| | gene | name | fitness | t score | description | |
|---|
| b1855 | lpxM | -3.2 | -5.6 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b0949 | uup | -3.0 | -9.5 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b3790 | rffC | -3.0 | -6.9 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b4603 | rseX | -2.9 | -1.1 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b1429 | tehA | -2.9 | -1.9 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b3791 | rffA | -2.9 | -9.9 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b0143 | pcnB | -2.7 | -7.3 | poly(A) polymerase I (VIMSS) | compare |
| b2528 | iscA | -2.7 | -2.5 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b1175 | minD | -2.6 | -4.7 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b4481 | rffT | -2.6 | -8.4 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b3183 | obgE | -2.5 | -1.7 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b3842 | rfaH | -2.5 | -6.8 | transcriptional activator RfaH (NCBI) | compare |
| b0439 | lon | -2.3 | -4.1 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b3786 | rffE | -2.3 | -13.9 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b3787 | rffD | -2.3 | -10.5 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b3794 | rffM | -2.2 | -7.8 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b3443 | yrhA | -2.2 | -2.5 | orf, hypothetical protein (VIMSS) | compare |
| b3911 | cpxA | -2.2 | -9.6 | two-component sensor protein (NCBI) | compare |
| b0688 | pgm | -2.2 | -2.9 | phosphoglucomutase (NCBI) | compare |
| b0049 | apaH | -2.1 | -2.0 | diadenosinetetraphosphatase (NCBI) | compare |
| b1765 | ydjA | -2.1 | -1.1 | predicted oxidoreductase (NCBI) | compare |
| b3784 | rfe | -2.1 | -11.6 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b1332 | ynaJ | -2.0 | -1.1 | predicted inner membrane protein (NCBI) | compare |
| b4171 | miaA | -1.9 | -3.1 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b1573 | ydfC | -1.9 | -1.3 | Qin prophage; predicted protein (RefSeq) | compare |
| b1090 | plsX | -1.9 | -3.5 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b3839 | tatC | -1.9 | -3.4 | TatABCE protein translocation system subunit (NCBI) | compare |
| b3500 | gor | -1.9 | -1.8 | glutathione reductase (NCBI) | compare |
| b3405 | ompR | -1.8 | -3.2 | osmolarity response regulator (NCBI) | compare |
| b4702 | mgtL | -1.8 | -2.0 | regulatory leader peptide for mgtA (NCBI) | compare |
| b3631 | rfaG | -1.7 | -11.6 | glucosyltransferase I (NCBI) | compare |
| b1865 | nudB | -1.7 | -1.6 | dATP pyrophosphohydrolase (NCBI) | compare |
| b3778 | rep | -1.6 | -6.2 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b3792 | wzxE | -1.6 | -5.2 | O-antigen translocase (NCBI) | compare |
| b4647 | mokA | -1.6 | -1.0 | no description | compare |
| b1185 | dsbB | -1.5 | -2.5 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b2318 | truA | -1.5 | -2.8 | tRNA pseudouridine synthase A (NCBI) | compare |
| b2846 | yqeH | -1.5 | -1.0 | orf, hypothetical protein (VIMSS) | compare |
| b0357 | yaiN | -1.5 | -1.3 | putative alpha helix chain (VIMSS) | compare |
| b3162 | deaD | -1.5 | -4.0 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b1108 | ycfP | -1.5 | -2.0 | orf, hypothetical protein (VIMSS) | compare |
| b0232 | yafN | -1.5 | -1.1 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b1192 | ldcA | -1.5 | -1.4 | L,D-carboxypeptidase A (NCBI) | compare |
| b1164 | ycgZ | -1.4 | -1.6 | hypothetical protein (NCBI) | compare |
| b3414 | gntY | -1.4 | -4.6 | predicted gluconate transport associated protein (NCBI) | compare |
| b0200 | gmhB | -1.4 | -1.3 | hypothetical protein (NCBI) | compare |
| b1563 | relE | -1.4 | -1.5 | Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI) | compare |
| b0400 | phoR | -1.4 | -6.0 | sensory histidine kinase in two-component regulatory system with PhoB (NCBI) | compare |
| b1861 | ruvA | -1.4 | -0.9 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b1293 | sapB | -1.4 | -1.3 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b4201 | priB | -1.3 | -1.9 | primosomal replication protein N (NCBI) | compare |
| b3630 | rfaP | -1.3 | -6.5 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b2910 | zapA | -1.3 | -5.1 | protein that localizes to the cytokinetic ring (NCBI) | compare |
| b1286 | rnb | -1.3 | -1.9 | exoribonuclease II (NCBI) | compare |
| b3935 | priA | -1.3 | -3.3 | primosome assembly protein PriA (NCBI) | compare |
| b1648 | b1648 | -1.3 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1850 | eda | -1.3 | -1.1 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b1739 | osmE | -1.3 | -2.4 | DNA-binding transcriptional activator (NCBI) | compare |
| b4522 | yciX_1 | -1.3 | -3.0 | hypothetical protein (NCBI) | compare |
| b2531 | iscR | -1.3 | -1.3 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3164 | pnp | -1.2 | -2.3 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b3706 | trmE | -1.2 | -2.2 | tRNA modification GTPase (NCBI) | compare |
| b2114 | metG | -1.2 | -1.7 | methionyl-tRNA synthetase (NCBI) | compare |
| b3341 | rpsG | -1.2 | -1.3 | 30S ribosomal protein S7 (NCBI) | compare |
| b4410 | ecnA | -1.2 | -1.2 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b0739 | tolA | -1.2 | -1.4 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b1104 | ycfL | -1.2 | -1.1 | hypothetical protein (NCBI) | compare |
| b0737 | tolQ | -1.2 | -1.5 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b1607 | ydgC | -1.2 | -1.0 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b1485 | ddpC | -1.2 | -3.2 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b3026 | qseC | -1.2 | -2.2 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b1758 | b1758 | -1.2 | -1.0 | putative cytochrome oxidase (VIMSS) | compare |
| b1362 | rzpR | -1.2 | -2.3 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b0685 | ybfE | -1.1 | -1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4179 | vacB | -1.1 | -4.3 | putative enzyme (VIMSS) | compare |
| b2222 | atoA | -1.1 | -3.8 | acetyl-CoA:acetoacetyl-CoA transferase, beta subunit (NCBI) | compare |
| b1882 | cheY | -1.1 | -0.4 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b3916 | pfkA | -1.1 | -1.0 | 6-phosphofructokinase (NCBI) | compare |
| b3387 | dam | -1.1 | -6.5 | DNA adenine methylase (NCBI) | compare |
| b1999 | yeeP | -1.1 | -2.9 | putative histone (VIMSS) | compare |
| b2082 | ogrK | -1.1 | -2.1 | DNA-binding transcriptional regulator prophage P2 remnant (NCBI) | compare |
| b2642 | yfjW | -1.1 | -1.3 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b1591 | b1591 | -1.0 | -1.8 | putative oxidoreductase component (VIMSS) | compare |
| b4325 | yjiC | -1.0 | -2.6 | orf, hypothetical protein (VIMSS) | compare |
| b1921 | fliZ | -1.0 | -2.4 | orf, hypothetical protein (VIMSS) | compare |
| b0630 | lipB | -1.0 | -0.9 | protein of lipoate biosynthesis (VIMSS) | compare |
| b1412 | azoR | -1.0 | -1.5 | acyl carrier protein phosphodiesterase (NCBI) | compare |
| b1730 | ydjO | -1.0 | -0.7 | predicted protein (RefSeq) | compare |
| b2237 | inaA | -1.0 | -1.9 | hypothetical protein (NCBI) | compare |
| b3626 | rfaJ | -1.0 | -3.4 | UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase (NCBI) | compare |
| b3180 | yhbY | -1.0 | -3.7 | predicted RNA-binding protein (NCBI) | compare |
| b0841 | ybjG | -1.0 | -3.4 | undecaprenyl pyrophosphate phosphatase (NCBI) | compare |
| b4407 | thiS | -1.0 | -1.4 | sulfur carrier protein ThiS (NCBI) | compare |
| b4436 | ryeC | -0.9 | -1.1 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b4520 | ymgF | -0.9 | -1.2 | hypothetical protein (NCBI) | compare |
| b1595 | ynfL | -0.9 | -1.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0740 | tolB | -0.9 | -1.6 | translocation protein TolB precursor (NCBI) | compare |
| b1900 | araG | -0.9 | -2.9 | fused L-arabinose transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1671 | ydhX | -0.9 | -1.4 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b1588 | ynfF | -0.9 | -2.9 | oxidoreductase subunit (RefSeq) | compare |
| b3181 | greA | -0.9 | -1.5 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b4649 | ysaD | -0.9 | -2.3 | no description | compare |
| b1346 | ydaQ | -0.9 | -1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1123 | potD | -0.9 | -3.4 | spermidine/putrescine ABC transporter periplasmic substrate-binding protein (NCBI) | compare |
| b1618 | uidR | -0.9 | -2.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2617 | smpA | -0.9 | -2.4 | small membrane protein A (VIMSS) | compare |
| b3390 | aroK | -0.9 | -1.2 | shikimate kinase I (NCBI) | compare |
| b3644 | yicC | -0.9 | -3.3 | hypothetical protein (NCBI) | compare |
| b3199 | yrbK | -0.9 | -2.2 | hypothetical protein (NCBI) | compare |
| b1290 | sapF | -0.8 | -0.7 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b4415 | hokE | -0.8 | -2.5 | toxic polypeptide, small (NCBI) | compare |
| b0145 | dksA | -0.8 | -2.2 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b1857 | yebL | -0.8 | -2.1 | putative adhesin (VIMSS) | compare |
| b1144 | ymfJ | -0.8 | -1.5 | orf, hypothetical protein (VIMSS) | compare |
| b0741 | pal | -0.8 | -1.8 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b1493 | gadB | -0.8 | -0.5 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b3237 | argR | -0.8 | -2.3 | arginine repressor (NCBI) | compare |
| b3950 | frwB | -0.8 | -2.2 | predicted enzyme IIB component of PTS (NCBI) | compare |
| b4178 | yjeB | -0.8 | -2.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1712 | ihfA | -0.8 | -0.7 | integration host factor subunit alpha (NCBI) | compare |
| b2017 | yefM | -0.8 | -1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1603 | pntA | -0.8 | -1.5 | NAD(P) transhydrogenase subunit alpha (NCBI) | compare |
| b0683 | fur | -0.8 | -0.5 | ferric uptake regulator (NCBI) | compare |
| b3860 | dsbA | -0.8 | -4.2 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b0802 | ybiJ | -0.8 | -1.7 | hypothetical protein (NCBI) | compare |
| b2198 | ccmD | -0.8 | -1.1 | cytochrome c biogenesis protein (NCBI) | compare |
| b3021 | ygiT | -0.8 | -1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4369 | leuP | -0.8 | -1.3 | tRNA-Leu (NCBI) | compare |
| b0976 | hyaE | -0.8 | -2.2 | protein involved in processing of HyaA and HyaB proteins (NCBI) | compare |
| b0908 | aroA | -0.8 | -3.7 | 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) | compare |
| b1186 | nhaB | -0.8 | -3.0 | NhaB sodium/proton transporter (Katherine Huang) | compare |
| b0888 | trxB | -0.8 | -1.4 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b3838 | tatB | -0.8 | -3.3 | sec-independent translocase (NCBI) | compare |
| b0406 | tgt | -0.8 | -3.1 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b3260 | dusB | -0.8 | -2.6 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b4503 | yafF | -0.8 | -0.4 | no description | compare |
| b2620 | smpB | -0.7 | -0.6 | SsrA-binding protein (NCBI) | compare |
| b3961 | oxyR | -0.7 | -4.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2044 | wcaL | -0.7 | -1.7 | predicted glycosyl transferase (NCBI) | compare |
| b2498 | upp | -0.7 | -1.5 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b4414 | tff | -0.7 | -1.7 | unknown RNA (NCBI) | compare |
| b2136 | yohD | -0.7 | -1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2510 | b2510 | -0.7 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2934 | cmtB | -0.7 | -0.6 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b0471 | ybaB | -0.7 | -1.9 | hypothetical protein (NCBI) | compare |
| b3009 | yghB | -0.7 | -3.6 | conserved inner membrane protein (NCBI) | compare |
| b4416 | rybA | -0.7 | -0.9 | unknown RNA (NCBI) | compare |
| b1444 | ydcW | -0.7 | -2.5 | medium chain aldehyde dehydrogenase (NCBI) | compare |
| b2446 | yffO | -0.7 | -1.6 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b1105 | ycfM | -0.7 | -1.6 | predicted outer membrane lipoprotein (NCBI) | compare |
| b1727 | yniC | -0.7 | -1.7 | predicted hydrolase (NCBI) | compare |
| b0149 | mrcB | -0.7 | -4.5 | penicillin-binding protein 1b (NCBI) | compare |
| b1348 | lar | -0.7 | -1.0 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b2007 | yeeX | -0.7 | -1.1 | conserved protein (RefSeq) | compare |
| b1969 | yedW | -0.7 | -2.2 | putative 2-component transcriptional regulator (VIMSS) | compare |
| b3493 | pitA | -0.7 | -3.2 | phosphate transporter, low-affinity (NCBI) | compare |
| b1989 | asnV | -0.7 | -1.2 | tRNA-Asn (NCBI) | compare |
| b0623 | cspE | -0.7 | -1.3 | cold shock protein E (NCBI) | compare |
| b1926 | fliT | -0.7 | -1.4 | predicted chaperone (NCBI) | compare |
| b3928 | yiiU | -0.7 | -3.3 | hypothetical protein (NCBI) | compare |
| b2909 | ygfB | -0.7 | -4.0 | orf, hypothetical protein (VIMSS) | compare |
| b3082 | ygjM | -0.7 | -0.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0849 | grxA | -0.7 | -1.0 | glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) (NCBI) | compare |
| b0564 | appY | -0.7 | -0.7 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b1567 | intK | -0.7 | -1.3 | Qin prophage; predicted protein (RefSeq) | compare |
| b1533 | ydeD | -0.7 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b3761 | trpT | -0.7 | -1.0 | tRNA-Trp (NCBI) | compare |
| b2424 | cysU | -0.7 | -1.1 | sulfate/thiosulfate transporter subunit (NCBI) | compare |
| b4426 | isrA | -0.6 | -1.3 | unknown RNA (NCBI) | compare |
| b1383 | ydbL | -0.6 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4578 | insP | -0.6 | -1.5 | no description | compare |
| b2009 | sbmC | -0.6 | -1.6 | DNA gyrase inhibitor (NCBI) | compare |
| b2175 | spr | -0.6 | -2.4 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b2582 | trxC | -0.6 | -1.1 | thioredoxin 2 (NCBI) | compare |
| b1304 | pspA | -0.6 | -1.9 | regulatory protein for phage-shock-protein operon (NCBI) | compare |
| b0632 | dacA | -0.6 | -2.7 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b2744 | surE | -0.6 | -2.9 | acid phosphatase (NCBI) | compare |
| b2808 | gcvA | -0.6 | -1.7 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4585 | sroB | -0.6 | -0.7 | Novel sRNA, function unknown (RefSeq) | compare |
| b0407 | yajC | -0.6 | -1.7 | preprotein translocase subunit YajC (NCBI) | compare |
| b0948 | ycbY | -0.6 | -2.7 | predicted methyltransferase (NCBI) | compare |
| b2698 | recX | -0.6 | -1.7 | RecA regulator RecX (NCBI) | compare |
| b1382 | ynbE | -0.6 | -0.7 | predicted lipoprotein (NCBI) | compare |
| b1675 | ydhZ | -0.6 | -2.3 | hypothetical protein (NCBI) | compare |
| b3198 | kdsC | -0.6 | -1.4 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b1085 | b1085 | -0.6 | -1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1853 | yebK | -0.6 | -1.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1804 | rnd | -0.6 | -2.0 | ribonuclease D (NCBI) | compare |
| b3741 | gidA | -0.6 | -0.4 | glucose-inhibited division protein A (NCBI) | compare |
| b4697 | yrdF | -0.6 | -1.7 | no description | compare |
| b0583 | entD | -0.6 | -1.4 | phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex (NCBI) | compare |
| b4536 | yobH | -0.6 | -2.1 | hypothetical protein (NCBI) | compare |
| b0937 | ssuE | -0.6 | -1.4 | NAD(P)H-dependent FMN reductase (NCBI) | compare |
| b2363 | yfdT | -0.6 | -1.0 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b1944 | fliL | -0.6 | -2.2 | flagellar basal body-associated protein FliL (NCBI) | compare |
| b0249 | ykfF | -0.6 | -1.5 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b2142 | yohK | -0.6 | -2.6 | predicted inner membrane protein (NCBI) | compare |
| b1307 | pspD | -0.6 | -1.0 | peripheral inner membrane phage-shock protein (NCBI) | compare |
| b2906 | visC | -0.6 | -2.5 | hypothetical protein (NCBI) | compare |
| b2051 | wcaH | -0.6 | -1.0 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |