| | gene | name | fitness | t score | description | |
|---|
| b1476 | fdnI | -4.1 | -1.5 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b0949 | uup | -4.0 | -9.6 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b3164 | pnp | -2.9 | -3.1 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b0439 | lon | -2.8 | -1.9 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b1758 | b1758 | -2.6 | -1.3 | putative cytochrome oxidase (VIMSS) | compare |
| b3791 | rffA | -2.5 | -9.1 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b0143 | pcnB | -2.5 | -5.9 | poly(A) polymerase I (VIMSS) | compare |
| b3183 | obgE | -2.5 | -1.7 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b4529 | ydbJ | -2.5 | -1.3 | hypothetical protein (NCBI) | compare |
| b3977 | tyrU | -2.5 | -0.9 | tRNA-Tyr (NCBI) | compare |
| b0232 | yafN | -2.3 | -1.2 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b3405 | ompR | -2.3 | -3.1 | osmolarity response regulator (NCBI) | compare |
| b2642 | yfjW | -2.2 | -1.8 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b3842 | rfaH | -2.2 | -6.3 | transcriptional activator RfaH (NCBI) | compare |
| b1304 | pspA | -2.2 | -4.3 | regulatory protein for phage-shock-protein operon (NCBI) | compare |
| b1563 | relE | -2.2 | -2.0 | Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI) | compare |
| b0014 | dnaK | -2.1 | -2.1 | molecular chaperone DnaK (NCBI) | compare |
| b1151 | ymfO | -2.1 | -2.4 | e14 prophage; conserved protein (RefSeq) | compare |
| b0564 | appY | -2.1 | -1.0 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b3181 | greA | -2.1 | -5.7 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b3794 | rffM | -2.1 | -5.5 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b1144 | ymfJ | -2.0 | -2.5 | orf, hypothetical protein (VIMSS) | compare |
| b1292 | sapC | -2.0 | -2.4 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1332 | ynaJ | -2.0 | -1.0 | predicted inner membrane protein (NCBI) | compare |
| b4438 | cyaR | -2.0 | -3.1 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b1090 | plsX | -1.9 | -3.6 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b0145 | dksA | -1.9 | -2.6 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b2895 | fldB | -1.9 | -3.3 | flavodoxin 2 (NCBI) | compare |
| b4394 | yjjX | -1.9 | -2.4 | orf, hypothetical protein (VIMSS) | compare |
| b0200 | gmhB | -1.9 | -1.2 | hypothetical protein (NCBI) | compare |
| b1792 | yeaO | -1.8 | -2.2 | orf, hypothetical protein (VIMSS) | compare |
| b3786 | rffE | -1.8 | -8.0 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b3911 | cpxA | -1.8 | -6.7 | two-component sensor protein (NCBI) | compare |
| b3784 | rfe | -1.8 | -11.0 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b1346 | ydaQ | -1.8 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b3839 | tatC | -1.8 | -3.2 | TatABCE protein translocation system subunit (NCBI) | compare |
| b3787 | rffD | -1.8 | -8.6 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b3790 | rffC | -1.8 | -4.6 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b3630 | rfaP | -1.8 | -7.2 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b1361 | ydaW | -1.7 | -0.6 | orf, hypothetical protein (VIMSS) | compare |
| b3631 | rfaG | -1.7 | -11.1 | glucosyltransferase I (NCBI) | compare |
| b2808 | gcvA | -1.7 | -3.8 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0049 | apaH | -1.6 | -1.9 | diadenosinetetraphosphatase (NCBI) | compare |
| b1192 | ldcA | -1.6 | -1.1 | L,D-carboxypeptidase A (NCBI) | compare |
| b1739 | osmE | -1.6 | -2.2 | DNA-binding transcriptional activator (NCBI) | compare |
| b3792 | wzxE | -1.6 | -5.3 | O-antigen translocase (NCBI) | compare |
| b4702 | mgtL | -1.6 | -1.8 | regulatory leader peptide for mgtA (NCBI) | compare |
| b4481 | rffT | -1.6 | -4.9 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b2318 | truA | -1.5 | -2.3 | tRNA pseudouridine synthase A (NCBI) | compare |
| b3341 | rpsG | -1.5 | -1.2 | 30S ribosomal protein S7 (NCBI) | compare |
| b0737 | tolQ | -1.5 | -1.5 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b2281 | nuoI | -1.5 | -3.0 | NADH dehydrogenase subunit I (NCBI) | compare |
| b4418 | sraB | -1.5 | -2.0 | unknown RNA (NCBI) | compare |
| b1493 | gadB | -1.5 | -0.8 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b2620 | smpB | -1.5 | -1.0 | SsrA-binding protein (NCBI) | compare |
| b1942 | fliJ | -1.5 | -1.1 | flagellar biosynthesis chaperone (NCBI) | compare |
| b2175 | spr | -1.5 | -3.1 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b2910 | zapA | -1.5 | -2.5 | protein that localizes to the cytokinetic ring (NCBI) | compare |
| b2846 | yqeH | -1.4 | -0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1618 | uidR | -1.4 | -2.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1103 | ycfF | -1.4 | -1.1 | orf, hypothetical protein (VIMSS) | compare |
| b4509 | ylcG | -1.4 | -3.4 | DLP12 prophage; predicted protein (NCBI) | compare |
| b2934 | cmtB | -1.3 | -0.9 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1984 | asnW | -1.3 | -0.9 | tRNA-Asn (NCBI) | compare |
| b1861 | ruvA | -1.3 | -0.9 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b1823 | cspC | -1.3 | -1.9 | stress protein, member of the CspA-family (NCBI) | compare |
| b2082 | ogrK | -1.3 | -3.0 | DNA-binding transcriptional regulator prophage P2 remnant (NCBI) | compare |
| b3026 | qseC | -1.3 | -1.9 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b4503 | yafF | -1.3 | -0.7 | no description | compare |
| b4642 | yoeD | -1.3 | -2.4 | no description | compare |
| b3706 | trmE | -1.3 | -1.7 | tRNA modification GTPase (NCBI) | compare |
| b1575 | dicB | -1.3 | -1.1 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b4520 | ymgF | -1.3 | -1.4 | hypothetical protein (NCBI) | compare |
| b0018 | mokC | -1.3 | -1.1 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b1307 | pspD | -1.2 | -1.5 | peripheral inner membrane phage-shock protein (NCBI) | compare |
| b2136 | yohD | -1.2 | -3.2 | orf, hypothetical protein (VIMSS) | compare |
| b4402 | yjjY | -1.2 | -1.0 | hypothetical protein (NCBI) | compare |
| b1290 | sapF | -1.2 | -0.8 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b4535 | yniD | -1.2 | -1.1 | predicted protein (RefSeq) | compare |
| b4701 | sokX | -1.2 | -0.8 | sok-related sRNA, function unknown (RefSeq) | compare |
| b0630 | lipB | -1.2 | -0.8 | protein of lipoate biosynthesis (VIMSS) | compare |
| b1175 | minD | -1.2 | -2.8 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b3162 | deaD | -1.2 | -3.7 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b2531 | iscR | -1.2 | -1.2 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1465 | narV | -1.2 | -1.5 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b4451 | ryhB | -1.2 | -1.2 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b1236 | galU | -1.2 | -2.7 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b0400 | phoR | -1.2 | -5.2 | sensory histidine kinase in two-component regulatory system with PhoB (NCBI) | compare |
| b4648 | ysaC | -1.2 | -1.8 | no description | compare |
| b4375 | prfC | -1.2 | -3.8 | peptide chain release factor 3 (NCBI) | compare |
| b3778 | rep | -1.1 | -5.1 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b4436 | ryeC | -1.1 | -1.5 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b1936 | intG | -1.1 | -0.7 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b1855 | lpxM | -1.1 | -2.4 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b0101 | yacG | -1.1 | -2.9 | zinc-binding protein (NCBI) | compare |
| b0627 | tatE | -1.1 | -2.0 | twin arginine translocase protein E (NCBI) | compare |
| b2446 | yffO | -1.1 | -2.0 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b2618 | b2618 | -1.1 | -3.0 | orf, hypothetical protein (VIMSS) | compare |
| b1963 | b1963 | -1.1 | -2.8 | orf, hypothetical protein (VIMSS) | compare |
| b1448 | yncA | -1.1 | -2.0 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b3414 | gntY | -1.1 | -3.5 | predicted gluconate transport associated protein (NCBI) | compare |
| b1084 | rne | -1.1 | -3.7 | fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) | compare |
| b1804 | rnd | -1.1 | -2.8 | ribonuclease D (NCBI) | compare |
| b2501 | ppk | -1.1 | -5.0 | polyphosphate kinase (NCBI) | compare |
| b2258 | b2258 | -1.0 | -0.9 | putative transport/receptor protein (VIMSS) | compare |
| b1811 | yoaH | -1.0 | -1.6 | hypothetical protein (NCBI) | compare |
| b0741 | pal | -1.0 | -2.1 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b1850 | eda | -1.0 | -1.1 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b3205 | yhbJ | -1.0 | -2.1 | hypothetical protein (NCBI) | compare |
| b0739 | tolA | -1.0 | -1.4 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b1293 | sapB | -1.0 | -0.8 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0624 | crcB | -1.0 | -2.2 | camphor resistance protein CrcB (NCBI) | compare |
| b1095 | fabF | -1.0 | -3.2 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b3387 | dam | -1.0 | -6.0 | DNA adenine methylase (NCBI) | compare |
| b0912 | ihfB | -1.0 | -2.4 | integration host factor subunit beta (NCBI) | compare |
| b3761 | trpT | -1.0 | -1.2 | tRNA-Trp (NCBI) | compare |
| b1658 | purR | -1.0 | -3.0 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b4431 | rprA | -1.0 | -1.3 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b3626 | rfaJ | -1.0 | -3.2 | UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase (NCBI) | compare |
| b2198 | ccmD | -1.0 | -1.3 | cytochrome c biogenesis protein (NCBI) | compare |
| b3493 | pitA | -1.0 | -4.3 | phosphate transporter, low-affinity (NCBI) | compare |
| b1730 | ydjO | -1.0 | -0.6 | predicted protein (RefSeq) | compare |
| b1728 | ydjM | -1.0 | -1.2 | predicted inner membrane protein regulated by LexA (RefSeq) | compare |
| b4202 | rpsR | -1.0 | -1.1 | 30S ribosomal protein S18 (NCBI) | compare |
| b2399 | yfeD | -1.0 | -3.1 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b0389 | yaiA | -1.0 | -1.5 | hypothetical protein (NCBI) | compare |
| b4179 | vacB | -0.9 | -3.8 | putative enzyme (VIMSS) | compare |
| b2142 | yohK | -0.9 | -3.3 | predicted inner membrane protein (NCBI) | compare |
| b1712 | ihfA | -0.9 | -0.6 | integration host factor subunit alpha (NCBI) | compare |
| b0167 | glnD | -0.9 | -3.3 | PII uridylyl-transferase (NCBI) | compare |
| b3742 | mioC | -0.9 | -2.5 | flavodoxin (NCBI) | compare |
| b4697 | yrdF | -0.9 | -2.9 | no description | compare |
| b1104 | ycfL | -0.9 | -1.0 | hypothetical protein (NCBI) | compare |
| b1269 | rluB | -0.9 | -2.9 | 23S rRNA pseudouridylate synthase (NCBI) | compare |
| b1839 | yebY | -0.9 | -2.4 | hypothetical protein (NCBI) | compare |
| b4242 | mgtA | -0.9 | -5.0 | magnesium transporter (NCBI) | compare |
| b2187 | yejL | -0.9 | -2.0 | hypothetical protein (NCBI) | compare |
| b0948 | ycbY | -0.9 | -4.1 | predicted methyltransferase (NCBI) | compare |
| b4172 | hfq | -0.9 | -0.6 | RNA-binding protein Hfq (NCBI) | compare |
| b1388 | paaA | -0.9 | -2.6 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b4048 | yjbM | -0.9 | -1.0 | hypothetical protein (NCBI) | compare |
| b2104 | thiM | -0.9 | -2.0 | hydroxyethylthiazole kinase (NCBI) | compare |
| b3204 | ptsN | -0.9 | -2.4 | sugar-specific enzyme IIA component of PTS (NCBI) | compare |
| b1259 | yciG | -0.9 | -1.5 | orf, hypothetical protein (VIMSS) | compare |
| b0677 | nagA | -0.9 | -3.2 | N-acetylglucosamine-6-phosphate deacetylase (NCBI) | compare |
| b1753 | ynjA | -0.8 | -1.3 | hypothetical protein (NCBI) | compare |
| b2706 | gutM | -0.8 | -1.6 | DNA-binding transcriptional activator of glucitol operon (NCBI) | compare |
| b0560 | nohB | -0.8 | -1.3 | DLP12 prophage; DNA packaging protein (NCBI) | compare |
| b0688 | pgm | -0.8 | -2.2 | phosphoglucomutase (NCBI) | compare |
| b1063 | yceB | -0.8 | -1.5 | predicted lipoprotein (NCBI) | compare |
| b3500 | gor | -0.8 | -1.0 | glutathione reductase (NCBI) | compare |
| b4104 | phnE | -0.8 | -1.5 | phosphonate/organophosphate ester transporter subunit (NCBI) | compare |
| b3836 | b3836 | -0.8 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1186 | nhaB | -0.8 | -3.9 | NhaB sodium/proton transporter (Katherine Huang) | compare |
| b4522 | yciX_1 | -0.8 | -2.1 | hypothetical protein (NCBI) | compare |
| b0142 | folK | -0.8 | -0.4 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b1670 | ydhU | -0.8 | -2.5 | predicted cytochrome (NCBI) | compare |
| b1147 | ymfL | -0.8 | -1.6 | e14 prophage; predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b2168 | fruK | -0.8 | -0.7 | 1-phosphofructokinase (NCBI) | compare |
| b1012 | b1012 | -0.8 | -2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1661 | cfa | -0.8 | -2.9 | cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) (NCBI) | compare |
| b3426 | glpD | -0.8 | -2.4 | sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding (NCBI) | compare |
| b4552 | yrhC | -0.8 | -0.8 | no description | compare |
| b1765 | ydjA | -0.8 | -0.5 | predicted oxidoreductase (NCBI) | compare |
| b0683 | fur | -0.8 | -0.4 | ferric uptake regulator (NCBI) | compare |
| b3961 | oxyR | -0.8 | -4.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2174 | b2174 | -0.8 | -4.2 | orf, hypothetical protein (VIMSS) | compare |
| b3870 | glnA | -0.7 | -1.9 | glutamine synthetase (NCBI) | compare |
| b2990 | hybG | -0.7 | -1.2 | hydrogenase 2 accessory protein (NCBI) | compare |
| b1837 | yebW | -0.7 | -0.9 | orf, hypothetical protein (VIMSS) | compare |
| b2369 | evgA | -0.7 | -1.9 | DNA-binding response regulator in two-component regulatory system with EvgS (NCBI) | compare |
| b1724 | ydiZ | -0.7 | -0.9 | hypothetical protein (NCBI) | compare |
| b3644 | yicC | -0.7 | -2.9 | hypothetical protein (NCBI) | compare |
| b3009 | yghB | -0.7 | -3.7 | conserved inner membrane protein (NCBI) | compare |
| b0866 | ybjQ | -0.7 | -0.7 | hypothetical protein (NCBI) | compare |
| b0357 | yaiN | -0.7 | -0.8 | putative alpha helix chain (VIMSS) | compare |
| b2678 | proW | -0.7 | -3.5 | glycine betaine transporter subunit (NCBI) | compare |
| b0406 | tgt | -0.7 | -2.8 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b1378 | ydbK | -0.7 | -2.8 | fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein (NCBI) | compare |
| b1502 | ydeQ | -0.7 | -1.2 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b1177 | ycgJ | -0.7 | -2.4 | hypothetical protein (NCBI) | compare |
| b0685 | ybfE | -0.7 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1881 | cheZ | -0.7 | -2.7 | chemotaxis regulator, protein phosphatase for CheY (NCBI) | compare |
| b1884 | cheR | -0.7 | -1.7 | chemotaxis regulator, protein-glutamate methyltransferase (NCBI) | compare |
| b2208 | napF | -0.7 | -2.6 | ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) (NCBI) | compare |
| b1589 | ynfG | -0.7 | -1.5 | oxidoreductase, Fe-S subunit (NCBI) | compare |
| b2314 | dedD | -0.7 | -1.8 | putative lipoprotein (VIMSS) | compare |
| b3857 | mobA | -0.7 | -2.2 | molybdopterin-guanine dinucleotide biosynthesis protein A (NCBI) | compare |
| b1859 | znuB | -0.7 | -2.3 | high-affinity zinc transporter membrane component (NCBI) | compare |
| b4411 | ecnB | -0.7 | -2.4 | entericidin B membrane lipoprotein (NCBI) | compare |
| b2080 | b2080 | -0.7 | -1.0 | orf, hypothetical protein (VIMSS) | compare |
| b3979 | thrT | -0.7 | -0.2 | tRNA-Thr (NCBI) | compare |
| b1515 | lsrD | -0.7 | -1.9 | AI2 transporter (NCBI) | compare |
| b1158 | pin | -0.7 | -2.7 | e14 prophage; site-specific DNA recombinase (NCBI) | compare |
| b2398 | yfeC | -0.7 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4325 | yjiC | -0.6 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2481 | hyfA | -0.6 | -2.4 | hydrogenase 4 Fe-S subunit (VIMSS) | compare |
| b0423 | thiI | -0.6 | -2.2 | thiamine biosynthesis protein ThiI (NCBI) | compare |
| b2867 | xdhB | -0.6 | -2.3 | xanthine dehydrogenase, FAD-binding subunit (NCBI) | compare |
| b0028 | fkpB | -0.6 | -2.7 | FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (NCBI) | compare |