Experiment set6S90 for Pseudomonas sp. RS175

Compare to:

methyl-trans-p-coumarate carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
PFR28_00546 -2.5 -11.5 HTH-type transcriptional activator RhaS compare
PFR28_01801 -2.5 -6.3 hypothetical protein compare
PFR28_01983 -2.2 -5.6 Coniferyl aldehyde dehydrogenase compare
PFR28_01802 -2.2 -6.4 Sensor histidine kinase RcsC compare
PFR28_01984 -2.0 -8.6 Acetyl esterase compare
PFR28_00632 -2.0 -7.5 putative efflux pump periplasmic linker TtgA compare
PFR28_03603 -2.0 -12.9 Stringent starvation protein A compare
PFR28_02147 -2.0 -7.4 4-alpha-glucanotransferase compare
PFR28_02361 -1.9 -9.3 hypothetical protein compare
PFR28_00545 -1.9 -8.1 p-hydroxybenzoate hydroxylase compare
PFR28_00562 -1.8 -9.9 Glucokinase compare
PFR28_00631 -1.8 -13.2 putative efflux pump membrane transporter TtgB compare
PFR28_01722 -1.8 -6.2 Sensor histidine kinase RcsC compare
PFR28_04291 -1.8 -7.6 Inner membrane ABC transporter permease protein YdcV compare
PFR28_03864 -1.6 -7.2 D-alanyl-D-alanine carboxypeptidase DacC compare
PFR28_04316 -1.5 -7.3 Aminomethyltransferase compare
PFR28_04634 -1.5 -6.3 Alginate biosynthesis transcriptional regulatory protein AlgB compare
PFR28_00630 -1.5 -6.8 putative efflux pump outer membrane protein TtgC compare
PFR28_02150 -1.4 -8.5 Glycogen operon protein GlgX compare
PFR28_04631 -1.4 -6.1 N-acetylmuramoyl-L-alanine amidase AmiD compare
PFR28_03840 -1.4 -8.4 AMP nucleosidase compare
PFR28_03779 -1.4 -8.9 hypothetical protein compare
PFR28_02410 -1.2 -5.6 hypothetical protein compare
PFR28_01590 -1.2 -5.1 hypothetical protein compare
PFR28_04204 -1.2 -5.7 ATP-dependent RNA helicase RhlE compare
PFR28_03078 -1.2 -5.6 hypothetical protein compare
PFR28_04448 -1.1 -6.0 Protein phosphatase PrpC compare
PFR28_00735 -1.1 -5.8 hypothetical protein compare
PFR28_04546 +1.0 9.0 hypothetical protein compare
PFR28_03286 +1.1 7.5 Octopine transport system permease protein OccM compare
PFR28_04112 +1.1 6.5 hypothetical protein compare
PFR28_04920 +1.1 6.9 Putative nuclease YhcG compare
PFR28_00129 +1.2 8.4 Porin D compare
PFR28_02818 +1.2 9.3 hypothetical protein compare
PFR28_00131 +1.3 8.1 Periplasmic dipeptide transport protein compare
PFR28_01720 +1.3 6.6 Chemotaxis protein methyltransferase compare
PFR28_01133 +1.3 6.7 Sensor histidine kinase CusS compare
PFR28_03973 +1.4 6.3 Inner membrane transport protein YajR compare
PFR28_04209 +1.4 8.0 Ribosomal RNA small subunit methyltransferase E compare
PFR28_03354 +1.4 9.0 Peptidoglycan-associated lipoprotein compare
PFR28_03006 +1.6 9.5 Endolytic murein transglycosylase compare
PFR28_00841 +1.6 6.3 hypothetical protein compare
PFR28_01271 +1.7 5.7 Glutamine synthetase compare
PFR28_03961 +1.7 6.4 dTDP-4-dehydrorhamnose reductase compare
PFR28_01269 +1.7 6.3 Putrescine importer PuuP compare
PFR28_04788 +1.8 13.7 Type I secretion system membrane fusion protein PrsE compare
PFR28_04785 +1.8 15.6 hypothetical protein compare
PFR28_04787 +1.8 12.9 Leukotoxin export ATP-binding protein LtxB compare
PFR28_01272 +2.0 7.1 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB compare
PFR28_03073 +2.2 11.0 Putative esterase compare
PFR28_01268 +2.5 13.4 Arginine N-succinyltransferase subunit alpha compare
PFR28_00138 +2.6 21.9 Vitamin B12 transport ATP-binding protein BacA compare
PFR28_00692 +2.6 16.4 Sigma factor AlgU regulatory protein MucB compare
PFR28_01267 +2.6 9.5 Arginine N-succinyltransferase subunit beta compare
PFR28_03298 +4.1 28.8 Nucleoid occlusion factor SlmA compare


Specific phenotypes for carbon source methyl-trans-p-coumarate across organisms