| b4146 | yjeK | -1.0 | -1.6 | predicted lysine aminomutase (NCBI) | compare |
| b1165 | ymgA | -1.0 | -0.6 | hypothetical protein (NCBI) | compare |
| b0888 | trxB | -1.0 | -2.6 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b1951 | rcsA | -1.0 | -1.8 | DNA-binding transcriptional activator, co-regulator with RcsB (NCBI) | compare |
| b4702 | mgtL | -1.0 | -1.7 | regulatory leader peptide for mgtA (NCBI) | compare |
| b1351 | racC | -1.0 | -0.6 | Rac prophage; predicted protein (NCBI) | compare |
| b0890 | ftsK | -0.9 | -2.8 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b0737 | tolQ | -0.9 | -2.0 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b4685 | yrbN | -0.9 | -1.8 | expressed protein (RefSeq) | compare |
| b2280 | nuoJ | -0.9 | -2.8 | NADH dehydrogenase subunit J (NCBI) | compare |
| b1594 | dgsA | -0.9 | -2.5 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4202 | rpsR | -0.9 | -1.1 | 30S ribosomal protein S18 (NCBI) | compare |
| b3636 | rpmG | -0.9 | -0.9 | 50S ribosomal protein L33 (NCBI) | compare |
| b4585 | sroB | -0.9 | -1.2 | Novel sRNA, function unknown (RefSeq) | compare |
| b3631 | rfaG | -0.9 | -6.1 | glucosyltransferase I (NCBI) | compare |
| b3916 | pfkA | -0.9 | -2.2 | 6-phosphofructokinase (NCBI) | compare |
| b0677 | nagA | -0.9 | -3.7 | N-acetylglucosamine-6-phosphate deacetylase (NCBI) | compare |
| b4653 | yicT | -0.8 | -1.5 | no description | compare |
| b0741 | pal | -0.8 | -1.8 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b4679 | yohP | -0.8 | -1.8 | expressed protein (RefSeq) | compare |
| b1175 | minD | -0.8 | -2.7 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b4177 | purA | -0.8 | -0.8 | adenylosuccinate synthetase (NCBI) | compare |
| b1084 | rne | -0.8 | -3.5 | fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) | compare |
| b3181 | greA | -0.8 | -3.2 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b2284 | nuoF | -0.8 | -3.0 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b1628 | rsxB | -0.8 | -1.4 | electron transport complex protein RnfB (NCBI) | compare |
| b4613 | dinQ | -0.8 | -1.2 | Damage inducible, function unknown (RefSeq) | compare |
| b3649 | rpoZ | -0.8 | -1.9 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b3630 | rfaP | -0.8 | -4.7 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b2947 | gshB | -0.8 | -2.2 | glutathione synthetase (NCBI) | compare |
| b1108 | ycfP | -0.8 | -2.0 | orf, hypothetical protein (VIMSS) | compare |
| b0767 | ybhE | -0.8 | -1.5 | 6-phosphogluconolactonase (NCBI) | compare |
| b1299 | puuR | -0.8 | -2.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4631 | ykgQ | -0.8 | -1.3 | no description | compare |
| b3781 | trxA | -0.8 | -1.9 | thioredoxin 1 (VIMSS) | compare |
| b2962 | yggX | -0.8 | -2.1 | hypothetical protein (NCBI) | compare |
| b1286 | rnb | -0.8 | -1.4 | exoribonuclease II (NCBI) | compare |
| b3807 | cyaY | -0.8 | -3.1 | frataxin-like protein (NCBI) | compare |
| b2906 | visC | -0.8 | -3.3 | hypothetical protein (NCBI) | compare |
| b2652 | ileY | -0.8 | -0.5 | tRNA-Ile (NCBI) | compare |
| b3438 | gntR | -0.8 | -3.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1130 | phoP | -0.8 | -1.4 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b0471 | ybaB | -0.7 | -1.5 | hypothetical protein (NCBI) | compare |
| b1380 | ldhA | -0.7 | -2.0 | D-lactate dehydrogenase (NCBI) | compare |
| b1712 | ihfA | -0.7 | -1.0 | integration host factor subunit alpha (NCBI) | compare |
| b2024 | hisA | -0.7 | -1.8 | N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'- phosphoribosyl)-4-imidazolecarboxamide isomerase (VIMSS) | compare |
| b4345 | mcrC | -0.7 | -0.7 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b4513 | kdpF | -0.7 | -2.0 | potassium ion accessory transporter subunit (NCBI) | compare |
| b3775 | ppiC | -0.7 | -2.2 | peptidyl-prolyl cis-trans isomerase C (rotamase C) (NCBI) | compare |
| b2498 | upp | -0.7 | -1.3 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b1658 | purR | -0.7 | -3.0 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b0232 | yafN | -0.7 | -0.6 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b4012 | yjaB | -0.7 | -2.1 | predicted acetyltransferase (NCBI) | compare |
| b0623 | cspE | -0.7 | -1.3 | cold shock protein E (NCBI) | compare |
| b0113 | pdhR | -0.7 | -3.1 | transcriptional regulator of pyruvate dehydrogenase complex (NCBI) | compare |
| b0912 | ihfB | -0.7 | -1.6 | integration host factor subunit beta (NCBI) | compare |
| b0849 | grxA | -0.7 | -2.4 | glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) (NCBI) | compare |
| b3162 | deaD | -0.7 | -2.2 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b3621 | rfaC | -0.7 | -2.8 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b3398 | yrfF | -0.7 | -2.6 | predicted inner membrane protein (NCBI) | compare |
| b0438 | clpX | -0.7 | -3.6 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b0726 | sucA | -0.7 | -1.7 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b1040 | csgD | -0.7 | -1.0 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b1518 | lsrG | -0.7 | -0.9 | autoinducer-2 (AI-2) modifying protein LsrG (NCBI) | compare |
| b3844 | fre | -0.7 | -2.4 | NAD(P)H-flavin reductase (NCBI) | compare |
| b1334 | fnr | -0.7 | -1.5 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b0407 | yajC | -0.7 | -1.5 | preprotein translocase subunit YajC (NCBI) | compare |
| b0685 | ybfE | -0.7 | -0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1620 | malI | -0.7 | -0.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0977 | hyaF | -0.7 | -2.0 | protein involved in nickel incorporation into hydrogenase-1 proteins (NCBI) | compare |
| b1949 | fliQ | -0.6 | -2.0 | flagellar biosynthesis protein Q (NCBI) | compare |
| b3261 | fis | -0.6 | -0.9 | DNA-binding protein Fis (NCBI) | compare |
| b2768 | ygcP | -0.6 | -3.0 | predicted anti-terminator regulatory protein (NCBI) | compare |
| b3860 | dsbA | -0.6 | -3.3 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b0721 | sdhC | -0.6 | -2.5 | succinate dehydrogenase cytochrome b556 large membrane subunit (NCBI) | compare |
| b3389 | aroB | -0.6 | -3.4 | 3-dehydroquinate synthase (NCBI) | compare |
| b0728 | sucC | -0.6 | -2.4 | succinyl-CoA synthetase subunit beta (NCBI) | compare |
| b0791 | ybhQ | -0.6 | -1.8 | predicted inner membrane protein (NCBI) | compare |
| b1729 | ydjN | -0.6 | -1.3 | predicted transporter (NCBI) | compare |
| b2476 | purC | -0.6 | -1.3 | phosphoribosylaminoimidazole-succinocarboxamidesynthase (NCBI) | compare |
| b1088 | yceD | -0.6 | -1.5 | hypothetical protein (NCBI) | compare |
| b1086 | rluC | -0.6 | -2.6 | 23S rRNA pseudouridylate synthase (NCBI) | compare |
| b0386 | proC | -0.6 | -1.7 | pyrroline-5-carboxylate reductase (NCBI) | compare |
| b0004 | thrC | -0.6 | -3.3 | threonine synthase (NCBI) | compare |
| b2707 | srlR | -0.6 | -2.6 | DNA-bindng transcriptional repressor (NCBI) | compare |
| b1279 | yciS | -0.6 | -0.8 | conserved inner membrane protein (NCBI) | compare |
| b1630 | rsxD | -0.6 | -2.8 | electron transport complex protein RnfD (NCBI) | compare |
| b1939 | fliG | -0.6 | -1.3 | flagellar motor switch protein G (NCBI) | compare |
| b1563 | relE | -0.6 | -0.7 | Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI) | compare |
| b3867 | hemN | -0.6 | -3.9 | O2-independent coproporphyrinogen III oxidase (VIMSS) | compare |
| b2340 | sixA | -0.6 | -2.5 | phosphohistidine phosphatase (NCBI) | compare |
| b1400 | paaY | -0.6 | -2.2 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b0605 | ahpC | -0.6 | -1.6 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b0556 | rzpD | -0.6 | -1.7 | DLP12 prophage; predicted murein endopeptidase (NCBI) | compare |
| b2674 | nrdI | -0.6 | -1.7 | hypothetical protein (NCBI) | compare |
| b1777 | b1777 | -0.6 | -1.0 | orf, hypothetical protein (VIMSS) | compare |
| b4481 | rffT | -0.6 | -2.7 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b2822 | recC | -0.6 | -2.9 | exonuclease V (RecBCD complex), gamma chain (NCBI) | compare |
| b4025 | pgi | -0.6 | -3.2 | glucose-6-phosphate isomerase (NCBI) | compare |
| b4441 | glmY | -0.6 | -1.0 | sRNA activator of glmS mRNA (RefSeq) | compare |
| b4179 | vacB | -0.6 | -2.5 | putative enzyme (VIMSS) | compare |
| b2553 | glnB | -0.6 | -2.4 | regulatory protein P-II for glutamine synthetase (NCBI) | compare |
| b4232 | fbp | -0.6 | -3.7 | fructose-1,6-bisphosphatase (NCBI) | compare |
| b3414 | gntY | -0.6 | -2.1 | predicted gluconate transport associated protein (NCBI) | compare |
| b2285 | nuoE | -0.6 | -1.1 | NADH dehydrogenase subunit E (NCBI) | compare |
| b2808 | gcvA | -0.6 | -1.7 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2325 | yfcL | -0.6 | -1.1 | hypothetical protein (NCBI) | compare |
| b3292 | zntR | -0.6 | -1.7 | zinc-responsive transcriptional regulator (NCBI) | compare |
| b0251 | yafY | -0.6 | -1.8 | CP4-6 prophage; predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b1969 | yedW | -0.6 | -2.6 | putative 2-component transcriptional regulator (VIMSS) | compare |
| b3138 | agaB | -0.6 | -1.9 | N-acetylgalactosamine-specific enzyme IIB component of PTS (NCBI) | compare |
| b1125 | potB | -0.6 | -1.7 | spermidine/putrescine ABC transporter membrane protein (NCBI) | compare |