Experiment set6S93 for Pseudomonas sp. RS175

Compare to:

methyl ferulate carbon source

200 most important genes:

  gene name fitness t score description  
PFR28_00622 -6.5 -3.2 Beta-ketoadipyl-CoA thiolase compare
PFR28_04930 -4.2 -10.5 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_03860 -4.2 -5.8 putative murein peptide carboxypeptidase compare
PFR28_00624 -3.8 -5.4 Protocatechuate 3,4-dioxygenase alpha chain compare
PFR28_00730 -3.7 -4.6 5-oxoprolinase subunit C compare
PFR28_04986 -3.6 -6.9 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_01366 -3.4 -11.1 Sulfite reductase [ferredoxin] compare
PFR28_05016 -3.4 -12.7 Glutamate synthase [NADPH] small chain compare
PFR28_04628 -3.4 -2.3 Thiol:disulfide interchange protein DsbA compare
PFR28_00620 -3.3 -10.4 3-oxoadipate CoA-transferase subunit A compare
PFR28_04633 -3.3 -2.3 Alginate biosynthesis sensor protein KinB compare
PFR28_02484 -3.3 -2.3 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_03178 -3.3 -3.5 tRNA-Asp compare
PFR28_00089 -3.2 -1.2 Transcription termination/antitermination protein NusA compare
PFR28_02811 -3.1 -5.6 Amidophosphoribosyltransferase compare
PFR28_04992 -3.1 -1.3 hypothetical protein compare
PFR28_02603 -3.1 -8.6 Siroheme synthase compare
PFR28_04071 -3.1 -1.3 Multifunctional CCA protein compare
PFR28_00627 -3.0 -8.0 3-oxoadipate enol-lactonase 2 compare
PFR28_04030 -3.0 -10.9 hypothetical protein compare
PFR28_01839 -3.0 -11.2 Long-chain-fatty-acid--CoA ligase FadD15 compare
PFR28_03388 -3.0 -12.5 Quinolinate synthase A compare
PFR28_04834 -3.0 -12.8 L-threonine dehydratase biosynthetic IlvA compare
PFR28_01365 -3.0 -5.8 hypothetical protein compare
PFR28_04245 -3.0 -12.3 Homoserine O-succinyltransferase compare
PFR28_03209 -2.9 -3.3 Corrinoid adenosyltransferase compare
PFR28_00837 -2.9 -5.7 hypothetical protein compare
PFR28_04831 -2.9 -2.8 RNA pyrophosphohydrolase compare
PFR28_00618 -2.9 -11.8 Pca regulon regulatory protein compare
PFR28_01113 -2.8 -3.3 DNA topoisomerase 1 compare
PFR28_01837 -2.8 -11.4 Hydroxycinnamoyl-CoA hydratase-lyase compare
PFR28_00623 -2.8 -5.2 Protocatechuate 3,4-dioxygenase beta chain compare
PFR28_02823 -2.8 -2.1 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_00159 -2.8 -8.9 hypothetical protein compare
PFR28_04985 -2.8 -4.4 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_00074 -2.8 -4.3 Chaperone protein DnaJ compare
PFR28_01842 -2.8 -3.7 Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1 compare
PFR28_00187 -2.8 -12.2 Histidinol dehydrogenase compare
PFR28_04929 -2.7 -4.6 Histidine biosynthesis bifunctional protein HisB compare
PFR28_03412 -2.7 -5.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_00186 -2.7 -5.4 ATP phosphoribosyltransferase compare
PFR28_00851 -2.7 -1.8 Flagellum site-determining protein YlxH compare
PFR28_00626 -2.6 -2.4 3-carboxy-cis,cis-muconate cycloisomerase compare
PFR28_04932 -2.6 -4.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_02821 -2.6 -12.8 3-isopropylmalate dehydrogenase compare
PFR28_05015 -2.6 -16.2 Glutamate synthase [NADPH] large chain compare
PFR28_04998 -2.6 -3.6 ATP-dependent protease ATPase subunit HslU compare
PFR28_03463 -2.6 -1.7 hypothetical protein compare
PFR28_01265 -2.6 -8.5 (R)-benzylsuccinyl-CoA dehydrogenase compare
PFR28_00621 -2.6 -8.2 3-oxoadipate CoA-transferase subunit B compare
PFR28_03130 -2.5 -3.2 Streptothricin hydrolase compare
PFR28_05139 -2.5 -1.7 hypothetical protein compare
PFR28_03856 -2.5 -2.8 LPS-assembly lipoprotein LptE compare
PFR28_03697 -2.5 -9.4 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_00305 -2.5 -7.8 2-isopropylmalate synthase compare
PFR28_03635 -2.5 -4.6 Malate:quinone oxidoreductase compare
PFR28_02810 -2.4 -10.0 O-succinylhomoserine sulfhydrylase compare
PFR28_00188 -2.4 -8.8 Histidinol-phosphate aminotransferase compare
PFR28_00241 -2.4 -3.6 Disulfide bond formation protein B compare
PFR28_04933 -2.4 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_02745 -2.4 -4.6 Peptidyl-prolyl cis-trans isomerase cyp18 compare
PFR28_00839 -2.4 -5.0 hypothetical protein compare
PFR28_04278 -2.3 -8.0 Dihydroxy-acid dehydratase compare
PFR28_01594 -2.3 -3.0 hypothetical protein compare
PFR28_04565 -2.3 -11.3 Protein RarD compare
PFR28_00613 -2.3 -1.2 hypothetical protein compare
PFR28_04202 -2.3 -4.3 5,10-methylenetetrahydrofolate reductase compare
PFR28_04246 -2.3 -8.4 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_00690 -2.3 -6.0 RNA polymerase sigma-H factor compare
PFR28_03784 -2.3 -7.3 Energy-dependent translational throttle protein EttA compare
PFR28_02292 -2.3 -9.1 6-aminohexanoate-dimer hydrolase compare
PFR28_03865 -2.3 -8.4 Endolytic peptidoglycan transglycosylase RlpA compare
PFR28_01319 -2.3 -9.4 1,4-alpha-glucan branching enzyme GlgB compare
PFR28_01109 -2.3 -4.0 hypothetical protein compare
PFR28_00325 -2.2 -2.4 Inner membrane protein YpjD compare
PFR28_05071 -2.2 -3.5 D-inositol-3-phosphate glycosyltransferase compare
PFR28_03414 -2.2 -2.1 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_05105 -2.2 -8.4 Phosphoserine phosphatase SerB2 compare
PFR28_04232 -2.2 -5.6 Glutathione synthetase compare
PFR28_00193 -2.2 -8.2 Sulfate adenylyltransferase subunit 2 compare
PFR28_03363 -2.2 -10.3 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_01575 -2.2 -4.2 Ycf48-like protein compare
PFR28_05124 -2.2 -2.9 Modulator of FtsH protease HflC compare
PFR28_01930 -2.2 -2.0 HTH-type transcriptional regulator McbR compare
PFR28_01841 -2.1 -5.5 Oxidoreductase NdmD compare
PFR28_00098 -2.1 -6.1 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_03549 -2.1 -1.7 Molybdopterin synthase catalytic subunit compare
PFR28_04380 -2.1 -2.4 Transcriptional regulator SutA compare
PFR28_01378 -2.1 -4.0 Magnesium-chelatase 38 kDa subunit compare
PFR28_00403 -2.1 -4.5 Regulator of sigma-E protease RseP compare
PFR28_03837 -2.1 -6.2 Leucine-responsive regulatory protein compare
PFR28_03298 -2.1 -7.4 Nucleoid occlusion factor SlmA compare
PFR28_00194 -2.1 -8.2 Bifunctional enzyme CysN/CysC compare
PFR28_05120 -2.1 -8.7 tRNA dimethylallyltransferase compare
PFR28_00633 -2.1 -8.3 HTH-type transcriptional regulator TtgR compare
PFR28_03698 -2.0 -7.8 Acetolactate synthase isozyme 3 small subunit compare
PFR28_00694 -2.0 -6.7 Beta-barrel assembly-enhancing protease compare
PFR28_00460 -2.0 -2.6 hypothetical protein compare
PFR28_04936 -2.0 -3.3 Carboxy-terminal processing protease CtpB compare
PFR28_00928 -2.0 -1.8 putative sugar transferase EpsL compare
PFR28_00688 -2.0 -1.5 hypothetical protein compare
PFR28_03611 -2.0 -10.6 HTH-type transcriptional regulator CdhR compare
PFR28_04832 -2.0 -7.6 putative phosphatase compare
PFR28_02824 -2.0 -3.8 3-isopropylmalate dehydratase large subunit compare
PFR28_03530 -1.9 -1.5 hypothetical protein compare
PFR28_02838 -1.9 -8.2 Aromatic-amino-acid aminotransferase compare
PFR28_04564 -1.9 -10.1 Aspartate-semialdehyde dehydrogenase compare
PFR28_03657 -1.9 -4.1 Beta-barrel assembly-enhancing protease compare
PFR28_01110 -1.9 -2.5 Fatty acid oxidation complex subunit alpha compare
PFR28_01838 -1.9 -3.9 Vanillin dehydrogenase compare
PFR28_03282 -1.9 -6.1 Arginine N-succinyltransferase subunit alpha compare
PFR28_05205 -1.9 -3.4 Precorrin-8X methylmutase compare
PFR28_03883 -1.9 -7.1 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase compare
PFR28_03427 -1.9 -6.4 Sensor histidine kinase RcsC compare
PFR28_05000 -1.8 -1.5 Cell division protein FtsN compare
PFR28_01094 -1.8 -5.7 hypothetical protein compare
PFR28_03699 -1.8 -2.9 Acetolactate synthase isozyme 3 large subunit compare
PFR28_01317 -1.8 -9.7 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 2 compare
PFR28_04489 -1.7 -7.5 Phosphate-binding protein PstS compare
PFR28_03653 -1.7 -1.5 Molybdopterin-synthase adenylyltransferase compare
PFR28_00968 -1.7 -1.4 hypothetical protein compare
PFR28_05125 -1.7 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_03278 -1.7 -2.7 hypothetical protein compare
PFR28_03714 -1.7 -8.4 RNA polymerase-binding transcription factor DksA compare
PFR28_05176 -1.7 -2.5 Chaperone modulatory protein CbpM compare
PFR28_03696 -1.7 -6.6 hypothetical protein compare
PFR28_01127 -1.7 -6.9 Soluble pyridine nucleotide transhydrogenase compare
PFR28_03864 -1.7 -7.9 D-alanyl-D-alanine carboxypeptidase DacC compare
PFR28_00191 -1.7 -7.4 Serine endoprotease DegS compare
PFR28_04208 -1.7 -4.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PFR28_05123 -1.7 -3.8 Modulator of FtsH protease HflK compare
PFR28_04953 -1.6 -9.9 Maltodextrin phosphorylase compare
PFR28_04102 -1.6 -6.8 8-amino-7-oxononanoate synthase compare
PFR28_03169 -1.6 -7.8 Tail-specific protease compare
PFR28_02608 -1.6 -1.6 DNA translocase FtsK compare
PFR28_04868 -1.6 -2.0 Transcriptional regulatory protein OmpR compare
PFR28_02924 -1.6 -2.4 2-methyl-aconitate isomerase compare
PFR28_02094 -1.6 -1.7 Glycerol-3-phosphate regulon repressor compare
PFR28_04939 -1.6 -3.1 putative protein YibN compare
PFR28_05062 -1.6 -7.6 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme compare
PFR28_02925 -1.6 -7.0 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) compare
PFR28_01227 -1.6 -2.9 Trigger factor compare
PFR28_01114 -1.6 -5.2 hypothetical protein compare
PFR28_02361 -1.6 -8.3 hypothetical protein compare
PFR28_01060 -1.6 -4.2 HTH-type transcriptional repressor NanR compare
PFR28_03455 -1.6 -4.4 Pyruvate kinase II compare
PFR28_01108 -1.6 -5.8 Universal stress protein A compare
PFR28_00947 -1.6 -5.1 Acyl-CoA thioesterase 2 compare
PFR28_03223 -1.6 -8.5 GTP pyrophosphokinase compare
PFR28_03844 -1.6 -3.6 Thiamine-phosphate synthase compare
PFR28_02449 -1.6 -7.7 putative branched-chain-amino-acid aminotransferase compare
PFR28_03846 -1.6 -4.3 hypothetical protein compare
PFR28_02397 -1.5 -2.7 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
PFR28_02846 -1.5 -3.7 Adaptive-response sensory-kinase SasA compare
PFR28_00572 -1.5 -5.4 HTH-type transcriptional regulator HexR compare
PFR28_04842 -1.5 -3.9 D-3-phosphoglycerate dehydrogenase compare
PFR28_01721 -1.5 -5.1 Protein-glutamate methylesterase/protein-glutamine glutaminase 2 compare
PFR28_02201 -1.5 -1.9 Chaperone SurA compare
PFR28_00966 -1.5 -8.0 HTH-type transcriptional regulator CysB compare
PFR28_00427 -1.5 -8.6 RNA polymerase sigma factor RpoS compare
PFR28_05244 -1.5 -7.4 Copper-exporting P-type ATPase compare
PFR28_02678 -1.5 -1.8 hypothetical protein compare
PFR28_04068 -1.4 -8.9 hypothetical protein compare
PFR28_04486 -1.4 -7.2 Phosphate import ATP-binding protein PstB compare
PFR28_04100 -1.4 -6.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_01095 -1.4 -5.1 Cbb3-type cytochrome c oxidase subunit CcoN1 compare
PFR28_02616 -1.4 -8.7 Isocitrate dehydrogenase [NADP] compare
PFR28_04103 -1.4 -5.6 Biotin synthase compare
PFR28_00106 -1.4 -2.6 Tagatose-6-phosphate kinase compare
PFR28_00631 -1.4 -9.5 putative efflux pump membrane transporter TtgB compare
PFR28_00419 -1.4 -6.9 HTH-type transcriptional regulator DmlR compare
PFR28_00628 -1.4 -4.9 hypothetical protein compare
PFR28_02290 -1.4 -5.9 Spermidine-binding periplasmic protein SpuE compare
PFR28_01084 -1.4 -2.1 hypothetical protein compare
PFR28_00561 -1.4 -2.1 Phosphogluconate dehydratase compare
PFR28_01450 -1.4 -1.1 hypothetical protein compare
PFR28_05091 -1.4 -8.0 Phosphomethylpyrimidine synthase compare
PFR28_01410 -1.4 -4.5 Response regulator GacA compare
PFR28_02889 -1.4 -3.0 hypothetical protein compare
PFR28_02147 -1.3 -5.6 4-alpha-glucanotransferase compare
PFR28_00277 -1.3 -0.9 Queuine tRNA-ribosyltransferase compare
PFR28_01081 -1.3 -0.9 hypothetical protein compare
PFR28_00729 -1.3 -5.0 5-oxoprolinase subunit B compare
PFR28_01690 -1.3 -2.0 hypothetical protein compare
PFR28_02927 -1.3 -6.9 2-methylcitrate synthase compare
PFR28_00873 -1.3 -4.7 hypothetical protein compare
PFR28_01315 -1.3 -1.8 hypothetical protein compare
PFR28_03200 -1.3 -2.7 Adenosylcobinamide-GDP ribazoletransferase compare
PFR28_00693 -1.3 -3.4 Periplasmic serine endoprotease DegP compare
PFR28_00104 -1.3 -4.9 Catabolite repressor/activator compare
PFR28_00180 -1.3 -3.8 Intermembrane phospholipid transport system permease protein MlaE compare
PFR28_00420 -1.3 -4.0 S-(hydroxymethyl)glutathione dehydrogenase compare
PFR28_02205 -1.3 -2.6 hypothetical protein compare
PFR28_00632 -1.3 -4.2 putative efflux pump periplasmic linker TtgA compare
PFR28_02150 -1.3 -7.9 Glycogen operon protein GlgX compare
PFR28_04585 -1.3 -4.5 Chromosome partitioning protein ParA compare
PFR28_03086 -1.3 -7.0 Chaperone protein HtpG compare
PFR28_01231 -1.3 -2.5 Peptidyl-prolyl cis-trans isomerase D compare
PFR28_04251 -1.3 -3.8 tRNA (guanine-N(7)-)-methyltransferase compare
PFR28_04755 -1.3 -6.5 Glutarate-semialdehyde dehydrogenase compare


Specific Phenotypes

For 21 genes in this experiment

For carbon source methyl ferulate in Pseudomonas sp. RS175

For carbon source methyl ferulate across organisms